MELO3C016677.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C016677.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Pentatricopeptide repeat (PPR) superfamily protein, putative
Location	chr07: 3169629 .. 3169874 (+)
RNA-Seq Expression	MELO3C016677.jh1
Synteny	MELO3C016677.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

mRNA sequence

CTAAAGGAAGCAACTTCCATACTGGACGAGATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Coding sequence (CDS)

ATGATCTTCAAGGGTTATGTGCCTCGTAATGAAAGCATAAACAAACTCGTAGACAGGTTGTGCCAGGAATGCAATATGGAGCTGTTGTGGATGGTCTTAAACAGTCTGGGAAGAGGAAATCGCATGAATATGGACACGTGGGCTAGAGTTGTTGCTTTTCTTTACAAGGAGAACCTATTGGAATCCTCCAACTTAATTGACTCATTGATCAGTTGA

Protein sequence

MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS

Homology

[Close]

BLAST of MELO3C016677.jh1 vs. NCBI nr
Match: KAA0064307.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK20279.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 148 bits (373), Expect = 1.74e-40
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL
Sbjct: 407 MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 466

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 467 ESSNLIDSLIS 477

[Close]

BLAST of MELO3C016677.jh1 vs. NCBI nr
Match: XP_008452430.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis melo])

HSP 1 Score: 148 bits (373), Expect = 3.38e-40
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL
Sbjct: 455 MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 514

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 515 ESSNLIDSLIS 525

[Close]

BLAST of MELO3C016677.jh1 vs. NCBI nr
Match: XP_004146077.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus] >KAE8649815.1 hypothetical protein Csa_012179 [Cucumis sativus])

HSP 1 Score: 142 bits (357), Expect = 6.97e-38
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWM+LNSLGRGNRMNMD WARVVAF+YKENL 
Sbjct: 457 MIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRMNMDMWARVVAFVYKENLS 516

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 517 ESSNLIDSLIS 527

[Close]

BLAST of MELO3C016677.jh1 vs. NCBI nr
Match: XP_038898311.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Benincasa hispida])

HSP 1 Score: 132 bits (332), Expect = 1.53e-34
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVP +ESINKLVDRLCQECNMELLWMV+NSLGRGNRMN+DTWAR+VAF+ KE L 
Sbjct: 407 MIFKGYVPHSESINKLVDRLCQECNMELLWMVINSLGRGNRMNVDTWARIVAFVCKEKLS 466

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 467 ESSNLIDSLIS 477

[Close]

BLAST of MELO3C016677.jh1 vs. NCBI nr
Match: XP_022131752.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charantia])

HSP 1 Score: 121 bits (303), Expect = 1.84e-30
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + KEN+ 
Sbjct: 389 MIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCKENMS 448

Query: 61  ESSNLIDSLIS 71
           E+S L+DSL+S
Sbjct: 449 EASKLVDSLVS 459

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy Swiss-Prot
Match: Q9MAG8 (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-05
Identity = 24/71 (33.80%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           M+FKGY PR + +   + +LC+   +E+L  V++SL RG   + D W+ ++  + KE ++
Sbjct: 389 MLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCKEPVI 448

Query: 61  ESSNLIDSLIS 72
             S  ID L++
Sbjct: 449 SDS--IDLLLN 457

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VBA5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004190 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.40e-41
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL
Sbjct: 407 MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 466

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 467 ESSNLIDSLIS 477

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BT71 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 1.64e-40
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL
Sbjct: 455 MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 514

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 515 ESSNLIDSLIS 525

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KZF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1)

HSP 1 Score: 142 bits (357), Expect = 2.28e-38
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPRNESINKLVDRLCQECNMELLWM+LNSLGRGNRMNMD WARVVAF+YKENL 
Sbjct: 425 MIFKGYVPRNESINKLVDRLCQECNMELLWMILNSLGRGNRMNMDMWARVVAFVYKENLS 484

Query: 61  ESSNLIDSLIS 71
           ESSNLIDSLIS
Sbjct: 485 ESSNLIDSLIS 495

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL
Match: A0A6J1BRW9 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica charantia OX=3673 GN=LOC111004838 PE=4 SV=1)

HSP 1 Score: 121 bits (303), Expect = 8.89e-31
Identity = 55/71 (77.46%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPR+ESINKLVD LCQEC++ELLWMVL+SLGRGN MNMDTWARV+A + KEN+ 
Sbjct: 389 MIFKGYVPRSESINKLVDGLCQECDVELLWMVLDSLGRGNAMNMDTWARVIALVCKENMS 448

Query: 61  ESSNLIDSLIS 71
           E+S L+DSL+S
Sbjct: 449 EASKLVDSLVS 459

[Close]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J467 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxima OX=3661 GN=LOC111481084 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 1.72e-28
Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           MIFKGYVPR+ESINKL+DRLCQE NMELLWMV NSLGRGN MN+D WARVVAF+ KE   
Sbjct: 389 MIFKGYVPRSESINKLIDRLCQESNMELLWMVANSLGRGNVMNVDIWARVVAFVCKEKPS 448

Query: 61  ESSNLIDSLIS 71
           E+S L+D LIS
Sbjct: 449 EASKLVDLLIS 459

[Close]

BLAST of MELO3C016677.jh1 vs. TAIR 10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 50.1 bits (118), Expect = 8.8e-07
Identity = 24/71 (33.80%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1   MIFKGYVPRNESINKLVDRLCQECNMELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLL 60
           M+FKGY PR + +   + +LC+   +E+L  V++SL RG   + D W+ ++  + KE ++
Sbjct: 389 MLFKGYKPRRDRLEGFLQKLCESGKLEILSKVISSLHRGIAGDADVWSVMIPTMCKEPVI 448

Query: 61  ESSNLIDSLIS 72
             S  ID L++
Sbjct: 449 SDS--IDLLLN 457

The following BLAST results are available for this feature:

BLAST of MELO3C016677.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064307.1	1.74e-40	100.00	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]
XP_008452430.1	3.38e-40	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330 [Cucum...	[more]
XP_004146077.1	6.97e-38	94.37	putative pentatricopeptide repeat-containing protein At1g53330 [Cucumis sativus]...	[more]
XP_038898311.1	1.53e-34	87.32	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53...	[more]
XP_022131752.1	1.84e-30	77.46	putative pentatricopeptide repeat-containing protein At1g53330 [Momordica charan...	[more]

BLAST of MELO3C016677.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAG8	1.2e-05	33.80	Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th...	[more]

BLAST of MELO3C016677.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VBA5	8.40e-41	100.00	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BT71	1.64e-40	100.00	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O...	[more]
A0A0A0KZF4	2.28e-38	94.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622790 PE=4 SV=1	[more]
A0A6J1BRW9	8.89e-31	77.46	putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica char...	[more]
A0A6J1J467	1.72e-28	77.46	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxi...	[more]

BLAST of MELO3C016677.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53330.1	8.8e-07	33.80	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..69
None	No IPR available	PANTHER	PTHR47933:SF24	OS05G0207200 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016677.jh1.t1	MELO3C016677.jh1.t1	mRNA