MELO3C017934.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C017934.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionATP synthase subunit alpha, chloroplastic
Locationchr07: 26783659 .. 26783835 (+)
RNA-Seq ExpressionMELO3C017934.jh1
SyntenyMELO3C017934.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

mRNA sequence

ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

Coding sequence (CDS)

ATGGAATCTCTGATTTTGAGATCATTGTTAGACTCTCGTTTAATTGAATCCCCCGCTCCTGGTATTATTTTGAGACGTTTCGTATACGAGCATCTTCAAACAGGACTTATTGCTATTGATTCAATGATTCCTATCGGACGTGGTCATCGAGAATTAATTATACCCTGTTTTGACTGA

Protein sequence

MESLILRSLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELIIPCFD
Homology
[Close]
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match: GFQ08748.1 (ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum])

HSP 1 Score: 78.2 bits (191), Expect = 2.72e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 15 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 58

[Close]
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match: KAF4381564.1 (hypothetical protein F8388_021192 [Cannabis sativa] >KAF4399908.1 hypothetical protein G4B88_021122 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 3.66e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
           +SRLIESPAPGII RRFVYE LQTGLIAIDSMIPIGRGHRELII
Sbjct: 121 ESRLIESPAPGIISRRFVYEPLQTGLIAIDSMIPIGRGHRELII 164

[Close]
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match: GFP81799.1 (ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum])

HSP 1 Score: 78.2 bits (191), Expect = 5.14e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 39 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 82

[Close]
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match: MBN8156921.1 (F0F1 ATP synthase subunit alpha [Vibrio vulnificus])

HSP 1 Score: 78.2 bits (191), Expect = 5.14e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 42 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 85

[Close]
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match: AAN86913.1 (ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN87786.1 ATPase alpha subunit, partial [Arabidopsis suecica] >AAN86914.1 ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN86915.1 ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN86916.1 ATPase alpha subunit, partial [Arabidopsis thaliana])

HSP 1 Score: 78.2 bits (191), Expect = 8.02e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 10 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 53

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match: Q2QDA3 (ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.1e-15
Identity = 41/44 (93.18%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           DSRLIESPAPGIILRR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 DSRLIESPAPGIILRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match: A6MMA7 (ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus OX=13006 GN=atpA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SAYESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match: A4QJA0 (ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match: A4QJI4 (ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match: Q70XV0 (ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=atpA PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 126 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match: A0A7J6HYW8 (Photosystem II protein D1 OS=Cannabis sativa OX=3483 GN=F8388_021192 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.77e-17
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
           +SRLIESPAPGII RRFVYE LQTGLIAIDSMIPIGRGHRELII
Sbjct: 121 ESRLIESPAPGIISRRFVYEPLQTGLIAIDSMIPIGRGHRELII 164

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match: Q8HAW6 (ATPase alpha subunit (Fragment) OS=Arabidopsis suecica OX=45249 GN=atpA PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.88e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 10 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 53

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match: Q8HAW5 (ATPase alpha subunit (Fragment) OS=Arabidopsis thaliana OX=3702 GN=atpA PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.88e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 10 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 53

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match: A0A7T7DK68 (ATP synthase CF1 alpha subunit (Fragment) OS=Chelidonium majus OX=71251 GN=atpA PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.14e-17
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0 

Query: 11 DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          +SRLIESPAPGII RR VYE LQTGLIAIDSMIP+GRG RELII
Sbjct: 35 ESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPVGRGQRELII 78

[Close]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match: A0A6A4QBG3 (Putative H(+)-transporting two-sector ATPase OS=Lupinus albus OX=3870 GN=Lalb_Chr07g0192211 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.82e-17
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 8  SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 54
          S L+SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 42 SALESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 88

[Close]
BLAST of MELO3C017934.jh1 vs. TAIR 10
Match: ATCG00120.1 (ATP synthase subunit alpha )

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-15
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 8   SLLDSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           S  +SRLIESPAPGII RR VYE LQTGLIAIDSMIPIGRG RELII
Sbjct: 123 SASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELII 169

[Close]
BLAST of MELO3C017934.jh1 vs. TAIR 10
Match: AT2G07698.1 (ATPase, F1 complex, alpha subunit protein )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           + R +E  APGI+ R+ V+E +QTGL A+DS++PIGRG REL+I
Sbjct: 397 EQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLI 440

[Close]
BLAST of MELO3C017934.jh1 vs. TAIR 10
Match: ATMG01190.1 (ATP synthase subunit 1 )

HSP 1 Score: 57.8 bits (138), Expect = 3.4e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 11  DSRLIESPAPGIILRRFVYEHLQTGLIAIDSMIPIGRGHRELII 55
           + R +E  APGI+ R+ V+E +QTGL A+DS++PIGRG REL+I
Sbjct: 127 EQRRVEVKAPGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLI 170

The following BLAST results are available for this feature:
BLAST of MELO3C017934.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
GFQ08748.12.72e-1788.64ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum][more]
KAF4381564.13.66e-1793.18hypothetical protein F8388_021192 [Cannabis sativa] >KAF4399908.1 hypothetical p... [more]
GFP81799.15.14e-1788.64ATP synthase subunit alpha chloroplastic [Phtheirospermum japonicum][more]
MBN8156921.15.14e-1788.64F0F1 ATP synthase subunit alpha [Vibrio vulnificus][more]
AAN86913.18.02e-1788.64ATPase alpha subunit, partial [Arabidopsis thaliana] >AAN87786.1 ATPase alpha su... [more]
BLAST of MELO3C017934.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q2QDA33.1e-1593.18ATP synthase subunit alpha, chloroplastic OS=Cucumis sativus OX=3659 GN=atpA PE=... [more]
A6MMA73.4e-1485.11ATP synthase subunit alpha, chloroplastic OS=Chloranthus spicatus OX=13006 GN=at... [more]
A4QJA04.5e-1485.11ATP synthase subunit alpha, chloroplastic OS=Aethionema cordifolium OX=434059 GN... [more]
A4QJI44.5e-1485.11ATP synthase subunit alpha, chloroplastic OS=Aethionema grandiflorum OX=72657 GN... [more]
Q70XV04.5e-1488.64ATP synthase subunit alpha, chloroplastic OS=Amborella trichopoda OX=13333 GN=at... [more]
BLAST of MELO3C017934.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J6HYW81.77e-1793.18Photosystem II protein D1 OS=Cannabis sativa OX=3483 GN=F8388_021192 PE=3 SV=1[more]
Q8HAW63.88e-1788.64ATPase alpha subunit (Fragment) OS=Arabidopsis suecica OX=45249 GN=atpA PE=4 SV=... [more]
Q8HAW53.88e-1788.64ATPase alpha subunit (Fragment) OS=Arabidopsis thaliana OX=3702 GN=atpA PE=4 SV=... [more]
A0A7T7DK684.14e-1786.36ATP synthase CF1 alpha subunit (Fragment) OS=Chelidonium majus OX=71251 GN=atpA ... [more]
A0A6A4QBG34.82e-1787.23Putative H(+)-transporting two-sector ATPase OS=Lupinus albus OX=3870 GN=Lalb_Ch... [more]
BLAST of MELO3C017934.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00120.13.2e-1585.11ATP synthase subunit alpha [more]
AT2G07698.13.4e-0956.82ATPase, F1 complex, alpha subunit protein [more]
ATMG01190.13.4e-0956.82ATP synthase subunit 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.12240coord: 8..56
e-value: 8.1E-11
score: 43.1
NoneNo IPR availablePANTHERPTHR48082:SF6ATP SYNTHASE SUBUNIT ALPHA, CHLOROPLASTICcoord: 11..54
NoneNo IPR availablePANTHERPTHR48082ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIALcoord: 11..54
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017934.jh1.t1MELO3C017934.jh1.t1mRNA