MELO3C016740 (gene) Melon (DHL92) v4

Overview
NameMELO3C016740
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntraflagellar transport protein
Locationchr07: 2379768 .. 2381086 (+)
RNA-Seq ExpressionMELO3C016740
SyntenyMELO3C016740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATATAAAGAAAAAAATACACAAGGCAGGAAAAGAAAAACAGCCAAAACATATTTAGTAAAGTTGCACACCCAAAGAAAAGGACAAACATGTATTTCAATTATAATCAGTTTAATGTCTAATTTGCACTCTTCTTCTTATTACTGCACCTTCTTCAAACTTCAAAATCCTTGTAATGGATTAAAGCTTAGAAAATTCTTCTTCAAAGAACTAGTTGATCTGACTCGGATTAAAGTTGAAAATGTCGATGAAAGCAGCTGGCCGCTCTCCGATGAATCGGTGAGTTTTTCCTTGTCTTTCCCCATTTCTTTCTTTTCTGGATGACAGAAGGGATTTTGGATTCGATTACTTCGCCATTAATTCTGATATTGGATCGGTTTCCGATGCCGCATTCACGACTCCGTTTTTGTTTACATGGCGGTTTAGTATCATTGATCGTGCCTGTTCTTGATTGGCTGTTTTCGTTGTTATTCATTGTTGTTGATAGAATCCGCCGAGCTCATAAATCGATATGAAATTTCGCAGGATAACAAAATCGAATTAGACGCAAAGAAACATCGGGGTCGTAATTGAAGTTCAGCGCGACAGACTTCTTCCAAGAAATTGATTCAATTGCGTATCAGTTCGAGGACGACAAGGTGTTTGTGAAAATGCCTCAAGAAAGACATTGACTTGGTGTTTGTGAAAATGCATCAACGAAATTGGCATAAAAGTCAAGGAAGGGAGAGTGTGAATTCAGAAGGAGGAATCACCGTTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGCGGAGATCAATGCTGCAATTTCAAATTTAGAATATGATCGAACCGCGGCTTATTTAGAATCTCCAATATCTCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATAGCGGATGGTGCTTACAAGGCAGGTTGTAAAGCATTAACTATTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCCTCTGCTGTTGCTAAGATTCAATCTTTAATCTCCCTCACGTCTCAGCAAATTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGATTGGTTTCATTCAATATATGTTTTCTTCCATCCCCATTTGTTCTTCATTTTTTTCTCAGGGATCAGAATTTCTCTCACTGTTCTTTAATAATCATGTCTGACTGTGAATATATGTTTTTCATTTGTTCAATTTTTTTTTCTGTAAGCAAGAAACGAGTCAGTTTTTCTTGAGGACACGTCCT

mRNA sequence

TTATATAAAGAAAAAAATACACAAGGCAGGAAAAGAAAAACAGCCAAAACATATTTAGTAAAGTTGCACACCCAAAGAAAAGGACAAACATGTATTTCAATTATAATCAGTTTAATGTCTAATTTGCACTCTTCTTCTTATTACTGCACCTTCTTCAAACTTCAAAATCCTTGTAATGGATTAAAGCTTAGAAAATTCTTCTTCAAAGAACTAGTTGATCTGACTCGGATTAAAGTTGAAAATGTCGATGAAAGCAGCTGGCCGCTCTCCGATGAATCGGATAACAAAATCGAATTAGACGCAAAGAAACATCGGGGTCGTAATTGAAGTTCAGCGCGACAGACTTCTTCCAAGAAATTGATTCAATTGCGTATCAGTTCGAGGACGACAAGGTGTTTGTGAAAATGCCTCAAGAAAGACATTGACTTGGTGTTTGTGAAAATGCATCAACGAAATTGGCATAAAAGTCAAGGAAGGGAGAGTGTGAATTCAGAAGGAGGAATCACCGTTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGCGGAGATCAATGCTGCAATTTCAAATTTAGAATATGATCGAACCGCGGCTTATTTAGAATCTCCAATATCTCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATAGCGGATGGTGCTTACAAGGCAGGTTGTAAAGCATTAACTATTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCCTCTGCTGTTGCTAAGATTCAATCTTTAATCTCCCTCACGTCTCAGCAAATTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGATTGGTTTCATTCAATATATGTTTTCTTCCATCCCCATTTGTTCTTCATTTTTTTCTCAGGGATCAGAATTTCTCTCACTGTTCTTTAATAATCATGTCTGACTGTGAATATATGTTTTTCATTTGTTCAATTTTTTTTTCTGTAAGCAAGAAACGAGTCAGTTTTTCTTGAGGACACGTCCT

Coding sequence (CDS)

ATGCATCAACGAAATTGGCATAAAAGTCAAGGAAGGGAGAGTGTGAATTCAGAAGGAGGAATCACCGTTTGGAATGTGTTTGACAATGTGAAGACCACAACGAAGACTCCTGAAGCTCTAATGGCGGAGATCAATGCTGCAATTTCAAATTTAGAATATGATCGAACCGCGGCTTATTTAGAATCTCCAATATCTCCAGAGGATGAGGAACCTAGTGCGAATTCAAGAAGTCAGTATGATGTTCGAATAGCGGATGGTGCTTACAAGGCAGGTTGTAAAGCATTAACTATTGGTAAGCTTGACGAGGCTCTTCATTCGTTGAATGTTTCTCTTTCGAAATGCCCACCTGAGAAATCCTCTGCTGTTGCTAAGATTCAATCTTTAATCTCCCTCACGTCTCAGCAAATTCAGATCAGATCTTCTAATTGCCAAGAAATTTCAGAAGATTGA

Protein sequence

MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYLESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLISLTSQQIQIRSSNCQEISED
Homology
[Close]
BLAST of MELO3C016740 vs. NCBI nr
Match: XP_008452533.1 (PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo] >KAA0064371.1 uncharacterized protein E6C27_scaffold255G00720 [Cucumis melo var. makuwa] >TYK20216.1 uncharacterized protein E5676_scaffold134G003530 [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60
           MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL
Sbjct: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60

Query: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120
           ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS
Sbjct: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120

Query: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 150
           AVAKIQSLISLTSQQIQIRSSNCQEISED
Sbjct: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 149

[Close]
BLAST of MELO3C016740 vs. NCBI nr
Match: XP_011654103.1 (uncharacterized protein LOC101212714 [Cucumis sativus] >KGN55178.1 hypothetical protein Csa_012701 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-64
Identity = 136/152 (89.47%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60
           M QRN HKSQ RESVNSEGGI  WNVFD+VKTTTKTPEALM EI AAISNLEY RT AYL
Sbjct: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60

Query: 61  ESPIS---PEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120
           ESPIS   PEDEEPSANSRSQYDVR+ADGAYKAGCKALT+GKLDEALHSLNVSLSKCPPE
Sbjct: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           KSSAVAKIQSLISLTSQQ+QIRSSNCQEISED
Sbjct: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

[Close]
BLAST of MELO3C016740 vs. NCBI nr
Match: KAG6608487.1 (hypothetical protein SDJN03_01829, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 115/152 (75.66%), Postives = 132/152 (86.84%), Query Frame = 0 

Query: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60
           M QR+WHK+ +G+E+++S GGI  WNVFDNVKTTTKTPEAL+AEIN AI+NLEY R+ A+
Sbjct: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60

Query: 61  LESPIS--PEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120
           LESPIS  P+D    A+S +QYD RIAD AYKAGC AL +GKLDEALHSLNVSLSKCPPE
Sbjct: 61  LESPISPTPQDRSSGASSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           KSSAVAK+QSLISLTSQQ+QIRSSNC EISED
Sbjct: 121 KSSAVAKLQSLISLTSQQLQIRSSNCHEISED 152

[Close]
BLAST of MELO3C016740 vs. NCBI nr
Match: XP_022940904.1 (uncharacterized protein LOC111446352 [Cucurbita moschata])

HSP 1 Score: 217.2 bits (552), Expect = 9.3e-53
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 0 

Query: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60
           M QR+WHK+ +G+E+++S GGI  WNVFDNVKTTTKTPEAL+AEIN AI+NLEY R+ A+
Sbjct: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60

Query: 61  LESPIS--PEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120
           LESPIS  P+D     +S +QYD RIAD AYKAGC AL +GKLDEALHSLNVSLSKCPPE
Sbjct: 61  LESPISPTPQDRSSGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           KSSAVAK+QSLISLTS+Q+QIRSSNC EISED
Sbjct: 121 KSSAVAKLQSLISLTSKQLQIRSSNCHEISED 152

[Close]
BLAST of MELO3C016740 vs. NCBI nr
Match: XP_038899466.1 (uncharacterized protein LOC120086752 [Benincasa hispida] >XP_038899467.1 uncharacterized protein LOC120086752 [Benincasa hispida])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 117/153 (76.47%), Postives = 130/153 (84.97%), Query Frame = 0 

Query: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60
           M QR+WHK+ +  E++NS  GI  WNVFDNVKTTTKTPEALMAEINAAISN EY RT A 
Sbjct: 1   MPQRDWHKNLKEGENMNSGEGIAAWNVFDNVKTTTKTPEALMAEINAAISNFEYARTTAC 60

Query: 61  LESPISP---EDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPP 120
           L+SPISP   ED E SA+ R+QY VR+ADG+YKAGC A T+GKLDEALHSLNVSLSKCPP
Sbjct: 61  LQSPISPDDSEDGESSASLRTQYVVRMADGSYKAGCAAPTVGKLDEALHSLNVSLSKCPP 120

Query: 121 EKSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           EKSSAVAK+QSLISLTS Q+QIRSSN QEISED
Sbjct: 121 EKSSAVAKLQSLISLTSHQLQIRSSNSQEISED 153

[Close]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match: A0A5A7VF87 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003530 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.2e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60
           MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL
Sbjct: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60

Query: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120
           ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS
Sbjct: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120

Query: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 150
           AVAKIQSLISLTSQQIQIRSSNCQEISED
Sbjct: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 149

[Close]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match: A0A1S3BU07 (uncharacterized protein LOC103493531 OS=Cucumis melo OX=3656 GN=LOC103493531 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.2e-75
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 

Query: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60
           MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL
Sbjct: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60

Query: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120
           ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS
Sbjct: 61  ESPISPEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSS 120

Query: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 150
           AVAKIQSLISLTSQQIQIRSSNCQEISED
Sbjct: 121 AVAKIQSLISLTSQQIQIRSSNCQEISED 149

[Close]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match: A0A0A0L090 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639170 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 136/152 (89.47%), Postives = 140/152 (92.11%), Query Frame = 0 

Query: 1   MHQRNWHKSQGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYL 60
           M QRN HKSQ RESVNSEGGI  WNVFD+VKTTTKTPEALM EI AAISNLEY RT AYL
Sbjct: 1   MPQRNRHKSQERESVNSEGGIAAWNVFDSVKTTTKTPEALMGEIGAAISNLEYARTTAYL 60

Query: 61  ESPIS---PEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120
           ESPIS   PEDEEPSANSRSQYDVR+ADGAYKAGCKALT+GKLDEALHSLNVSLSKCPPE
Sbjct: 61  ESPISPDEPEDEEPSANSRSQYDVRMADGAYKAGCKALTVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           KSSAVAKIQSLISLTSQQ+QIRSSNCQEISED
Sbjct: 121 KSSAVAKIQSLISLTSQQLQIRSSNCQEISED 152

[Close]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match: A0A6J1FLM9 (uncharacterized protein LOC111446352 OS=Cucurbita moschata OX=3662 GN=LOC111446352 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.5e-53
Identity = 113/152 (74.34%), Postives = 131/152 (86.18%), Query Frame = 0 

Query: 1   MHQRNWHKS-QGRESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAY 60
           M QR+WHK+ +G+E+++S GGI  WNVFDNVKTTTKTPEAL+AEIN AI+NLEY R+ A+
Sbjct: 1   MPQRDWHKNPKGKENMSSGGGIAAWNVFDNVKTTTKTPEALIAEINTAIANLEYARSTAF 60

Query: 61  LESPIS--PEDEEPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPE 120
           LESPIS  P+D     +S +QYD RIAD AYKAGC AL +GKLDEALHSLNVSLSKCPPE
Sbjct: 61  LESPISPTPQDRSSGVSSSTQYDARIADEAYKAGCAALAVGKLDEALHSLNVSLSKCPPE 120

Query: 121 KSSAVAKIQSLISLTSQQIQIRSSNCQEISED 150
           KSSAVAK+QSLISLTS+Q+QIRSSNC EISED
Sbjct: 121 KSSAVAKLQSLISLTSKQLQIRSSNCHEISED 152

[Close]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match: A0A6J1BP49 (uncharacterized protein LOC111026168 OS=Momordica charantia OX=3673 GN=LOC111026168 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 8.8e-41
Identity = 98/140 (70.00%), Postives = 110/140 (78.57%), Query Frame = 0 

Query: 12  RESVNSEGGITVWNVFDNVKTTTKTPEALMAEINAAISNLEYDRTAAYLES--PISPEDE 71
           RE+V S GGI  WN FDNV  TTKTPEALMAEINAAIS +EY RT A LES  P + +D 
Sbjct: 30  RENVISVGGIMAWNAFDNVTATTKTPEALMAEINAAISKIEYARTTACLESATPPASQDG 89

Query: 72  EPSANSRSQYDVRIADGAYKAGCKALTIGKLDEALHSLNVSLSKCPPEKSSAVAKIQSLI 131
              A+   QYD R+AD AYKAGC AL +GKLD+ALHSLNVSLSKCPPEK+SAVAK+ SLI
Sbjct: 90  GSGASLMPQYDARMADEAYKAGCAALAVGKLDDALHSLNVSLSKCPPEKTSAVAKLLSLI 149

Query: 132 SLTSQQIQIRSSNCQEISED 150
           +LTSQQ+  RSSNC EISED
Sbjct: 150 TLTSQQLH-RSSNCSEISED 168

The following BLAST results are available for this feature:
BLAST of MELO3C016740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452533.11.5e-74100.00PREDICTED: uncharacterized protein LOC103493531 [Cucumis melo] >KAA0064371.1 unc... [more]
XP_011654103.12.4e-6489.47uncharacterized protein LOC101212714 [Cucumis sativus] >KGN55178.1 hypothetical ... [more]
KAG6608487.11.1e-5375.66hypothetical protein SDJN03_01829, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022940904.19.3e-5374.34uncharacterized protein LOC111446352 [Cucurbita moschata][more]
XP_038899466.11.3e-5176.47uncharacterized protein LOC120086752 [Benincasa hispida] >XP_038899467.1 unchara... [more]
BLAST of MELO3C016740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VF877.2e-75100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3BU077.2e-75100.00uncharacterized protein LOC103493531 OS=Cucumis melo OX=3656 GN=LOC103493531 PE=... [more]
A0A0A0L0901.1e-6489.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639170 PE=4 SV=1[more]
A0A6J1FLM94.5e-5374.34uncharacterized protein LOC111446352 OS=Cucurbita moschata OX=3662 GN=LOC1114463... [more]
A0A6J1BP498.8e-4170.00uncharacterized protein LOC111026168 OS=Momordica charantia OX=3673 GN=LOC111026... [more]
BLAST of MELO3C016740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016740.1MELO3C016740.1mRNA