MELO3C016636.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C016636.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDihydrolipoyllysine-residue succinyltransferase
Locationchr10: 22520175 .. 22520450 (-)
RNA-Seq ExpressionMELO3C016636.jh1
SyntenyMELO3C016636.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAGTACATCATTTACTTTTTAACTATATTGATTGTTGCTACATGACATAAGTCTTTTTTGGTTACTTATTAAAAATCATTCTAATATGTCGAGGTCAGATCCAGGTGATAGAGTAGAATTGGATGAATTGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

mRNA sequence

ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAATCCAGGTGATAGAGTAGAATTGGATGAATTGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

Coding sequence (CDS)

ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAATCCAGGTGATAGAGTAGAATTGGATGAATTGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

Protein sequence

MFGIKGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYIYIVEN
Homology
BLAST of MELO3C016636.jh1 vs. NCBI nr
Match: KAG7024928.1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.9 bits (198), Expect = 1.71e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. NCBI nr
Match: XP_038897721.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 80.9 bits (198), Expect = 5.91e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 91  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 138

BLAST of MELO3C016636.jh1 vs. NCBI nr
Match: XP_022937185.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 80.9 bits (198), Expect = 5.94e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. NCBI nr
Match: KAA0025144.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 5.94e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 94  SGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 141

BLAST of MELO3C016636.jh1 vs. NCBI nr
Match: XP_008447731.1 (PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Cucumis melo])

HSP 1 Score: 80.9 bits (198), Expect = 5.94e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  SGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. ExPASy Swiss-Prot
Match: Q9FLQ4 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g55070 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.9e-10
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           GD+++ VVP + ESITDGTL   LK PGDRVE DE  AQIETDK+ I I
Sbjct: 91  GDVVEAVVPHMGESITDGTLAAFLKKPGDRVEADEAIAQIETDKVTIDI 139

BLAST of MELO3C016636.jh1 vs. ExPASy Swiss-Prot
Match: Q8H107 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26910 PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 9.9e-09
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DE  AQIETDK+ I I
Sbjct: 90  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 138

BLAST of MELO3C016636.jh1 vs. ExPASy Swiss-Prot
Match: Q89AJ6 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=sucB PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 8.7e-05
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 7  DLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
          +++++ +P L ES+TD T++K  K  GD+V+ D +   IETDK+++ I
Sbjct: 2  NIINIFIPDLPESVTDATIIKWHKKKGDKVQEDTILVDIETDKVILEI 49

BLAST of MELO3C016636.jh1 vs. ExPASy Swiss-Prot
Match: P19262 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=KGD2 PE=1 SV=2)

HSP 1 Score: 46.6 bits (109), Expect = 1.1e-04
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 11  VVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           + VPP+ ES+T+G+L +  KN GD ++ DEL A IETDK+ I +
Sbjct: 76  IEVPPMAESLTEGSLKEYTKNVGDFIKEDELLATIETDKIDIEV 119

BLAST of MELO3C016636.jh1 vs. ExPASy Swiss-Prot
Match: Q2FH26 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) OX=367830 GN=odhB PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-04
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 0

Query: 10 DVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
          +V VP L ESIT+GT+ + LKN GD VE  E   ++ETDK+ + +
Sbjct: 3  EVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEV 47

BLAST of MELO3C016636.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K5E6 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis sativus OX=3659 GN=Csa_7G212650 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.70e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 59  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 106

BLAST of MELO3C016636.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SHN5 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00450 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.88e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 94  SGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 141

BLAST of MELO3C016636.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FFV0 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111443557 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.88e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BHH7 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo OX=3656 GN=LOC103490134 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.88e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  SGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IE26 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111476401 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.88e-16
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 0

Query: 5   KGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLI 52
            GDLLDVVVPPL ESITDGTL K LKNPGDRVELDE  AQIETDK+ I
Sbjct: 95  NGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

BLAST of MELO3C016636.jh1 vs. TAIR 10
Match: AT5G55070.1 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 63.5 bits (153), Expect = 6.4e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           GD+++ VVP + ESITDGTL   LK PGDRVE DE  AQIETDK+ I I
Sbjct: 91  GDVVEAVVPHMGESITDGTLAAFLKKPGDRVEADEAIAQIETDKVTIDI 139

BLAST of MELO3C016636.jh1 vs. TAIR 10
Match: AT4G26910.2 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DE  AQIETDK+ I I
Sbjct: 89  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 137

BLAST of MELO3C016636.jh1 vs. TAIR 10
Match: AT4G26910.1 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 60.1 bits (144), Expect = 7.0e-10
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DE  AQIETDK+ I I
Sbjct: 90  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 138

BLAST of MELO3C016636.jh1 vs. TAIR 10
Match: AT4G26910.3 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 50.8 bits (120), Expect = 4.3e-07
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0

Query: 18 ESITDGTLVKSLKNPGDRVELDELFAQIETDKMLIYI 55
          ESITDGTL   LK PG+RV+ DE  AQIETDK+ I I
Sbjct: 3  ESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7024928.11.71e-1683.33Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
XP_038897721.15.91e-1683.33dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
XP_022937185.15.94e-1683.33dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
KAA0025144.15.94e-1683.33dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
XP_008447731.15.94e-1683.33PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglu... [more]
Match NameE-valueIdentityDescription
Q9FLQ48.9e-1065.31Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
Q8H1079.9e-0961.22Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
Q89AJ68.7e-0539.58Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
P192621.1e-0450.00Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
Q2FH261.5e-0448.89Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy... [more]
Match NameE-valueIdentityDescription
A0A0A0K5E62.70e-1683.33Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis sativus OX=3659 GN=Cs... [more]
A0A5A7SHN52.88e-1683.33Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1... [more]
A0A6J1FFV02.88e-1683.33Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3BHH72.88e-1683.33Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1IE262.88e-1683.33Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT5G55070.16.4e-1165.31Dihydrolipoamide succinyltransferase [more]
AT4G26910.27.0e-1061.22Dihydrolipoamide succinyltransferase [more]
AT4G26910.17.0e-1061.22Dihydrolipoamide succinyltransferase [more]
AT4G26910.34.3e-0767.57Dihydrolipoamide succinyltransferase [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000089Biotin/lipoyl attachmentPFAMPF00364Biotin_lipoylcoord: 11..52
e-value: 2.4E-6
score: 27.3
NoneNo IPR availableGENE3D2.40.50.100coord: 8..58
e-value: 6.8E-10
score: 40.5
NoneNo IPR availablePANTHERPTHR43416:SF31DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATEDcoord: 5..54
NoneNo IPR availablePANTHERPTHR43416DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATEDcoord: 5..54
NoneNo IPR availableCDDcd06849lipoyl_domaincoord: 10..49
e-value: 1.40838E-9
score: 46.6287
IPR011053Single hybrid motifSUPERFAMILY51230Single hybrid motifcoord: 8..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016636.jh1.t1MELO3C016636.jh1.t1mRNA