MELO3C017050.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C017050.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Late embryogenesis abundant protein group 8 protein
Location	chr07: 274165 .. 274784 (-)
RNA-Seq Expression	MELO3C017050.jh1
Synteny	MELO3C017050.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCGAATATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATTCATTGATCTCCCCATCATCCATGCCGTTTACAGTTTCTCTTTTGTTTCAATGTAATCTAAATTTTGATCTCATTTCTGCCATTTTTCTTCTCAAGCACAAGGTGGCTGCAACAAAAACCCAATCTTGTTCTTGTAGGATAGCAATTGTTTCAAATGTTGTATTGAAATTATCACATTTTTCTTCATGCATCCTATTGAGCTTCCAAGTTTATGAAACGGGTTCGTTTGTGGATTATTTCCTAATTTGATTAGAAGTTTTTGGAAAGTGGTCCATTGCCATCACTATATTTCTCACCTTTTTCATGAATTCATCACATATCTACGAGGCAAGTTCTTGTTTTTTCCTTTAAAA

mRNA sequence

GTCGAATATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATTCATTGATCTCCCCATCATCCATGCCGTTTACAGTTTCTCTTTTGTTTCAATGTAATCTAAATTTTGATCTCATTTCTGCCATTTTTCTTCTCAAGCACAAGGTGGCTGCAACAAAAACCCAATCTTGTTCTTGTAGGATAGCAATTGTTTCAAATGTTGTATTGAAATTATCACATTTTTCTTCATGCATCCTATTGAGCTTCCAAGTTTATGAAACGGGTTCGTTTGTGGATTATTTCCTAATTTGATTAGAAGTTTTTGGAAAGTGGTCCATTGCCATCACTATATTTCTCACCTTTTTCATGAATTCATCACATATCTACGAGGCAAGTTCTTGTTTTTTCCTTTAAAA

Coding sequence (CDS)

ATGGAAGAGCAGGGACAGCACCAAATGATGGGTAAGATGGAAGAGAAGGCCCCGGTGGAGGATTTGCTGCCATTAGAGAGCAGTCCGTACGTGAAATACAAAGACTTGGAAGAGTATAAAAGGAAAGGGTATGGGGCGGAGGGGCATCTTGAGCCCAAGCCTAATCAGGGCGGCGGCACCGACGCACCCACCTTGTCCGGCAGCGGCTATCCGGAGGTGCAGCCCACCACCATTGATGTCGTTACCAAACAAGGCCTTATTCATTGA

Protein sequence

MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPEVQPTTIDVVTKQGLIH

Homology

[Close]

BLAST of MELO3C017050.jh1 vs. NCBI nr
Match: KAA0064662.1 (late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >TYK19929.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 1.80e-57
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT
Sbjct: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60

Query: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88
          DAPTLSGSGYPEVQPTTIDVVTKQGLIH
Sbjct: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88

[Close]

BLAST of MELO3C017050.jh1 vs. NCBI nr
Match: KAE8649966.1 (hypothetical protein Csa_012992 [Cucumis sativus])

HSP 1 Score: 170 bits (431), Expect = 3.70e-53
Identity = 83/87 (95.40%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGT
Sbjct: 4  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGT 63

Query: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLI 87
          DAPTLSGSG PEVQPTTID+VTKQGLI
Sbjct: 64 DAPTLSGSGLPEVQPTTIDIVTKQGLI 90

[Close]

BLAST of MELO3C017050.jh1 vs. NCBI nr
Match: XP_023535424.1 (uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (360), Expect = 2.67e-42
Identity = 69/86 (80.23%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 2  EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 61
          E+Q Q Q++ + EEKA VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD
Sbjct: 7  EQQQQQQLVREKEEKASVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 66

Query: 62 APTLSGSGYPEVQPTTIDVVTKQGLI 87
          APTLSGSG+PEV+P TID VT  GL+
Sbjct: 67 APTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of MELO3C017050.jh1 vs. NCBI nr
Match: XP_022937316.1 (uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothetical protein SDJN03_13547, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024086.1 hypothetical protein SDJN02_12899, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140 bits (354), Expect = 2.19e-41
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 2  EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 61
          E+Q Q Q++ + EEK  VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD
Sbjct: 7  EQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 66

Query: 62 APTLSGSGYPEVQPTTIDVVTKQGLI 87
          APTLSGSG+PEV+P TID VT  GL+
Sbjct: 67 APTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of MELO3C017050.jh1 vs. NCBI nr
Match: XP_022135734.1 (uncharacterized protein LOC111007621 [Momordica charantia])

HSP 1 Score: 134 bits (338), Expect = 7.67e-39
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 4   QGQHQMMGKMEE-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG---GG 63
           Q Q + MGK EE KA VE+LLPLESSPYVKYKDLEEYKR+GYGAEGHLEPKPNQG   GG
Sbjct: 13  QPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHLEPKPNQGQGGGG 72

Query: 64  TDAPTLSGSGYPEVQPTTIDVVTKQGLI 87
           TDAPTLSG+G+PEV+P+TIDV T QGLI
Sbjct: 73  TDAPTLSGAGFPEVKPSTIDVATNQGLI 100

[Close]

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V8I8 (Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00410 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 8.72e-58
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60
          MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT
Sbjct: 1  MEEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGT 60

Query: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88
          DAPTLSGSGYPEVQPTTIDVVTKQGLIH
Sbjct: 61 DAPTLSGSGYPEVQPTTIDVVTKQGLIH 88

[Close]

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L5Y6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1)

HSP 1 Score: 147 bits (370), Expect = 2.58e-43
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 13  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTDAPTLSGSGYPE 72
           MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYG EGHL PKPNQGGGTDAPTLSGSG PE
Sbjct: 80  MEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGVEGHLVPKPNQGGGTDAPTLSGSGLPE 139

Query: 73  VQPTTIDVVTKQGLI 87
           VQPTTID+VTKQGLI
Sbjct: 140 VQPTTIDIVTKQGLI 154

[Close]

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FA12 (uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC111443639 PE=4 SV=1)

HSP 1 Score: 140 bits (354), Expect = 1.06e-41
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 2  EEQGQHQMMGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 61
          E+Q Q Q++ + EEK  VE+LLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD
Sbjct: 7  EQQQQQQLVREKEEKDSVEELLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGGTD 66

Query: 62 APTLSGSGYPEVQPTTIDVVTKQGLI 87
          APTLSGSG+PEV+P TID VT  GL+
Sbjct: 67 APTLSGSGFPEVKPATIDFVTNHGLL 92

[Close]

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL
Match: A0A6J1C2A9 (uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007621 PE=4 SV=1)

HSP 1 Score: 134 bits (338), Expect = 3.72e-39
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 4   QGQHQMMGKMEE-KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQG---GG 63
           Q Q + MGK EE KA VE+LLPLESSPYVKYKDLEEYKR+GYGAEGHLEPKPNQG   GG
Sbjct: 13  QPQTRTMGKREEEKASVEELLPLESSPYVKYKDLEEYKREGYGAEGHLEPKPNQGQGGGG 72

Query: 64  TDAPTLSGSGYPEVQPTTIDVVTKQGLI 87
           TDAPTLSG+G+PEV+P+TIDV T QGLI
Sbjct: 73  TDAPTLSGAGFPEVKPSTIDVATNQGLI 100

[Close]

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL
Match: B9T4J9 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.99e-21
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MEEQGQHQMMGKMEE-------KAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPK 60
          ME++GQ   + + E+       K  V+ +LP++ SPY++YKDLE+YK+KGYG EGHL+PK
Sbjct: 1  MEKEGQENTIERKEDINRDQHKKESVDQILPIKDSPYLQYKDLEDYKKKGYGTEGHLQPK 60

Query: 61 PNQGGG-TDAPTLSGSGYP-EVQPTTIDVVTKQ 84
          P +G G TDAPTLSG   P E   +TID +T +
Sbjct: 61 PGRGAGATDAPTLSGGSVPREADVSTIDAITSK 93

[Close]

BLAST of MELO3C017050.jh1 vs. TAIR 10
Match: AT2G33690.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-11
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 10 MGKMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSGS 69
          M K EEK      LPLE+SPY KY+D+E+YK+  YG  GH + KP  GGG TDAPT SG 
Sbjct: 1  MSKSEEKQE----LPLETSPYTKYEDIEDYKKNAYGTSGHQDVKPGHGGGTTDAPTPSGD 59

Query: 70 GYP 72
            P
Sbjct: 61 AAP 59

[Close]

BLAST of MELO3C017050.jh1 vs. TAIR 10
Match: AT2G23110.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 12 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLS---- 71
          + E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK   GGG TDAPT S    
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLG 70

Query: 72 -GSGYPEVQPTTIDVVTKQGL 87
           G G      ++ D + +QG+
Sbjct: 71 RGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of MELO3C017050.jh1 vs. TAIR 10
Match: AT2G23110.2 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 12 KMEEKAPVEDLLPLESSPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLS---- 71
          + E K    D L    +PY+ Y +LE+YK KGYGA+GH EPK   GGG TDAPT S    
Sbjct: 11 EQEVKEVKNDDLESIKTPYLDYDNLEDYKMKGYGAQGHQEPKLGMGGGATDAPTPSGGLG 70

Query: 72 -GSGYPEVQPTTIDVVTKQGL 87
           G G      ++ D + +QG+
Sbjct: 71 RGGGAASTDLSSTDAINRQGV 91

[Close]

BLAST of MELO3C017050.jh1 vs. TAIR 10
Match: AT2G23120.1 (Late embryogenesis abundant protein, group 6 )

HSP 1 Score: 51.6 bits (122), Expect = 3.7e-07
Identity = 27/41 (65.85%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 28 SPYVKYKDLEEYKRKGYGAEGHLEPKPNQGGG-TDAPTLSG 68
          SPY+    LE+YK K YGAEGH EP P  GGG TDAPT SG
Sbjct: 30 SPYMATGTLEDYKLKAYGAEGHQEPTPGLGGGSTDAPTPSG 70

The following BLAST results are available for this feature:

BLAST of MELO3C017050.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064662.1	1.80e-57	100.00	late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa] >...	[more]
KAE8649966.1	3.70e-53	95.40	hypothetical protein Csa_012992 [Cucumis sativus]	[more]
XP_023535424.1	2.67e-42	80.23	uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]	[more]
XP_022937316.1	2.19e-41	79.07	uncharacterized protein LOC111443639 [Cucurbita moschata] >KAG6591201.1 hypothet...	[more]
XP_022135734.1	7.67e-39	79.55	uncharacterized protein LOC111007621 [Momordica charantia]	[more]

BLAST of MELO3C017050.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C017050.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8I8	8.72e-58	100.00	Late embryogenesis abundant protein group 8 protein OS=Cucumis melo var. makuwa ...	[more]
A0A0A0L5Y6	2.58e-43	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664380 PE=4 SV=1	[more]
A0A6J1FA12	1.06e-41	79.07	uncharacterized protein LOC111443639 OS=Cucurbita moschata OX=3662 GN=LOC1114436...	[more]
A0A6J1C2A9	3.72e-39	79.55	uncharacterized protein LOC111007621 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
B9T4J9	2.99e-21	49.46	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0396800 PE=4 SV=1	[more]

BLAST of MELO3C017050.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33690.1	1.1e-11	55.56	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.1	1.4e-09	43.21	Late embryogenesis abundant protein, group 6	[more]
AT2G23110.2	1.4e-09	43.21	Late embryogenesis abundant protein, group 6	[more]
AT2G23120.1	3.7e-07	65.85	Late embryogenesis abundant protein, group 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018930	Late embryogenesis abundant protein, LEA-18	PFAM	PF10714	LEA_6	coord: 16..86 e-value: 1.1E-27 score: 95.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR33922:SF15	SUBFAMILY NOT NAMED	coord: 2..87
None	No IPR available	PANTHER	PTHR33922	OS01G0888066 PROTEIN-RELATED	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017050.jh1.t1	MELO3C017050.jh1.t1	mRNA