MELO3C015042 (gene) Melon (DHL92) v4

Overview
NameMELO3C015042
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionIntegrase catalytic domain-containing protein
Locationchr03: 6440800 .. 6441080 (-)
RNA-Seq ExpressionMELO3C015042
SyntenyMELO3C015042
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCAAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTACGGTGATGGCGAACAAGGAAGACGAAGAGGATTTGATTTTTGTGAACAAGGAGGACAAACAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGAAGGTTTGCGAGAGATGGCGACCGCGAACAACGAAGACGAAGAGAAGG

mRNA sequence

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCAAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGAAGGTTTGCGAGAGATGGCGACCGCGAACAACGAAGACGAAGAGAAGG

Coding sequence (CDS)

ATGGGGAAGACGAAATCTTGGAAGGCGACTTCATTGCAAGAGAAGGCTCAGCAGAAACACGACAGAGGATTTGATTTTCGCGAACAAGGAGGACGAAGAGAAGGTTCGTGCGAGAGATTTAGGGTGATGGCGAACAAGGAAGACGAAGAGAAGGTTTGCGAGAGATGGCGACCGCGAACAACGAAGACGAAGAGAAGG

Protein sequence

MGKTKSWKATSLQEKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEEKVCERWRPRTTKTKRR
Homology
[Close]
BLAST of MELO3C015042 vs. NCBI nr
Match: KAA0050651.1 (uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK07783.1 uncharacterized protein E5676_scaffold1737G00660 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 8  KATSLQEKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEEK 52
          KA S++EKAQQKHDR FDF EQGGRREGSCERFRVMANKEDEEK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

[Close]
BLAST of MELO3C015042 vs. ExPASy TrEMBL
Match: A0A5D3C784 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00660 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0 

Query: 8  KATSLQEKAQQKHDRGFDFREQGGRREGSCERFRVMANKEDEEK 52
          KA S++EKAQQKHDR FDF EQGGRREGSCERFRVMANKEDEEK
Sbjct: 3  KAASVREKAQQKHDRRFDFHEQGGRREGSCERFRVMANKEDEEK 46

The following BLAST results are available for this feature:
BLAST of MELO3C015042 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0050651.12.3e-1188.64uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of MELO3C015042 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C015042 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C7841.1e-1188.64Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
BLAST of MELO3C015042 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015042.1MELO3C015042.1mRNA