Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACGAGCAATACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGACAACCAACTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAGACATTTTGTTTCATATTTAATTATTTTTCAATCAAAAGCACTTACTACAA
mRNA sequence
TAACGAGCAATACATAGAGAACATTCACTATATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGACAACCAACTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGATTTTTTTTTCTTTGAATGAAAATTGTTAAATTATTGTATTAGACATTTTGTTTCATATTTAATTATTTTTCAATCAAAAGCACTTACTACAA
Coding sequence (CDS)
ATGTACGATGTCCCTATTGTACATGCTCCAATTCAGAGGAGACGTTCTCTAGTGCAAGAGTCCGATCAATTGGAAGAAGTTGACCAACACGTGGAAGAAGTGCCTCCCGTGACACAGACACAAAGCGAGCATGGTTACGTTAGTCCAGTAATGATGATGCGAGCATTTGAAACAACATATTATGATTCAGGAGTCGGTCAATCGTCAGACTTTGGAACAGGATATTATAATTCAAAGGCAGGTTCGTCATCATCAAACTTTAGACAACAATACTGTGATTTAGGGAGCGATTCATCGTCTTCATACATGCATTGTCACGGGCGTGGTCGTGGAGAACATAATGAATATTTGTACTACGAAGTGCCTGCAGCGATACTCGAGCAATCAGATGAGCAACAACAACAAGAGAATCAGGAGGAAATACAGCAACAAAGAGTTCAGAGTCGACAACCAACTAGAAATCGTCGACGTCCAGGTTGTGGAACACATTGA
Protein sequence
MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYEVPAAILEQSDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH
Homology
BLAST of MELO3C015179.jh1 vs. NCBI nr
Match:
KAA0051227.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 302 bits (774), Expect = 2.47e-101
Identity = 157/163 (96.32%), Postives = 160/163 (98.16%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDVPIVHAPIQRRRSLVQESDQLEEVDQH EEVPPVTQTQS+HGYVSPVMMM+AFETTY
Sbjct: 120 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHGEEVPPVTQTQSKHGYVSPVMMMQAFETTY 179
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YDSGVGQSSDFGTGYYNS+AG SSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE
Sbjct: 180 YDSGVGQSSDFGTGYYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 239
Query: 121 VPAAILEQSDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 163
VPAAILEQ DEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH
Sbjct: 240 VPAAILEQLDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 282
BLAST of MELO3C015179.jh1 vs. NCBI nr
Match:
TYK18882.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 265 bits (677), Expect = 1.54e-88
Identity = 143/163 (87.73%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDV IVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETT
Sbjct: 1 MYDVSIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETT- 60
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YYNS+AG SSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE
Sbjct: 61 --------------YYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
Query: 121 VPAAILEQSDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 163
VPAAILEQ DEQQQQENQEEIQ+QRVQSRQPTRNRRRPGCGTH
Sbjct: 121 VPAAILEQLDEQQQQENQEEIQKQRVQSRQPTRNRRRPGCGTH 148
BLAST of MELO3C015179.jh1 vs. NCBI nr
Match:
KAA0051233.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 246 bits (627), Expect = 2.24e-78
Identity = 141/182 (77.47%), Postives = 147/182 (80.77%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQ--SEHGYVSPVMMMRAFET 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH EEVPP+TQTQ SEH YVSPVMMM F T
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLY 120
TYYDSGVGQSSDFG GYYNS+AG SS++F QQY DLGSD SSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266
Query: 121 YEVPAAIL---------------EQSDEQQQQENQEEIQQQRVQSR--QPTRNRRRPGCG 163
YEVPAA+ EQSDEQQQQENQEEIQQQRVQSR QP RNRRRPGCG
Sbjct: 267 YEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCG 326
BLAST of MELO3C015179.jh1 vs. NCBI nr
Match:
TYK18891.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 246 bits (627), Expect = 2.24e-78
Identity = 141/182 (77.47%), Postives = 147/182 (80.77%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQ--SEHGYVSPVMMMRAFET 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH EEVPP+TQTQ SEH YVSPVMMM F T
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLY 120
TYYDSGVGQSSDFG GYYNS+AG SS++F QQY DLGSD SSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 266
Query: 121 YEVPAAILEQS---------------DEQQQQENQEEIQQQRVQSR--QPTRNRRRPGCG 163
YEVPAA+ EQS DEQQQQENQEEIQQQRVQSR QP RNRRRPGCG
Sbjct: 267 YEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCG 326
BLAST of MELO3C015179.jh1 vs. NCBI nr
Match:
KAA0036767.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 247 bits (631), Expect = 9.72e-77
Identity = 139/180 (77.22%), Postives = 146/180 (81.11%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH +EVPP+TQTQSEH YVSPVMMM F TTY
Sbjct: 335 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTY 394
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YDSGVGQSSDFG GYYNSKAG SS++F QQY DLGSD SSSYMH HGRGRG+HNEYLYYE
Sbjct: 395 YDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYE 454
Query: 121 VPAAILEQSDE---------------QQQQENQEEIQQQRVQSR--QPTRNRRRPGCGTH 163
VPAA+ EQSDE QQQQEN EEIQQQRVQSR QP RNRRRPGCGTH
Sbjct: 455 VPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRRPGCGTH 514
BLAST of MELO3C015179.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U9Y2 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00310 PE=4 SV=1)
HSP 1 Score: 302 bits (774), Expect = 1.20e-101
Identity = 157/163 (96.32%), Postives = 160/163 (98.16%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDVPIVHAPIQRRRSLVQESDQLEEVDQH EEVPPVTQTQS+HGYVSPVMMM+AFETTY
Sbjct: 120 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHGEEVPPVTQTQSKHGYVSPVMMMQAFETTY 179
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YDSGVGQSSDFGTGYYNS+AG SSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE
Sbjct: 180 YDSGVGQSSDFGTGYYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 239
Query: 121 VPAAILEQSDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 163
VPAAILEQ DEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH
Sbjct: 240 VPAAILEQLDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 282
BLAST of MELO3C015179.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3D5S4 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00880 PE=4 SV=1)
HSP 1 Score: 265 bits (677), Expect = 7.44e-89
Identity = 143/163 (87.73%), Postives = 145/163 (88.96%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDV IVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETT
Sbjct: 1 MYDVSIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETT- 60
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YYNS+AG SSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE
Sbjct: 61 --------------YYNSEAGPSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
Query: 121 VPAAILEQSDEQQQQENQEEIQQQRVQSRQPTRNRRRPGCGTH 163
VPAAILEQ DEQQQQENQEEIQ+QRVQSRQPTRNRRRPGCGTH
Sbjct: 121 VPAAILEQLDEQQQQENQEEIQKQRVQSRQPTRNRRRPGCGTH 148
BLAST of MELO3C015179.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7U5S8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00410 PE=4 SV=1)
HSP 1 Score: 246 bits (627), Expect = 1.08e-78
Identity = 141/182 (77.47%), Postives = 147/182 (80.77%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQ--SEHGYVSPVMMMRAFET 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH EEVPP+TQTQ SEH YVSPVMMM F T
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLY 120
TYYDSGVGQSSDFG GYYNS+AG SS++F QQY DLGSD SSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHDHGRGRGEHNEYLY 266
Query: 121 YEVPAAIL---------------EQSDEQQQQENQEEIQQQRVQSR--QPTRNRRRPGCG 163
YEVPAA+ EQSDEQQQQENQEEIQQQRVQSR QP RNRRRPGCG
Sbjct: 267 YEVPAAVPKQSDEQQQQENAVVPEQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCG 326
BLAST of MELO3C015179.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3D5R5 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001010 PE=4 SV=1)
HSP 1 Score: 246 bits (627), Expect = 1.08e-78
Identity = 141/182 (77.47%), Postives = 147/182 (80.77%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQ--SEHGYVSPVMMMRAFET 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH EEVPP+TQTQ SEH YVSPVMMM F T
Sbjct: 147 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGEEVPPMTQTQTQSEHNYVSPVMMMPTFGT 206
Query: 61 TYYDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLY 120
TYYDSGVGQSSDFG GYYNS+AG SS++F QQY DLGSD SSSYMH HGRGRGEHNEYLY
Sbjct: 207 TYYDSGVGQSSDFGRGYYNSEAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGEHNEYLY 266
Query: 121 YEVPAAILEQS---------------DEQQQQENQEEIQQQRVQSR--QPTRNRRRPGCG 163
YEVPAA+ EQS DEQQQQENQEEIQQQRVQSR QP RNRRRPGCG
Sbjct: 267 YEVPAAVPEQSNELQQQENAAVPGQSDEQQQQENQEEIQQQRVQSRRRQPARNRRRPGCG 326
BLAST of MELO3C015179.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7T598 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00500 PE=4 SV=1)
HSP 1 Score: 247 bits (631), Expect = 4.70e-77
Identity = 139/180 (77.22%), Postives = 146/180 (81.11%), Query Frame = 0
Query: 1 MYDVPIVHAPIQRRRSLVQESDQLEEVDQHVEEVPPVTQTQSEHGYVSPVMMMRAFETTY 60
MYDVPIV AP+QRRR LVQE DQLEEVDQH +EVPP+TQTQSEH YVSPVMMM F TTY
Sbjct: 335 MYDVPIVPAPVQRRRPLVQEPDQLEEVDQHGKEVPPMTQTQSEHNYVSPVMMMPTFGTTY 394
Query: 61 YDSGVGQSSDFGTGYYNSKAGSSSSNFRQQYCDLGSDSSSSYMHCHGRGRGEHNEYLYYE 120
YDSGVGQSSDFG GYYNSKAG SS++F QQY DLGSD SSSYMH HGRGRG+HNEYLYYE
Sbjct: 395 YDSGVGQSSDFGRGYYNSKAGQSSTDFGQQYYDLGSDPSSSYMHGHGRGRGKHNEYLYYE 454
Query: 121 VPAAILEQSDE---------------QQQQENQEEIQQQRVQSR--QPTRNRRRPGCGTH 163
VPAA+ EQSDE QQQQEN EEIQQQRVQSR QP RNRRRPGCGTH
Sbjct: 455 VPAAVPEQSDELQQQENAAVPGQSDEQQQQENHEEIQQQRVQSRRRQPARNRRRPGCGTH 514
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0051227.1 | 2.47e-101 | 96.32 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK18882.1 | 1.54e-88 | 87.73 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0051233.1 | 2.24e-78 | 77.47 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK18891.1 | 2.24e-78 | 77.47 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| KAA0036767.1 | 9.72e-77 | 77.22 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U9Y2 | 1.20e-101 | 96.32 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3D5S4 | 7.44e-89 | 87.73 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7U5S8 | 1.08e-78 | 77.47 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3D5R5 | 1.08e-78 | 77.47 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5A7T598 | 4.70e-77 | 77.22 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
