MELO3C014831 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014831
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	NBS-LRR type resistance protein
Location	chr06: 22043216 .. 22043485 (-)
RNA-Seq Expression	MELO3C014831
Synteny	MELO3C014831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

mRNA sequence

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

Coding sequence (CDS)

ATGCGGCGGAGGGCAGCTGGGCGTCGGCAGACACGGCCGGACGAAGGACGCACGGCGGCGTCTGGTTCCGTGAGCTCGAGAGGGAGATCAGAAATGGTGCGGCCGCGACGAATGAACGTTGGAGTTGCGAAACCGTCGACGACGGAGACGGAGACAGAGGTGGAGATAGAGGCAGAGACAGAGACACGTGCGAAAGAGAAAGGATGGCGAGACGGCGGCGACGTCGGCTTCGCGAAGCTGAAGACGAAGAAGGAGAAAGAGAACCGATGA

Protein sequence

MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETETEVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR

Homology

[Close]

BLAST of MELO3C014831 vs. NCBI nr
Match: ADN34159.1 (NBS-LRR type resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1   MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETET-------- 60
           MRRRAAGRRQTR DEGRT ASG +  RGRSEMVRPRR +VGVAKP+TTET+T        
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  -EVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
            + +   + +   +E+ WRDGG V   K KTK+++  R
Sbjct: 283 GDGDRGGDGDACERER-WRDGG-VKMKKEKTKRKRRVR 318

[Close]

BLAST of MELO3C014831 vs. NCBI nr
Match: TYJ98074.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETE-----TEVE 60
          M R+ AG RQTR DEGRT  S  V  RGRSEMVRPR++N GV +P+TTETE      + +
Sbjct: 1  MLRKTAGHRQTRSDEGRTTMSSCVRPRGRSEMVRPRQLNAGVVEPTTTETEMGDHHRDGD 60

Query: 61 IEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
           + +   R +++     G  GF +    K+KE R
Sbjct: 61 RDGDGRVRERKRTDEKTGGGGFVRDLEMKKKEER 94

[Close]

BLAST of MELO3C014831 vs. ExPASy TrEMBL
Match: E5GCG0 (NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.7e-12
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1   MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETET-------- 60
           MRRRAAGRRQTR DEGRT ASG +  RGRSEMVRPRR +VGVAKP+TTET+T        
Sbjct: 223 MRRRAAGRRQTRSDEGRTTASGGMKPRGRSEMVRPRRKDVGVAKPTTTETKTGDHHRDGD 282

Query: 61  -EVEIEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
            + +   + +   +E+ WRDGG V   K KTK+++  R
Sbjct: 283 GDGDRGGDGDACERER-WRDGG-VKMKKEKTKRKRRVR 318

[Close]

BLAST of MELO3C014831 vs. ExPASy TrEMBL
Match: A0A5D3BG73 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00050 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.5e-07
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 1  MRRRAAGRRQTRPDEGRTAASGSVSSRGRSEMVRPRRMNVGVAKPSTTETE-----TEVE 60
          M R+ AG RQTR DEGRT  S  V  RGRSEMVRPR++N GV +P+TTETE      + +
Sbjct: 1  MLRKTAGHRQTRSDEGRTTMSSCVRPRGRSEMVRPRQLNAGVVEPTTTETEMGDHHRDGD 60

Query: 61 IEAETETRAKEKGWRDGGDVGFAKLKTKKEKENR 90
           + +   R +++     G  GF +    K+KE R
Sbjct: 61 RDGDGRVRERKRTDEKTGGGGFVRDLEMKKKEER 94

The following BLAST results are available for this feature:

BLAST of MELO3C014831 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34159.1	1.4e-11	55.10	NBS-LRR type resistance protein [Cucumis melo subsp. melo]	[more]
TYJ98074.1	1.8e-06	44.68	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C014831 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GCG0	6.7e-12	55.10	NBS-LRR type resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3BG73	8.5e-07	44.68	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO3C014831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014831.1	MELO3C014831.1	mRNA