MELO3C015179 (gene) Melon (DHL92) v4

Overview
NameMELO3C015179
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr06: 11040136 .. 11040754 (-)
RNA-Seq ExpressionMELO3C015179
SyntenyMELO3C015179
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACATTCTACTTTATATTTAATTATTATTCAATCACAAGCAATTACTAAAA

mRNA sequence

TAACGAGCAGTACATCGATAGCATACACTATATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGATATTACAATTTAGAGGCAAGTCCATCATCATCAAACTTTGGACAAGAATACTATGATTTAGGGACCAATCCATCATCTTCATACATGCATGGTCATGGATGCAGTCGTGGAGAACATAACGAATATTTATACTACGAAGCGCCCGCAGTGGTACCCGATGAACCAAATGAGCAACAACAACAAGAGAATCAGAAGGAACTACAACAACAAAGAGTGCAGAGTCGACGACGACAACCAACTAGAAATCGTCGACGTCCAAGTTGTGGAACACATTGATTTTTTTCATTAAATGAAAATTGTTAAATTATCGTATTAGACATTCTACTTTATATTTAATTATTATTCAATCACAAGCAATTACTAAAA

Coding sequence (CDS)

ATGTATGATGTACCTATTGTACCTGCTCCAGTTCAAAGGAGACGTACTCTAGTGCAAAAGCTTGATGAATTGGAAGAAGTTGACCAAAACGTGGAAGAAGTGCCTCCTATCACACAAACACAGAGCGAGACTGGTTACGTTAGTCCAATGATGATGATGTCGGCGTTTGGAACGAGATATTATTATCCAGGAGTTGGTCAATCGTCAGGCTTCGGAACATGA

Protein sequence

MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRYYYPGVGQSSGFGT
Homology
[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: TYK25955.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
          MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY
Sbjct: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60

Query: 61 YYPGVGQSSGFGT 74
          YYPGVGQSSGFGT
Sbjct: 61 YYPGVGQSSGFGT 73

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: KAA0051098.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK02687.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAP+QRRR LVQ+LDELEEVDQ++EEVPP+TQT+SET YVSPM+MMSAFGT Y
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YYPGVGQSSGFGT 74
           Y PGV QSS FGT
Sbjct: 337 YDPGVSQSSDFGT 349

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: KAA0047087.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAPVQRR  LVQ+LD+LEEVDQ+VEEVPP+TQTQS+ GYVSP+MMM  FG  Y
Sbjct: 282 MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 341

Query: 61  YYPGVGQSSGFGT 74
           Y  GV QSS FGT
Sbjct: 342 YDSGVSQSSDFGT 354

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: KAA0047564.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa] >TYK14961.1 GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
          MYDVPIV APVQRR  LVQ+LDELEEVDQ+VEEVP +TQTQSETGYVSP+MMMS FG  Y
Sbjct: 1  MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61 YYPGVGQSSGFGT 74
          Y P VGQS  FGT
Sbjct: 61 YDPEVGQSLDFGT 73

[Close]
BLAST of MELO3C015179 vs. NCBI nr
Match: TYK05068.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 3.5e-21
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAPVQRR  LVQ+LD+LEEVDQ+VEEVPP+TQTQS+ GYVSP+MMM  FG  Y
Sbjct: 99  MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 158

Query: 61  YYPGVGQSSGFGT 74
           Y  GV QSS FGT
Sbjct: 159 YDSGVSQSSDFGT 171

[Close]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match: A0A5D3DR34 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1441G00150 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.3e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
          MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY
Sbjct: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60

Query: 61 YYPGVGQSSGFGT 74
          YYPGVGQSSGFGT
Sbjct: 61 YYPGVGQSSGFGT 73

[Close]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match: A0A5A7U731 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00130 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.3e-24
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAP+QRRR LVQ+LDELEEVDQ++EEVPP+TQT+SET YVSPM+MMSAFGT Y
Sbjct: 277 MYDVPIVPAPIQRRRALVQELDELEEVDQHMEEVPPVTQTKSETSYVSPMIMMSAFGTGY 336

Query: 61  YYPGVGQSSGFGT 74
           Y PGV QSS FGT
Sbjct: 337 YDPGVSQSSDFGT 349

[Close]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match: A0A5A7TX85 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2754G00110 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 58/73 (79.45%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1  MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
          MYDVPIV APVQRR  LVQ+LDELEEVDQ+VEEVP +TQTQSETGYVSP+MMMS FG  Y
Sbjct: 1  MYDVPIVSAPVQRRHALVQELDELEEVDQHVEEVPLVTQTQSETGYVSPVMMMSTFGMGY 60

Query: 61 YYPGVGQSSGFGT 74
          Y P VGQS  FGT
Sbjct: 61 YDPEVGQSLDFGT 73

[Close]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match: A0A5D3C1B6 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00380 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAPVQRR  LVQ+LD+LEEVDQ+VEEVPP+TQTQS+ GYVSP+MMM  FG  Y
Sbjct: 99  MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 158

Query: 61  YYPGVGQSSGFGT 74
           Y  GV QSS FGT
Sbjct: 159 YDSGVSQSSDFGT 171

[Close]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match: A0A5A7TYT2 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00520 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.7e-21
Identity = 56/73 (76.71%), Postives = 62/73 (84.93%), Query Frame = 0 

Query: 1   MYDVPIVPAPVQRRRTLVQKLDELEEVDQNVEEVPPITQTQSETGYVSPMMMMSAFGTRY 60
           MYDVPIVPAPVQRR  LVQ+LD+LEEVDQ+VEEVPP+TQTQS+ GYVSP+MMM  FG  Y
Sbjct: 282 MYDVPIVPAPVQRRHALVQELDQLEEVDQHVEEVPPVTQTQSKYGYVSPVMMMPTFGMTY 341

Query: 61  YYPGVGQSSGFGT 74
           Y  GV QSS FGT
Sbjct: 342 YDSGVSQSSDFGT 354

The following BLAST results are available for this feature:
BLAST of MELO3C015179 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK25955.11.3e-31100.00GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0051098.12.6e-2482.19serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0047087.13.5e-2176.71GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
KAA0047564.13.5e-2179.45GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
TYK05068.13.5e-2176.71GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C015179 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DR346.3e-32100.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7U7311.3e-2482.19Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7TX851.7e-2179.45GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5D3C1B61.7e-2176.71GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
A0A5A7TYT21.7e-2176.71GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C015179 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015179.1MELO3C015179.1mRNA