Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAAAAGATCACACCCTTCATCGTCTCTCTGAAAAACCCTTTTCATTACTTCAAGCAAATCAATTTTTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAATCCCTTTCAATTGGGAAACCCAACCCGGCCTCCCCAAAAACCAACCTTCCGAAACCCCCCCGCCAGCCGAACTCCCGCCGCCGTCATCCTCCGCCTTCGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTTAAGATTTGGTTTTGGAATAAACAGAGGAGAAAATCGAGGCGTGCGGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCCTCACCGAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGAAGAAAATCAAACGACGAGTCGCCGTCGTCGTCGTCTTTGTCGTGTATTTCTTATTCGTTGTCTTCGAATTCTTCTTCGGCTTCGTCGTCAGATCGTTACAACAACCGACGGCGCTCTAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA
mRNA sequence
ATGGCAGCAAAAGATCACACCCTTCATCGTCTCTCTGAAAAACCCTTTTCATTACTTCAAGCAAATCAATTTTTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAATCCCTTTCAATTGGGAAACCCAACCCGGCCTCCCCAAAAACCAACCTTCCGAAACCCCCCCGCCAGCCGAACTCCCGCCGCCGTCATCCTCCGCCTTCGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTTAAGATTTGGTTTTGGAATAAACAGAGGAGAAAATCGAGGCGTGCGGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCCTCACCGAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGAAGAAAATCAAACGACGAGTCGCCGTCGTCGTCGTCTTTGTCGTGTATTTCTTATTCGTTGTCTTCGAATTCTTCTTCGGCTTCGTCGTCAGATCGTTACAACAACCGACGGCGCTCTAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA
Coding sequence (CDS)
ATGGCAGCAAAAGATCACACCCTTCATCGTCTCTCTGAAAAACCCTTTTCATTACTTCAAGCAAATCAATTTTTTGTCCACAAAATCCTTTCTAGAAACTCCTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAATCCCTTTCAATTGGGAAACCCAACCCGGCCTCCCCAAAAACCAACCTTCCGAAACCCCCCCGCCAGCCGAACTCCCGCCGCCGTCATCCTCCGCCTTCGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTTAAGATTTGGTTTTGGAATAAACAGAGGAGAAAATCGAGGCGTGCGGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCCTCACCGAGACGACATGTCGATCGTGAGAGTGAGTTTTGTAGAAGAAAATCAAACGACGAGTCGCCGTCGTCGTCGTCTTTGTCGTGTATTTCTTATTCGTTGTCTTCGAATTCTTCTTCGGCTTCGTCGTCAGATCGTTACAACAACCGACGGCGCTCTAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA
Protein sequence
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGALGSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLAKEFIRWAF
Homology
BLAST of MELO3C017459.jh1 vs. NCBI nr
Match:
KAA0058272.1 (hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa])
HSP 1 Score: 370 bits (950), Expect = 5.09e-129
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG
Sbjct: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 191
BLAST of MELO3C017459.jh1 vs. NCBI nr
Match:
TYK11824.1 (hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa])
HSP 1 Score: 367 bits (943), Expect = 5.94e-128
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSSSPRRHVDRESEFCRRKSND SPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG
Sbjct: 121 GSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 191
BLAST of MELO3C017459.jh1 vs. NCBI nr
Match:
KGN65459.1 (hypothetical protein Csa_020126 [Cucumis sativus])
HSP 1 Score: 341 bits (874), Expect = 1.90e-117
Identity = 176/191 (92.15%), Postives = 183/191 (95.81%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKK+GAL
Sbjct: 61 LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSS PRRHVDR+SEFCR+KSNDES SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLG
Sbjct: 121 GSSS-PRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 190
BLAST of MELO3C017459.jh1 vs. NCBI nr
Match:
XP_022987494.1 (uncharacterized protein LOC111485037 [Cucurbita maxima])
HSP 1 Score: 213 bits (543), Expect = 3.95e-67
Identity = 132/191 (69.11%), Postives = 143/191 (74.87%), Query Frame = 0
Query: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
DH LH SE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 4 DHRLHP-SENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
Query: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRRAVKKNGALGSS 124
+PSE PPP + G SKTPH VPKQ KIW W K R+K R VKKNGA GSS
Sbjct: 64 KPSEN---LHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 123
Query: 125 SSPRRHVDRESEFCRRKSNDESPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 184
SS R HV++ESEFCR KSNDES SS SSLSCIS+SLSS S+SSS+ Y RRRSKL
Sbjct: 124 SSSRPHVNQESEFCR-KSNDESSSSTTPSSLSCISHSLSS---SSSSSNGY-ARRRSKLS 183
Query: 185 SLAKEFIRWAF 191
SLAK F+RWAF
Sbjct: 184 SLAKGFLRWAF 185
BLAST of MELO3C017459.jh1 vs. NCBI nr
Match:
KAG6589705.1 (Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 206 bits (523), Expect = 9.69e-61
Identity = 128/185 (69.19%), Postives = 142/185 (76.76%), Query Frame = 0
Query: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
+H LH LSE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 4 EHRLH-LSENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
Query: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRRAVKKNGALGSS 124
+PSE + PP +S G SKTPH VP+Q KIWFW K R+K R VKKNGA GSS
Sbjct: 64 KPSEN---LQPPPSPNSVQGASKTPHQVPEQQEAAKIWFWMKPRKKLRNVVKKNGAFGSS 123
Query: 125 SSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLGSLA 184
SS RRHV++ESEF R KSNDES SSSLSCIS+SLSS S+SSS+ Y RRRSKL SLA
Sbjct: 124 SSSRRHVNQESEFYR-KSNDES--SSSLSCISHSLSS---SSSSSNGY-ARRRSKLSSLA 177
Query: 185 KEFIR 188
K F+R
Sbjct: 184 KGFLR 177
BLAST of MELO3C017459.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UQX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005980 PE=4 SV=1)
HSP 1 Score: 370 bits (950), Expect = 2.46e-129
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG
Sbjct: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 191
BLAST of MELO3C017459.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3CKX4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00370 PE=4 SV=1)
HSP 1 Score: 367 bits (943), Expect = 2.88e-128
Identity = 190/191 (99.48%), Postives = 190/191 (99.48%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL
Sbjct: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSSSPRRHVDRESEFCRRKSND SPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG
Sbjct: 121 GSSSSPRRHVDRESEFCRRKSNDGSPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 191
BLAST of MELO3C017459.jh1 vs. ExPASy TrEMBL
Match:
A0A0A0LWV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1)
HSP 1 Score: 341 bits (874), Expect = 9.19e-118
Identity = 176/191 (92.15%), Postives = 183/191 (95.81%), Query Frame = 0
Query: 1 MAAKDHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPG 60
MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPG
Sbjct: 1 MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPG 60
Query: 61 LPKNQPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKNGAL 120
LPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKK+GAL
Sbjct: 61 LPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKSRRAVKKSGAL 120
Query: 121 GSSSSPRRHVDRESEFCRRKSNDESPSSSSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 180
GSSS PRRHVDR+SEFCR+KSNDES SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLG
Sbjct: 121 GSSS-PRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLG 180
Query: 181 SLAKEFIRWAF 191
SLAKEFIRWAF
Sbjct: 181 SLAKEFIRWAF 190
BLAST of MELO3C017459.jh1 vs. ExPASy TrEMBL
Match:
A0A6J1JJ17 (uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037 PE=4 SV=1)
HSP 1 Score: 213 bits (543), Expect = 1.91e-67
Identity = 132/191 (69.11%), Postives = 143/191 (74.87%), Query Frame = 0
Query: 5 DHTLHRLSEKPFSLLQANQFFVHKILSRNSSFGRSARLPACGLPGQIPFNWETQPGLPKN 64
DH LH SE PFSLLQAN+ FVHKILSRNSS GRSARLPAC LPGQIPF WE QPGLPK+
Sbjct: 4 DHRLHP-SENPFSLLQANELFVHKILSRNSSVGRSARLPACRLPGQIPFIWEAQPGLPKD 63
Query: 65 QPSETPPPAELPPPSSSAFGLSKTPHVVPKQAPV-KIWFWNKQRRKSRRAVKKNGALGSS 124
+PSE PPP + G SKTPH VPKQ KIW W K R+K R VKKNGA GSS
Sbjct: 64 KPSEN---LHPPPPPNYVDGTSKTPHQVPKQQEAAKIWSWMKPRKKLRNVVKKNGAFGSS 123
Query: 125 SSPRRHVDRESEFCRRKSNDESPSS---SSLSCISYSLSSNSSSASSSDRYNNRRRSKLG 184
SS R HV++ESEFCR KSNDES SS SSLSCIS+SLSS S+SSS+ Y RRRSKL
Sbjct: 124 SSSRPHVNQESEFCR-KSNDESSSSTTPSSLSCISHSLSS---SSSSSNGY-ARRRSKLS 183
Query: 185 SLAKEFIRWAF 191
SLAK F+RWAF
Sbjct: 184 SLAKGFLRWAF 185
BLAST of MELO3C017459.jh1 vs. ExPASy TrEMBL
Match:
A0A314YA94 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07660 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 8.20e-15
Identity = 72/208 (34.62%), Postives = 108/208 (51.92%), Query Frame = 0
Query: 14 KPFSLLQANQFFVHKILSRNSSFGRSA-RLPACG-LPGQIPFNWETQPGLPKNQP----- 73
K ++ AN+FF +KILSRNSS G S+ R G + G +PF WE +PG PK +
Sbjct: 12 KTLAIFPANEFFYNKILSRNSSVGSSSSRSYYFGRVTGSVPFQWEAKPGKPKLEAHDEEQ 71
Query: 74 --------SETPPPAELPPPSSSAFGLSKTPHVVPKQAPVKIWFW------NKQRRKSRR 133
++ PP PPP++ + ++ P+ + ++W W +K +RK ++
Sbjct: 72 QQHQNFDFAQNPPLIIGPPPATQSLNMNSLPYSSGPFSNSRVWLWKKLKKTHKLKRKLKK 131
Query: 134 AVKKNGALGSSSSPRRHVDRESEFCRRKSNDE-----SPSSSSLSCISYSLSSNSS---- 191
K NG ++ + +++ C KS++E S SSS SC S SLSS +S
Sbjct: 132 INKNNGEGNFDNAGLEQLYHQADLC--KSDEEIMKFGSYGSSSSSCNSSSLSSTASASGS 191
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0058272.1 | 5.09e-129 | 100.00 | hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa] | [more] |
TYK11824.1 | 5.94e-128 | 99.48 | hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa] | [more] |
KGN65459.1 | 1.90e-117 | 92.15 | hypothetical protein Csa_020126 [Cucumis sativus] | [more] |
XP_022987494.1 | 3.95e-67 | 69.11 | uncharacterized protein LOC111485037 [Cucurbita maxima] | [more] |
KAG6589705.1 | 9.69e-61 | 69.19 | Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. s... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7UQX0 | 2.46e-129 | 100.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CKX4 | 2.88e-128 | 99.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LWV3 | 9.19e-118 | 92.15 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G423170 PE=4 SV=1 | [more] |
A0A6J1JJ17 | 1.91e-67 | 69.11 | uncharacterized protein LOC111485037 OS=Cucurbita maxima OX=3661 GN=LOC111485037... | [more] |
A0A314YA94 | 8.20e-15 | 34.62 | Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_076... | [more] |
Match Name | E-value | Identity | Description | |