MELO3C017416.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C017416.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCyclin-dependent protein kinase inhibitor SMR6-like protein
Locationchr02: 21368058 .. 21368547 (-)
RNA-Seq ExpressionMELO3C017416.jh1
SyntenyMELO3C017416.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATTTCCACTCAATATTTCTCCTCCAAACTTACAAATGGGTATGGAAATTCTAGATGAATTCTCTCCACTTACACCATTATCTTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAACAACAACAACAAGAAGATGATCAAGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCGCCGGCGCCAAAGAAACCTCGTCCTCCTCGAAGGAAATTGAACTTTCTACCACCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTCTATTTTCAGCTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAATTCTTGTTCTTTTTTCTTTAATAATTATTGATTTTAACATGGGTATGTGTATAACTGAACAAATTCATGAAAACCAACCATTGTATTTCTAATTCATTATCTCTTCCTCTCTCTATATATAATTTTATTCCCTTT

mRNA sequence

TCAATTTCCACTCAATATTTCTCCTCCAAACTTACAAATGGGTATGGAAATTCTAGATGAATTCTCTCCACTTACACCATTATCTTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAACAACAACAACAAGAAGATGATCAAGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCGCCGGCGCCAAAGAAACCTCGTCCTCCTCGAAGGAAATTGAACTTTCTACCACCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTCTATTTTCAGCTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAATTCTTGTTCTTTTTTCTTTAATAATTATTGATTTTAACATGGGTATGTGTATAACTGAACAAATTCATGAAAACCAACCATTGTATTTCTAATTCATTATCTCTTCCTCTCTCTATATATAATTTTATTCCCTTT

Coding sequence (CDS)

ATGGGTATGGAAATTCTAGATGAATTCTCTCCACTTACACCATTATCTTCCCTTCAATTCATCATCCCCAAACATAAAACAGAACAACAACAACAACAACAACAAGAAGATGATCAAGAAGAAGAATGTCTCACTCCCACCGCCGCCGCCGCCCGCCTGAAGCCCGCCATCATCTGTCCGCCGGCGCCAAAGAAACCTCGTCCTCCTCGAAGGAAATTGAACTTTCTACCACCTCCATTCTTTGAAGCTCCACAAGATCTCAATTCTGTCTATTTTCAGCTCCATATTCCTTCCAAGAAAATCAAACCCATTCACTAA

Protein sequence

MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAARLKPAIICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPIH
Homology
BLAST of MELO3C017416.jh1 vs. NCBI nr
Match: KGN65496.1 (hypothetical protein Csa_019987 [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 5.04e-62
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAARLKPAIICP 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQ    +DQEEECLTPTAAAARLKPAIICP
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQ----EDQEEECLTPTAAAARLKPAIICP 60

Query: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPIH 105
           PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQ HIPSKKIKPIH
Sbjct: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 101

BLAST of MELO3C017416.jh1 vs. NCBI nr
Match: KAG6589677.1 (hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146 bits (368), Expect = 3.96e-43
Identity = 74/104 (71.15%), Postives = 84/104 (80.77%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAARLKPAIICP 60
           MGME+L+EF PLTPL SL   +PK K +Q  Q+Q      E+C TPTAAA RLKP ++CP
Sbjct: 1   MGMEVLEEFRPLTPLRSLSLQLPKEKADQNIQEQ------EDCQTPTAAATRLKPTMVCP 60

Query: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPI 104
           PAPKKPRPPRRKLNFLPPPFFEAPQDL+SVY +L IPSKKIKPI
Sbjct: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLSSVYIELQIPSKKIKPI 98

BLAST of MELO3C017416.jh1 vs. NCBI nr
Match: KAG6587720.1 (hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (326), Expect = 1.02e-36
Identity = 72/107 (67.29%), Postives = 81/107 (75.70%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLS---SLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAARLKPAI 60
           MGME++DEF PLTPL    SLQ  IPK + + Q+QQ       EEC TPTAA +RLKP +
Sbjct: 1   MGMEVMDEFRPLTPLRLTPSLQ--IPKERRDFQEQQP------EECQTPTAAGSRLKPTM 60

Query: 61  ICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPI 104
            CPPAPKKPRPPRRKLNF PP FF+APQDL SVYF+L  PSKKIKPI
Sbjct: 61  ECPPAPKKPRPPRRKLNFQPPSFFDAPQDLKSVYFELQFPSKKIKPI 99

BLAST of MELO3C017416.jh1 vs. NCBI nr
Match: GAV59718.1 (hypothetical protein CFOL_v3_03249 [Cephalotus follicularis])

HSP 1 Score: 78.6 bits (192), Expect = 2.92e-16
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFI-------IPKHKTEQQQQQQQEDDQEEECLTPTAAAARL 60
           MG+E+ +EF P+T + ++          + K    ++ Q+    D EEEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPAIICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPI 104
              ++CPPAP K RPP+RKL   P  FFE P DL S++F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

BLAST of MELO3C017416.jh1 vs. NCBI nr
Match: KAE8056731.1 (hypothetical protein FH972_013476 [Carpinus fangiana])

HSP 1 Score: 75.9 bits (185), Expect = 3.26e-15
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFI-IPKHKTEQQQQQQQEDD--QEEECLTPTAAAARLKPAI 60
           MG+EIL+EF P+TP+ ++       H TE  + ++ ++    + EC TP ++   LK  +
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  ICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQ-LHIPSKKIK 102
           +CPPAPKKPRP RRKL+  P   F+ P DL SV F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

BLAST of MELO3C017416.jh1 vs. ExPASy TrEMBL
Match: A0A0A0M005 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1)

HSP 1 Score: 194 bits (492), Expect = 2.44e-62
Identity = 99/105 (94.29%), Postives = 100/105 (95.24%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAARLKPAIICP 60
           MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQ    +DQEEECLTPTAAAARLKPAIICP
Sbjct: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQQ----EDQEEECLTPTAAAARLKPAIICP 60

Query: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPIH 105
           PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQ HIPSKKIKPIH
Sbjct: 61  PAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQFHIPSKKIKPIH 101

BLAST of MELO3C017416.jh1 vs. ExPASy TrEMBL
Match: A0A1Q3AVG9 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.42e-16
Identity = 47/111 (42.34%), Postives = 67/111 (60.36%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFI-------IPKHKTEQQQQQQQEDDQEEECLTPTAAAARL 60
           MG+E+ +EF P+T + ++          + K    ++ Q+    D EEEC TP +A + L
Sbjct: 1   MGLEMPEEFRPITTIRTVSTARLTSFSYVSKISDSKKTQELNGLDNEEECQTPKSAESTL 60

Query: 61  KPAIICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKIKPI 104
              ++CPPAP K RPP+RKL   P  FFE P DL S++F L+ PSKKI+PI
Sbjct: 61  --ILVCPPAPSKARPPKRKLCPPPQGFFEVPHDLASLFFSLNTPSKKIRPI 109

BLAST of MELO3C017416.jh1 vs. ExPASy TrEMBL
Match: A0A5N6R7V3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.58e-15
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFI-IPKHKTEQQQQQQQEDD--QEEECLTPTAAAARLKPAI 60
           MG+EIL+EF P+TP+ ++       H TE  + ++ ++    + EC TP ++   LK  +
Sbjct: 1   MGLEILEEFRPVTPIRTISITRSSSHATELSEPEETKEVALDDVECHTPKSSVHTLKSPL 60

Query: 61  ICPPAPKKPRPPRRKLNFLPPPFFEAPQDLNSVYFQ-LHIPSKKIK 102
           +CPPAPKKPRP RRKL+  P   F+ P DL SV F  L  PSKKI+
Sbjct: 61  VCPPAPKKPRPARRKLSPPPQRIFQVPHDLASVVFMSLTKPSKKIR 106

BLAST of MELO3C017416.jh1 vs. ExPASy TrEMBL
Match: A0A059CL15 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.02e-12
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPL--------SSLQFIIPKHKTEQQQQQQQEDDQEEECLTPTAAAAR 60
           MGM + +EF P TP+        S L  + P  +    +Q     D E+EC TP +    
Sbjct: 1   MGMGVSEEFRPSTPIRTIVVSSGSKLSDLAPCER----KQLHSSPDDEDECRTPKSCPDP 60

Query: 61  LK--PAIICPPAPKKPRPPRRKLNFLPPP-FFEAPQDLNSVYFQLHIPSKKIK 102
           +    A  CPPAPKKPRPPRRK +  PP  FF+ P DL SV+  +  PSKKI+
Sbjct: 61  MTGHTARACPPAPKKPRPPRRKASGPPPQGFFQVPHDLASVFLVIGKPSKKIR 109

BLAST of MELO3C017416.jh1 vs. ExPASy TrEMBL
Match: V7B2R0 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G233800g PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.17e-11
Identity = 41/106 (38.68%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 1   MGMEILDEFSPLTPLSSLQFIIPKHKTEQQQ----QQQQEDDQEEECLTPTAAAARLKPA 60
           MG++IL+EF P+TP+ +   ++P ++T +      ++   +D  EEC TPT+ + +L+  
Sbjct: 1   MGLQILEEFRPITPIRT---VVPTNRTLKHDLGTTKEVVNEDVVEECHTPTSPSQKLRTP 60

Query: 61  IICPPAPKKPR-PPRRKLNFLPPPFFEAPQDLNSVYFQLHIPSKKI 101
           ++CPPAPKKPR PPRR L+     FF    DL S+ F L  P++ +
Sbjct: 61  LVCPPAPKKPRVPPRRNLDPPSEGFFSVSHDLASI-FVLRTPNQPL 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN65496.15.04e-6294.29hypothetical protein Csa_019987 [Cucumis sativus][more]
KAG6589677.13.96e-4371.15hypothetical protein SDJN03_15100, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6587720.11.02e-3667.29hypothetical protein SDJN03_16285, partial [Cucurbita argyrosperma subsp. sorori... [more]
GAV59718.12.92e-1642.34hypothetical protein CFOL_v3_03249 [Cephalotus follicularis][more]
KAE8056731.13.26e-1544.34hypothetical protein FH972_013476 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0052.44e-6294.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G426970 PE=4 SV=1[more]
A0A1Q3AVG91.42e-1642.34Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_03249 PE=4... [more]
A0A5N6R7V31.58e-1544.34Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013476 PE=4 SV=1[more]
A0A059CL155.02e-1241.59Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_C00076 PE=4 SV... [more]
V7B2R01.17e-1138.68Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G233800g PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..77
NoneNo IPR availablePANTHERPTHR35162:SF2OS08G0516600 PROTEINcoord: 1..102
NoneNo IPR availablePANTHERPTHR35162OS08G0516600 PROTEINcoord: 1..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C017416.jh1.t1MELO3C017416.jh1.t1mRNA