MELO3C016636 (gene) Melon (DHL92) v4

Overview


Name	MELO3C016636
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Dihydrolipoyllysine-residue succinyltransferase
Location	chr07: 3793065 .. 3793340 (+)
RNA-Seq Expression	MELO3C016636
Synteny	MELO3C016636

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAGTACATCATTTACTTTTTAACTATATTGATTGTTGCTACATGACATAAGTCTTTTTTGGTTACTTATTAAAAATCATTCTAATATGTCGAGGTCAGATCCAGGTGATAGAGTAGAATTGGATGAAGCGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

mRNA sequence

ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAATCCAGGTGATAGAGTAGAATTGGATGAAGCGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

Coding sequence (CDS)

ATGTTTGGTATCAAAGGGGACCTGCTTGATGTTGTTGTTCCTCCACTGATTGAGTCTATTACTGATGGAACGCTGGTAAAATCCTTGAAGAATCCAGGTGATAGAGTAGAATTGGATGAAGCGTTTGCTCAAATTGAAACGGACAAGATGTTAATTTATATATATATAGTTGAAAATTGA

Protein sequence

MFGIKGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYIYIVEN

Homology

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BLAST of MELO3C016636 vs. NCBI nr
Match: KAG6607794.1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 4   IKGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           I GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 152 ICGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 200

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BLAST of MELO3C016636 vs. NCBI nr
Match: KAG6585877.1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 4   IKGDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           I GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 152 ICGDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 200

[Close]

BLAST of MELO3C016636 vs. NCBI nr
Match: XP_038897720.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X1 [Benincasa hispida])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 96  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

[Close]

BLAST of MELO3C016636 vs. NCBI nr
Match: XP_023524769.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 97  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 143

[Close]

BLAST of MELO3C016636 vs. NCBI nr
Match: XP_022981464.1 (dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial [Cucurbita maxima])

HSP 1 Score: 82.4 bits (202), Expect = 1.4e-12
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 97  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 143

[Close]

BLAST of MELO3C016636 vs. ExPASy Swiss-Prot
Match: Q9FLQ4 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g55070 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-10
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
           GD+++ VVP + ESITDGTL   LK PGDRVE DEA AQIETDK+ I I
Sbjct: 91  GDVVEAVVPHMGESITDGTLAAFLKKPGDRVEADEAIAQIETDKVTIDI 139

[Close]

BLAST of MELO3C016636 vs. ExPASy Swiss-Prot
Match: Q8H107 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At4g26910 PE=1 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-09
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DEA AQIETDK+ I I
Sbjct: 90  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 138

[Close]

BLAST of MELO3C016636 vs. ExPASy Swiss-Prot
Match: Q2FH26 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain USA300) OX=367830 GN=odhB PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-05
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 10 DVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
          +V VP L ESIT+GT+ + LKN GD VE  EA  ++ETDK+ + +
Sbjct: 3  EVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEV 47

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BLAST of MELO3C016636 vs. ExPASy Swiss-Prot
Match: Q2FYM2 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=odhB PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-05
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 10 DVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
          +V VP L ESIT+GT+ + LKN GD VE  EA  ++ETDK+ + +
Sbjct: 3  EVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEV 47

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BLAST of MELO3C016636 vs. ExPASy Swiss-Prot
Match: Q2YY06 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) OX=273036 GN=odhB PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.9e-05
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 10 DVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
          +V VP L ESIT+GT+ + LKN GD VE  EA  ++ETDK+ + +
Sbjct: 3  EVKVPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEV 47

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BLAST of MELO3C016636 vs. ExPASy TrEMBL
Match: A0A6J1FQK0 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111446045 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 97  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 143

[Close]

BLAST of MELO3C016636 vs. ExPASy TrEMBL
Match: A0A6J1IE26 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111476401 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 96  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

[Close]

BLAST of MELO3C016636 vs. ExPASy TrEMBL
Match: A0A6J1J1X8 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111480576 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 97  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 143

[Close]

BLAST of MELO3C016636 vs. ExPASy TrEMBL
Match: A0A5A7SHN5 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00450 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 95  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 141

[Close]

BLAST of MELO3C016636 vs. ExPASy TrEMBL
Match: A0A5D3DHP6 (Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00850 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-13
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLI 53
           GDLLDVVVPPL ESITDGTL K LKNPGDRVELDEA AQIETDK+ I
Sbjct: 96  GDLLDVVVPPLAESITDGTLAKFLKNPGDRVELDEAIAQIETDKVTI 142

[Close]

BLAST of MELO3C016636 vs. TAIR 10
Match: AT5G55070.1 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 65.5 bits (158), Expect = 1.7e-11
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
           GD+++ VVP + ESITDGTL   LK PGDRVE DEA AQIETDK+ I I
Sbjct: 91  GDVVEAVVPHMGESITDGTLAAFLKKPGDRVEADEAIAQIETDKVTIDI 139

[Close]

BLAST of MELO3C016636 vs. TAIR 10
Match: AT4G26910.2 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DEA AQIETDK+ I I
Sbjct: 89  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 137

[Close]

BLAST of MELO3C016636 vs. TAIR 10
Match: AT4G26910.1 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 6   GDLLDVVVPPLIESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
           GD ++ VVP + ESITDGTL   LK PG+RV+ DEA AQIETDK+ I I
Sbjct: 90  GDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 138

[Close]

BLAST of MELO3C016636 vs. TAIR 10
Match: AT4G26910.3 (Dihydrolipoamide succinyltransferase )

HSP 1 Score: 52.8 bits (125), Expect = 1.1e-07
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 0


Query: 18 ESITDGTLVKSLKNPGDRVELDEAFAQIETDKMLIYI 55
          ESITDGTL   LK PG+RV+ DEA AQIETDK+ I I
Sbjct: 3  ESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDI 39

The following BLAST results are available for this feature:

BLAST of MELO3C016636 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607794.1	8.3e-13	85.71	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
KAG6585877.1	8.3e-13	85.71	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
XP_038897720.1	1.4e-12	87.23	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
XP_023524769.1	1.4e-12	87.23	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
XP_022981464.1	1.4e-12	87.23	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]

BLAST of MELO3C016636 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLQ4	2.4e-10	67.35	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
Q8H107	2.6e-09	63.27	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
Q2FH26	3.9e-05	51.11	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
Q2FYM2	3.9e-05	51.11	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]
Q2YY06	3.9e-05	51.11	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehy...	[more]

BLAST of MELO3C016636 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQK0	6.9e-13	87.23	Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IE26	6.9e-13	87.23	Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J1X8	6.9e-13	87.23	Dihydrolipoyllysine-residue succinyltransferase OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7SHN5	6.9e-13	87.23	Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DHP6	6.9e-13	87.23	Dihydrolipoyllysine-residue succinyltransferase OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of MELO3C016636 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55070.1	1.7e-11	67.35	Dihydrolipoamide succinyltransferase	[more]
AT4G26910.2	1.8e-10	63.27	Dihydrolipoamide succinyltransferase	[more]
AT4G26910.1	1.8e-10	63.27	Dihydrolipoamide succinyltransferase	[more]
AT4G26910.3	1.1e-07	70.27	Dihydrolipoamide succinyltransferase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000089	Biotin/lipoyl attachment	PFAM	PF00364	Biotin_lipoyl	coord: 11..52 e-value: 1.7E-6 score: 27.7
None	No IPR available	GENE3D	2.40.50.100		coord: 8..58 e-value: 6.4E-10 score: 40.6
None	No IPR available	PANTHER	PTHR43416	DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL-RELATED	coord: 5..54
None	No IPR available	PANTHER	PTHR43416:SF31	DIHYDROLIPOYLLYSINE-RESIDUE SUCCINYLTRANSFERASE COMPONENT OF 2-OXOGLUTARATE DEHYDROGENASE COMPLEX 1, MITOCHONDRIAL-RELATED	coord: 5..54
None	No IPR available	CDD	cd06849	lipoyl_domain	coord: 10..49 e-value: 1.62318E-9 score: 46.2435
IPR011053	Single hybrid motif	SUPERFAMILY	51230	Single hybrid motif	coord: 8..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016636.1	MELO3C016636.1	mRNA