MELO3C016702.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016702.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	translation initiation factor IF-1, chloroplastic
Location	chr07: 2963103 .. 2965584 (-)
RNA-Seq Expression	MELO3C016702.jh1
Synteny	MELO3C016702.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCATGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGTAAAGACTCATCTTCATGAATACTAGTTTTGGATCATTATTATTATTGTTGTTGTTTTTGTTGTTTCTTTTTTGCCTTTAATGTGTTGATTTTGTGACATAGTGTGTACATTGATCCCTCTTTTTTGTTTTGCCTTTTTTAGAATGTAAAATGACAAACATTTAGTTTATTTGAGCTCCTTTGGCTTAGTGATTTGTATTTGTGGATGAATCACTAGGAGTATTAGAGCTTGTGAATTTATGTCTTGTCTTGTAATTCTTTGGAACTAAAGGAAGAGGAGTTTCTAAATGATCCTAACCTATCAATTTAAGATTTTGGATTGATGCGTATTTTTAAATTTATTTTGCTTCAAAGGTTGCAGTTTTGAACTATGCAGTATCTTCTATACAAGCCTGACTTTCCACTCTTTTCAGAGTCTTGGTTGAATTATGTTTATATATACTTAAAGCTCTTTTCTGATTTCAAGTTGGTTAATGAAGATCTAGGAGGTTGTAAACTATTTTAGTTAAAAAAAAAAAAAATCCATATTTTCAACACAAGACTCTTCCTTGACTACATAAACTGACCTAAAGTTTTTTGGTTAATGAGGACCTAGGGGCATTTAGGATAAAATGTTGGTTATTTTAGTTTGGATTATAGAAATATGTGTTTGAGTTGTAAACTATTTTAGTTTAAAAAGAAAATAATCTATCTTTTCAACACAGACTCTTCCTTTAACTGTTTATTGGATCTTGGGTATGATTTGTACTTAAATCTCTGCATGCTTGACTTTGAAGGATGTGAAGGCACTAAGAACAGGGGATAACATGTACTTAAAACTCAATTGGTATTTCATATAACTTTTTTTTTTTTAATCGAATAACAAAAGTGAGGTATGAAAATATGAACCTTTTGACCTAAAGTGCTTTTTGCTAGTGTATTATACATACAGGAGTTTATTCATCTTTGTACTGGATGATGTATGGTATTGCTGGTGACGATAAAAGGCAGATCTTGAACCTTTCTTAGGTCCTTCTATTCATCTTTTTACCATTATTAGTTATTATGTCATAATTTTAAAGGTC

mRNA sequence

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCATGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGAGTTTATTCATCTTTGTACTGGATGATGTATGGTATTGCTGGTGACGATAAAAGGCAGATCTTGAACCTTTCTTAGGTCCTTCTATTCATCTTTTTACCATTATTAGTTATTATGTCATAATTTTAAAGGTC

Coding sequence (CDS)

ATGTCGAGCACAAATCTCCTCCAATTCCCTCTCCTTCAATCCCACTTCCGCCCACCGTCCACTCTTCTTTTTCCCCCCGTCAAATCCCATCTCTCCGTTGTCTCAATCTCTTTCCCCACCTCCCAATTCCTCCATACCCCTTCCCATGCTCCTCCAGGCTTCGCTCTCATGGCCAAGTCTCCAAAAAACGACACCTCCGAGCAGAAATTGAGCCATGAAGGATCCGTCGTCGAGTCTCTTCCCAATGGGATGTTCAGGGTTCGATTGGATAATGAAGACCTCATTTTAGGCTACATATCCGGTAAGATTCGGAAGAATTTTGTTCGTATTTTGCCTGGTGATAGGGTTAGGGTTGAAGTTAGTCGTTATGATTCTACCAAAGGTCGAATTGTTTATAGACTTCGAAGTAGTGGAGTTTATTCATCTTTGTACTGGATGATGTATGGTATTGCTGGTGACGATAAAAGGCAGATCTTGAACCTTTCTTAG

Protein sequence

MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSSGVYSSLYWMMYGIAGDDKRQILNLS

Homology

[Close]

BLAST of MELO3C016702.jh1 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 276 bits (705), Expect = 3.41e-92
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSS 183
           SRYDSTKGRIVYRLRSSG  SS
Sbjct: 121 SRYDSTKGRIVYRLRSSGKDSS 142

[Close]

BLAST of MELO3C016702.jh1 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 257 bits (656), Expect = 9.59e-85
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSS 183
           SRYDSTKGRIVYR+RS+   SS
Sbjct: 121 SRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of MELO3C016702.jh1 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 250 bits (639), Expect = 3.84e-82
Identity = 129/142 (90.85%), Postives = 131/142 (92.25%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSST LLQFPLLQSHFRPPSTL FP VKSHLSVVSI+FPT+QFLH PSHA  GF LMAKS
Sbjct: 1   MSSTILLQFPLLQSHFRPPSTLFFPAVKSHLSVVSITFPTTQFLHNPSHASAGFVLMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQK SHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSS 183
           SRYDSTKGRIVYRLRSS   SS
Sbjct: 121 SRYDSTKGRIVYRLRSSTKDSS 142

[Close]

BLAST of MELO3C016702.jh1 vs. NCBI nr
Match: XP_008452461.1 (PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo])

HSP 1 Score: 234 bits (596), Expect = 7.42e-76
Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG                   
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG------------------- 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSSLYWMMYGIAGDDKRQILNLS 203
                             VYSSLYWM+YGIAGDDKRQILNLS
Sbjct: 121 ------------------VYSSLYWMLYGIAGDDKRQILNLS 125

[Close]

BLAST of MELO3C016702.jh1 vs. NCBI nr
Match: XP_023535140.1 (uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228 bits (582), Expect = 1.54e-73
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLL+FPLLQ H RPPSTL FP +KSHL VVSI+FPTSQFL  PSH P  FALMAK 
Sbjct: 1   MSSTNLLRFPLLQLHSRPPSTLFFPAIKSHLPVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSS 178
           SRYDSTKGRIVYR RSS
Sbjct: 121 SRYDSTKGRIVYRHRSS 137

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.9e-30
Identity = 74/100 (74.00%), Postives = 80/100 (80.00%), Query Frame = 0


Query: 81  TSQFLHTPSHAPPGFALMAKS-PKNDTS-EQKLSHEGSVVESLPNGMFRVRLDNEDLILG 140
           T  FL  P   P   AL A S  K D S EQK  HEG ++ESLPNGMFRVRLDNEDLILG
Sbjct: 36  TLSFLAPPPLLPAAPALSAASAAKPDKSGEQKWVHEGLIMESLPNGMFRVRLDNEDLILG 95

Query: 141 YISGKIRKNFVRILPGDRVRVEVSRYDSTKGRIVYRLRSS 179
           YISGKIRKN+VRILPGDRV+VEV+RYDS+KGRIVYRLRSS
Sbjct: 96  YISGKIRKNYVRILPGDRVKVEVTRYDSSKGRIVYRLRSS 135

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot
Match: A6MMP2 (Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes OX=145284 GN=infA PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.3e-28
Identity = 57/70 (81.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 108 EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 167
           EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKLIHEGVIIESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYDST 62

Query: 168 KGRIVYRLRS 178
           KGRI+YRLR+
Sbjct: 63  KGRIIYRLRN 72

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot
Match: Q95GN5 (Translation initiation factor IF-1, chloroplastic OS=Asarum canadense OX=28498 GN=infA PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-28
Identity = 56/70 (80.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 108 EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 167
           EQKL HEG ++ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKLIHEGLIIESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYDST 62

Query: 168 KGRIVYRLRS 178
           +GRI+YRLR+
Sbjct: 63  RGRIIYRLRN 72

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot
Match: A6MMF7 (Translation initiation factor IF-1, chloroplastic OS=Chloranthus spicatus OX=13006 GN=infA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.6e-28
Identity = 56/70 (80.00%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 108 EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 167
           EQKL HEG + ESLPNGMFRVRLDNEDLILGY+SG+IR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKLIHEGLITESLPNGMFRVRLDNEDLILGYVSGRIRRSFIRILPGDRVKIEVSRYDST 62

Query: 168 KGRIVYRLRS 178
           +GRI+YRLR+
Sbjct: 63  RGRIIYRLRN 72

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.6e-28
Identity = 56/70 (80.00%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 108 EQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEVSRYDST 167
           EQK +HEG + ESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV++EVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 168 KGRIVYRLRS 178
           +GRI+YRLR+
Sbjct: 63  RGRIIYRLRN 72

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 276 bits (705), Expect = 1.65e-92
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSS 183
           SRYDSTKGRIVYRLRSSG  SS
Sbjct: 121 SRYDSTKGRIVYRLRSSGKDSS 142

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 257 bits (656), Expect = 4.64e-85
Identity = 130/142 (91.55%), Postives = 134/142 (94.37%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFP VKSHLS+ SISFPTSQFLHTPSHA P F LMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPAVKSHLSLASISFPTSQFLHTPSHASPAFVLMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSS 183
           SRYDSTKGRIVYR+RS+   SS
Sbjct: 121 SRYDSTKGRIVYRMRSTKDSSS 142

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BT96 (translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493487 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.59e-76
Identity = 124/162 (76.54%), Postives = 125/162 (77.16%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS
Sbjct: 1   MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG                   
Sbjct: 61  PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISG------------------- 120

Query: 162 SRYDSTKGRIVYRLRSSGVYSSLYWMMYGIAGDDKRQILNLS 203
                             VYSSLYWM+YGIAGDDKRQILNLS
Sbjct: 121 ------------------VYSSLYWMLYGIAGDDKRQILNLS 125

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 7.47e-74
Identity = 115/137 (83.94%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLL+FPLL  H RPPSTL FP +KSHLSVVSI+FPTSQFL  PSH P  FALMAK 
Sbjct: 1   MSSTNLLRFPLLHLHSRPPSTLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPARFALMAKP 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PK+D++EQK S+EGS+VESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSS 178
           SRYDSTKGRIVYR RSS
Sbjct: 121 SRYDSTKGRIVYRNRSS 137

[Close]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 8.53e-74
Identity = 114/137 (83.21%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 42  MSSTNLLQFPLLQSHFRPPSTLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPGFALMAKS 101
           MSSTNLLQFPLLQ   RPPST LFP +KSH+SVVSI FP+SQFLH PSH P  F  MAKS
Sbjct: 1   MSSTNLLQFPLLQFQCRPPSTFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVSFVPMAKS 60

Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           PK+++SEQK SHEGSV+ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPGDRVRVEV
Sbjct: 61  PKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 120

Query: 162 SRYDSTKGRIVYRLRSS 178
           SRYDSTKGRIVYR RS+
Sbjct: 121 SRYDSTKGRIVYRHRST 137

[Close]

BLAST of MELO3C016702.jh1 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 102 PKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRVEV 161
           P+      K   EG V ESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V+VE+
Sbjct: 64  PQVKEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEM 123

Query: 162 SRYDSTKGRIVYRLRS 178
           S YDSTKGRI++R+ S
Sbjct: 124 SVYDSTKGRIIFRMSS 139

The following BLAST results are available for this feature:

BLAST of MELO3C016702.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064332.1	3.41e-92	98.59	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]
XP_011654076.1	9.59e-85	91.55	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
XP_038899010.1	3.84e-82	90.85	translation initiation factor IF-1, chloroplastic [Benincasa hispida]	[more]
XP_008452461.1	7.42e-76	76.54	PREDICTED: translation initiation factor IF-1, chloroplastic [Cucumis melo]	[more]
XP_023535140.1	1.54e-73	83.94	uncharacterized protein LOC111796655 isoform X1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C016702.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	1.9e-30	74.00	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
A6MMP2	1.3e-28	81.43	Translation initiation factor IF-1, chloroplastic OS=Dioscorea elephantipes OX=1...	[more]
Q95GN5	3.0e-28	80.00	Translation initiation factor IF-1, chloroplastic OS=Asarum canadense OX=28498 G...	[more]
A6MMF7	6.6e-28	80.00	Translation initiation factor IF-1, chloroplastic OS=Chloranthus spicatus OX=130...	[more]
A0A370	6.6e-28	80.00	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]

BLAST of MELO3C016702.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7J3	1.65e-92	98.59	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L4Q7	4.64e-85	91.55	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A1S3BT96	3.59e-76	76.54	translation initiation factor IF-1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1IP00	7.47e-74	83.94	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]
A0A6J1FLU6	8.53e-74	83.21	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]

BLAST of MELO3C016702.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	4.2e-22	65.79	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 67..135 e-value: 0.0058 score: 25.8
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 67..134 e-value: 1.4E-34 score: 115.8
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 41..137
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 57..135 score: 23.288462
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 73..133 e-value: 1.594E-33 score: 110.303
None	No IPR available	GENE3D	2.40.50.140		coord: 61..142 e-value: 8.1E-33 score: 113.9
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 41..137
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 73..133 e-value: 6.6E-22 score: 77.1
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 61..135 score: 20.178576
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 67..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016702.jh1.t2	MELO3C016702.jh1.t2	mRNA
MELO3C016702.jh1.t1	MELO3C016702.jh1.t1	mRNA
MELO3C016702.jh1.t3	MELO3C016702.jh1.t3	mRNA
MELO3C016702.jh1.t4	MELO3C016702.jh1.t4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003743	translation initiation factor activity