MELO3C014836 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014836
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cell wall protein DAN4-like
Location	chr06: 21929655 .. 21930215 (+)
RNA-Seq Expression	MELO3C014836
Synteny	MELO3C014836

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGATCCCTTCTTTCCATCTTCTTTTTCTTTAATACAATCTCTTACATTAATTATCACAATGGCGTATCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGCTGTTGCTCAGGCTCCTTCTACCTCCCCCACCTCCACTCCAGCTACCATGACCTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCATCCCTACCACCACCATCACCTCAGCCGATGCTTCATCAATCTCAGTAGCTCCAGCATTCTCACCCGATTCCTCTGCTCAATCACCAACGACTGCAACATCTCCCACCGGTTCTCCTTCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTTTTGGCTGATGGATTCATGGAGAGGAGATTCAAATCTCAACTTTTGGTAGAGACTAATATTATTTTTATCCTTTGAGCTATGCTCCTCGAGGCAATATTGTCATCGAGTCATAATTTTAATTTTCTCTTTTATTAAGTTTCATTCCATTGTAATCAATTTTCCTTTCAATATAATCAAATACATAAAATATACATAAATTT

mRNA sequence

ATCGATCCCTTCTTTCCATCTTCTTTTTCTTTAATACAATCTCTTACATTAATTATCACAATGGCGTATCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGCTGTTGCTCAGGCTCCTTCTACCTCCCCCACCTCCACTCCAGCTACCATGACCTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCATCCCTACCACCACCATCACCTCAGCCGATGCTTCATCAATCTCAGTAGCTCCAGCATTCTCACCCGATTCCTCTGCTCAATCACCAACGACTGCAACATCTCCCACCGGTTCTCCTTCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTTTTGGCTGATGGATTCATGGAGAGGAGATTCAAATCTCAACTTTTGGTAGAGACTAATATTATTTTTATCCTTTGAGCTATGCTCCTCGAGGCAATATTGTCATCGAGTCATAATTTTAATTTTCTCTTTTATTAAGTTTCATTCCATTGTAATCAATTTTCCTTTCAATATAATCAAATACATAAAATATACATAAATTT

Coding sequence (CDS)

ATGGCGTATCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGCTGTTGCTCAGGCTCCTTCTACCTCCCCCACCTCCACTCCAGCTACCATGACCTCCTCTGCCTCGTCTTCATCTTCACTCGATTCAACTACCATCCCTACCACCACCATCACCTCAGCCGATGCTTCATCAATCTCAGTAGCTCCAGCATTCTCACCCGATTCCTCTGCTCAATCACCAACGACTGCAACATCTCCCACCGGTTCTCCTTCTGCTGAGACTTCTCGCTTGTTTACAAATGGTTTTTTTGGCTGA

Protein sequence

MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMTSSASSSSSLDSTTIPTTTITSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG

Homology

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BLAST of MELO3C014836 vs. NCBI nr
Match: KAA0056279.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 5.4e-36
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMTSSASSSSSLDSTTIPTTTITSADA 60
           MAYQSLAFLALIIVAVTGAVAQAP+TSPTSTPATMTSSASSSSSLDSTTIPTTTI+SADA
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSSASSSSSLDSTTIPTTTISSADA 60

Query: 61  SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
           SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG
Sbjct: 61  SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 102

[Close]

BLAST of MELO3C014836 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 2.2e-29
Identity = 91/106 (85.85%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMT----SSASSSSSLDSTTIPTTTIT 60
           MAYQSLA LALI+VAVTGAVAQAPSTSPTS+P TMT    SS SSSSSLDSTT  TTT +
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTTTTTTS 60

Query: 61  SADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
           SADASSISVAPAFSPDSSAQSPTTATSPTGSPS ETSR FTNGFFG
Sbjct: 61  SADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of MELO3C014836 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 131.3 bits (329), Expect = 4.6e-27
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMT----SSASSSSSLDSTTIPTTTIT 60
           MAYQSLAFL LIIVA+TG VAQAPSTSPTSTPATMT    SS SSSSSLDSTT PTTT T
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTTTPTTTTT 60

Query: 61  SA-DASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGF 101
           S+ D SSIS+APAFSPDSSAQSPTTATSPTGS SAETSRLF+NGF
Sbjct: 61  SSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of MELO3C014836 vs. NCBI nr
Match: KGN58213.1 (hypothetical protein Csa_017497 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTS---PT--STPATMTSSASSSSSLDSTTIPTTTI 60
           MAYQSLAFLALIIVA+TGAVAQ P++S   PT  STPA MTSS+SSSSSLDSTT  TTT 
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSSSSSSSLDSTTTTTTTS 60

Query: 61  --TSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
             +S D+ SIS AP  SPDSSAQSPTTATSP+GSPS ETSRLF+NGFFG
Sbjct: 61  SGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of MELO3C014836 vs. NCBI nr
Match: XP_031737565.1 (putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_017464 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 83/118 (70.34%), Postives = 87/118 (73.73%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTS---PT--STPATMTSS-----ASSSSSLDSTTI 60
           MAYQSLAFLALIIVAVTG VAQ P++S   PT  STPA  TSS      SSSSSLDSTT 
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  PTTTIT------SADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
            TTT T      SAD+ SISVAP  +PDS AQSPTTA SPTGS SAETSR FTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 117

[Close]

BLAST of MELO3C014836 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.6e-36
Identity = 100/102 (98.04%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMTSSASSSSSLDSTTIPTTTITSADA 60
           MAYQSLAFLALIIVAVTGAVAQAP+TSPTSTPATMTSSASSSSSLDSTTIPTTTI+SADA
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATMTSSASSSSSLDSTTIPTTTISSADA 60

Query: 61  SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
           SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG
Sbjct: 61  SSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 102

[Close]

BLAST of MELO3C014836 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.1e-29
Identity = 91/106 (85.85%), Postives = 94/106 (88.68%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMT----SSASSSSSLDSTTIPTTTIT 60
           MAYQSLA LALI+VAVTGAVAQAPSTSPTS+P TMT    SS SSSSSLDSTT  TTT +
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSSTSSSSSLDSTTTTTTTTS 60

Query: 61  SADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
           SADASSISVAPAFSPDSSAQSPTTATSPTGSPS ETSR FTNGFFG
Sbjct: 61  SADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of MELO3C014836 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.2e-27
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATMT----SSASSSSSLDSTTIPTTTIT 60
           MAYQSLAFL LIIVA+TG VAQAPSTSPTSTPATMT    SS SSSSSLDSTT PTTT T
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSSTSSSSSLDSTTTPTTTTT 60

Query: 61  SA-DASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGF 101
           S+ D SSIS+APAFSPDSSAQSPTTATSPTGS SAETSRLF+NGF
Sbjct: 61  SSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of MELO3C014836 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.7e-23
Identity = 83/109 (76.15%), Postives = 91/109 (83.49%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTS---PT--STPATMTSSASSSSSLDSTTIPTTTI 60
           MAYQSLAFLALIIVA+TGAVAQ P++S   PT  STPA MTSS+SSSSSLDSTT  TTT 
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSSSSSSSLDSTTTTTTTS 60

Query: 61  --TSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
             +S D+ SIS AP  SPDSSAQSPTTATSP+GSPS ETSRLF+NGFFG
Sbjct: 61  SGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of MELO3C014836 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.4e-18
Identity = 79/111 (71.17%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGAVAQAPSTSPTSTPATM---TSSASSSSSLDSTTIPTTTIT- 60
           MAYQSLAFLALIIVAVTG VAQ P TS T  P T    +S+ SSSSSLDSTT  TTT T 
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTTTS 60

Query: 61  -----SADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 103
                SAD+ SISVAP  +PDS AQSPTTA SPTGS SAETSR FTNGFFG
Sbjct: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 109

The following BLAST results are available for this feature:

BLAST of MELO3C014836 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056279.1	5.4e-36	98.04	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05220.1 cell wall pro...	[more]
KAA0056285.1	2.2e-29	85.85	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
XP_008450206.1	4.6e-27	84.76	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]
KGN58213.1	2.0e-22	76.15	hypothetical protein Csa_017497 [Cucumis sativus]	[more]
XP_031737565.1	1.1e-17	70.34	putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_...	[more]

BLAST of MELO3C014836 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014836 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1I1	2.6e-36	98.04	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3C1H7	1.1e-29	85.85	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPQ2	2.2e-27	84.76	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A0A0L8Q5	9.7e-23	76.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]
A0A0A0LB81	9.4e-18	71.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1	[more]

BLAST of MELO3C014836 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..102
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014836.1	MELO3C014836.1	mRNA