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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGGTCTTGTGCAACCAAAGAAGGGCAAGAACAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA mRNA sequence ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGGTCTTGTGCAACCAAAGAAGGGCAAGAACAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA Coding sequence (CDS) ATGGCAGAAGAGTTCGACGAAGAAATTGAGAGGATGAGTCTGAAACAAAGGTTGAGGCCTGAAGAACTTAGACTTGTTGGTCTTGTGCAACCAAAGAAGGGCAAGAACAAAGTAGGGGCATCTAGACTTAAGGTTGTCCAAGCGAATGTGTCTTTAAACAACTAA Protein sequence MAEEFDEEIERMSLKQRLRPEELRLVGLVQPKKGKNKVGASRLKVVQANVSLNN
Homology
BLAST of MELO3C014941 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa]) HSP 1 Score: 80.5 bits (197), Expect = 4.9e-12 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0
Query: 1 MAEEFDEEIERMSLKQRLRPEELRLVGLVQPKKGKNKVGASRLKVV 47
MAEEFDEEIERMSLKQRLRPEELRLV LVQPKKGK+KVGASRLKV+
Sbjct: 1 MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVM 46
BLAST of MELO3C014941 vs. NCBI nr
Match: TYK11975.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]) HSP 1 Score: 57.8 bits (138), Expect = 3.4e-05 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query: 1 MAEEFDEEIERMS-LKQRLRPEELRLVGLVQPKKGKNKVGASR 43
+AEEF +EIERMS LK RLRPEEL L+ +VQPKKGKNK GA R
Sbjct: 247 VAEEFSQEIERMSPLKPRLRPEELGLISVVQPKKGKNKTGALR 289
BLAST of MELO3C014941 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12 Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 0
Query: 1 MAEEFDEEIERMSLKQRLRPEELRLVGLVQPKKGKNKVGASRLKVV 47
MAEEFDEEIERMSLKQRLRPEELRLV LVQPKKGK+KVGASRLKV+
Sbjct: 1 MAEEFDEEIERMSLKQRLRPEELRLVDLVQPKKGKSKVGASRLKVM 46
BLAST of MELO3C014941 vs. ExPASy TrEMBL
Match: A0A5D3CKB6 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001600 PE=4 SV=1) HSP 1 Score: 57.8 bits (138), Expect = 1.7e-05 Identity = 32/43 (74.42%), Postives = 36/43 (83.72%), Query Frame = 0
Query: 1 MAEEFDEEIERMS-LKQRLRPEELRLVGLVQPKKGKNKVGASR 43
+AEEF +EIERMS LK RLRPEEL L+ +VQPKKGKNK GA R
Sbjct: 247 VAEEFSQEIERMSPLKPRLRPEELGLISVVQPKKGKNKTGALR 289
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0060350.1 | 4.9e-12 | 93.48 | hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210... | [more] |
| TYK11975.1 | 3.4e-05 | 74.42 | Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DFD3 | 2.4e-12 | 93.48 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3CKB6 | 1.7e-05 | 74.42 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Cucumis melo var. mak... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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