MELO3C016838.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016838.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pre-mRNA-processing protein 40A isoform X1
Location	chr07: 1846861 .. 1847262 (+)
RNA-Seq Expression	MELO3C016838.jh1
Synteny	MELO3C016838.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

mRNA sequence

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Coding sequence (CDS)

ATGGCCTGCAACAACAAAACCCATTCAAGAGGAAGAGTGGCTTTCTCGTGGGAGAATAGGCCCGGGGTGTGCAAAGCAGCGGTGGCGCCACCGAACCGCTTCTGTGACGACAACGACGACGACCCGTTGAAGAAGAAGCTGCAGCCACCGCCCTGTACTCCGGCGAGAAAGGGCAACAAGAAGCTGCTGCAGAAAGATGGGGGCGCTGAAGACCCTTTTCTTGCGGCGTACAGAGAGTGCACGAGTGAAGATGATGAGAAGAATTGTAAGTTGAAGAAGAATAAATATGGGTTTGGAGGGTGGATGACGATGAACTTTTTTGGTAATCTGTCTTGTAAGCAATTGACGGCGGTTCGAGATGATAGTTTGATTAGTTCCCCTGTTTCTAAACGAACAGTGTAA

Protein sequence

MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRDDSLISSPVSKRTV

Homology

[Close]

BLAST of MELO3C016838.jh1 vs. NCBI nr
Match: KAA0064468.1 (hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK20120.1 hypothetical protein E5676_scaffold134G002450 [Cucumis melo var. makuwa])

HSP 1 Score: 287 bits (735), Expect = 3.87e-98
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
           MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
           KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 133
           DSLISSPVSKRTV
Sbjct: 121 DSLISSPVSKRTV 133

[Close]

BLAST of MELO3C016838.jh1 vs. NCBI nr
Match: KAE8649893.1 (hypothetical protein Csa_012691 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 2.44e-51
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
          MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNK
Sbjct: 1  MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDG--DDPLKKQLQPPPCTPARKGNK 60

Query: 61 KLLQKDGGAEDPFLAAYRECTSEDDEKNCKL 91
          KL QKDGGAEDPFLAAY+ECTSEDDEK C L
Sbjct: 61 KL-QKDGGAEDPFLAAYKECTSEDDEKTCPL 88

[Close]

BLAST of MELO3C016838.jh1 vs. NCBI nr
Match: KAG7024319.1 (hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142 bits (357), Expect = 2.43e-40
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
          M C+N+ HSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG K
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQK 60

Query: 61 KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF 98
          K+ QKDG  EDPFLAA+REC++ +DEKNCKLK+NK GF
Sbjct: 61 KV-QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

[Close]

BLAST of MELO3C016838.jh1 vs. NCBI nr
Match: KAG6591440.1 (Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142 bits (357), Expect = 4.37e-36
Identity = 69/98 (70.41%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1  MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
          M C+N+ HSRGRVAFSWEN+PG CKAAVAPP  F    DDD  +KKL+PPPCT ARKG K
Sbjct: 1  MTCSNRAHSRGRVAFSWENKPGECKAAVAPP--FYRLGDDDLGQKKLRPPPCTSARKGQK 60

Query: 61 KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGF 98
          K+ QKDG  EDPFLAA+REC++ +DEKNCKLK+NK GF
Sbjct: 61 KV-QKDGVFEDPFLAAFRECSNGEDEKNCKLKQNKTGF 95

[Close]

BLAST of MELO3C016838.jh1 vs. NCBI nr
Match: OMO70852.1 (hypothetical protein COLO4_28461 [Corchorus olitorius])

HSP 1 Score: 79.3 bits (194), Expect = 1.17e-15
Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTP----------- 65
           K HS+G V FSWEN+PGVCK          D   +D   +KL PPPC P           
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQ------DCLKEDFFLQKLPPPPCPPETARVSISNSI 64

Query: 66  ---------------ARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFG 124
                          +R  +++ L+K   ++DPFLAAY+ECT   ++   KL KN  G G
Sbjct: 65  QDNKIPPPPGAFQPPSRSSSRRGLKK---SDDPFLAAYKECTKSTNKG--KLAKNVNGGG 124

[Close]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VA56 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002450 PE=4 SV=1)

HSP 1 Score: 287 bits (735), Expect = 1.87e-98
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
           MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK
Sbjct: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60

Query: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
           KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD
Sbjct: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 133
           DSLISSPVSKRTV
Sbjct: 121 DSLISSPVSKRTV 133

[Close]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L2M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1)

HSP 1 Score: 246 bits (627), Expect = 5.06e-82
Identity = 119/133 (89.47%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTPARKGNK 60
           MACNNKTHSRGRVAFSWEN+PGVCKAAVAPP+ FCD   DDPLKK+LQPPPCTPARKGNK
Sbjct: 1   MACNNKTHSRGRVAFSWENKPGVCKAAVAPPHGFCDG--DDPLKKQLQPPPCTPARKGNK 60

Query: 61  KLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGWMTMNFFGNLSCKQLTAVRD 120
           KL QKDGGAEDPFLAAY+ECTSEDDEK CKLKKNK GFGGWMT NFF NLSCKQLTAVRD
Sbjct: 61  KL-QKDGGAEDPFLAAYKECTSEDDEKTCKLKKNKSGFGGWMTTNFFCNLSCKQLTAVRD 120

Query: 121 DSLISSPVSKRTV 133
           DSLISSP SKRTV
Sbjct: 121 DSLISSPDSKRTV 130

[Close]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL
Match: A0A5B7BYG1 (Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043146 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.07e-19
Identity = 55/143 (38.46%), Postives = 71/143 (49.65%), Query Frame = 0


Query: 4   NNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCT---------- 63
           NNK HS+G V FSWEN+PGV K       R     D+   K KL PPPC           
Sbjct: 3   NNKVHSQGNVPFSWENKPGVSKVT-----RHDCPTDEGHFKVKLPPPPCPTENVRVSFHD 62

Query: 64  ------------PARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGGW 123
                       P+R  +K+ L+K+   +DPFL AY+ECT    +     KK+  GFG  
Sbjct: 63  LQIPLPPCAFQPPSRSSSKRGLRKE---DDPFLTAYKECTKSTRKGKLSTKKDGVGFGIR 122

[Close]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL
Match: A0A1R3HKK6 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.67e-16
Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = 0


Query: 6   KTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQPPPCTP----------- 65
           K HS+G V FSWEN+PGVCK          D   +D   +KL PPPC P           
Sbjct: 5   KVHSQGNVPFSWENKPGVCKMTSQ------DCLKEDFFLQKLPPPPCPPETARVSISNSI 64

Query: 66  ---------------ARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFG 124
                          +R  +++ L+K   ++DPFLAAY+ECT   ++   KL KN  G G
Sbjct: 65  QDNKIPPPPGAFQPPSRSSSRRGLKK---SDDPFLAAYKECTKSTNKG--KLAKNVNGGG 124

[Close]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL
Match: A0A2N9EB23 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.08e-16
Identity = 55/143 (38.46%), Postives = 68/143 (47.55%), Query Frame = 0


Query: 1   MACNNKTHSRGRVAFSWENRPGVCKAAVAPPNRFCDDNDDDPLKKKLQP----------- 60
           M  ++K HSRG + FSWEN+PGV K      N+ C    D  LK    P           
Sbjct: 1   MMSHSKAHSRGIIPFSWENKPGVSKLVT---NQECHTEGDFLLKLPTPPCPSEATTISGH 60

Query: 61  ------PPC---TPARKGNKKLLQKDGGAEDPFLAAYRECTSEDDEKNCKLKKNKYGFGG 120
                 PPC   +P+R  +KK L+K    EDPFLAAY+ECT  +  K   LK   Y  G 
Sbjct: 61  DLQIPLPPCVFQSPSRSSSKKGLRKH---EDPFLAAYKECTKSNIGKGKSLK---YDVGL 120

Query: 121 WMTMNFFGNLSCKQLTAVRDDSL 123
           W         SCK   +VRDD+L
Sbjct: 121 WFGKKMLA-FSCKCSCSVRDDNL 133

The following BLAST results are available for this feature:

BLAST of MELO3C016838.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064468.1	3.87e-98	100.00	hypothetical protein E6C27_scaffold255G001830 [Cucumis melo var. makuwa] >TYK201...	[more]
KAE8649893.1	2.44e-51	87.91	hypothetical protein Csa_012691 [Cucumis sativus]	[more]
KAG7024319.1	2.43e-40	70.41	hypothetical protein SDJN02_13133, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591440.1	4.37e-36	70.41	Pre-mRNA-processing protein 40A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
OMO70852.1	1.17e-15	35.86	hypothetical protein COLO4_28461 [Corchorus olitorius]	[more]

BLAST of MELO3C016838.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VA56	1.87e-98	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L2M9	5.06e-82	89.47	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G644710 PE=4 SV=1	[more]
A0A5B7BYG1	1.07e-19	38.46	Uncharacterized protein OS=Davidia involucrata OX=16924 GN=Din_043146 PE=4 SV=1	[more]
A0A1R3HKK6	5.67e-16	35.86	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28461 PE=4 SV=1	[more]
A0A2N9EB23	8.08e-16	38.46	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4048 PE=4 SV=1	[more]

BLAST of MELO3C016838.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..66
None	No IPR available	PANTHER	PTHR33696:SF15	SUBFAMILY NOT NAMED	coord: 4..54 coord: 49..126
None	No IPR available	PANTHER	PTHR33696	T22J18.15-RELATED	coord: 4..54 coord: 49..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016838.jh1.t1	MELO3C016838.jh1.t1	mRNA