MELO3C014729 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014729
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 21
Location	chr05: 119567 .. 122304 (+)
RNA-Seq Expression	MELO3C014729
Synteny	MELO3C014729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGCAAGGTCAACTTGCATAAATTTTGTTTAGTGGAACAATCATTGGAATAGAAAATGTGAAACACCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTGAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTTCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAGCGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGGTGCGAATCGTTTATTCTTTACCTTAATACTTCGGGGTGGAAAATATGAATGTGTGATGCATGTTGATGTACCTCTTGTTAATAACTTTTTCACGCATTGAAACCTCAAGAAACATATTTGCATTTTCCATTTGGGGAAATTCAGTATCCTAGATTAACCTTACATGCATTCTCTCTACTGGGTAAGTAGCCGAGAATGCAGTATCTACTTGAATCACCCTTGTGCTGAGGTTGGAAGAGAGAAAAAAAATCAAGGCAGCAGATTTCCTGCTACTTGTTTGAGATGAGTACATATTCTAATGCTATGATATATGATACAATCCACAAATTTGGTATCAAAAACTTCAGTCTATTTTTGCCATCCAACATCAAATACTACTTAGGTAGGTATGGCTACTCGGTCGGCAATAAAACAAACTACTATGGTTCTTTTTCTTAGTTATCCTTTTCTTTTTAATTGCTTGTTATGTACATTTGGGCCCACTTTAAGGTGTTCTTTAAGTGTTGATATTTTGGAATCTGATACCCAAACCCTGTATTTGAGCAATTTTGCTGAGCGAGTTTTGATTTTCACAAGTTTTCATCGTCGAACTTAGCAATGCATTAAGGTTTGTTCTTTTCAATAATTAGCAATGCATTAAGGTTTGTTCTTTCCAATAATCTTTCAAGGATTATATAGAGTTTATAAAATGCACTGATTCTGTCCACGTTAAGTTTGAAAATCCCAGTGCGATAGTATTAAGTAATAGGAACATACAAATTTTTCCAATTCTGTTGGACTTTTAATGTCTTCTAGATGTGATTCTACAACGAGTTAGATTTGTTCTATACATTCTCTCATTTTCTGTCTTTTTTACGTTTACCTCTTGATTGGTATGTTATTTTATTAGCTTTTTAAGGAGTTGCAAGGAGTCAACTGAGGAATTCTCCTCCCTCCACTTTTTTCTTTGGGAGAAAAGGTTGTTTTCGTAGTAGGTTGAAGTATGTGCTACTTTGTGGGGTTTGGGGTGCGAGAAATGATTGGATCTTCGAGGGAGAAATAATCGAATCTTGGATCTTGAAGATTCATTTTTCAGAATTAATCGCTGAGTCATATTTCACTTGATTGGAGCCCTTCCCCTTCTTATAGTTAGCTACACTTTTTGTGAACACCATTCTGTATGTTCATGTATTATTTCACCTTGTTTTTCAACAAAAGTCTAGTTGTACGTCAATAACAAAATTTATCAGCATTTTGAACGAAAGAAAGGGATGGGATCTTGCTTCATTTATTTGCAATTATTCAATTGAACGTGTGTACTTCTTAAAAGAAATTATTGTCAATATTTTCTAGCACAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGTATGAATTCTCATATTCTGATGTTGATATAAGATCAAGAGTTGTGTTGTTTACTTCTCAGTATGTATTTCAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGGTGTTACCTCCGTCTTCTTGTTAATCTTTATATTTTCAAGCAGCAGTTGACTGATGTTTGGCTGGCGACTTACATCAGTTGAAATAACTCTATTTAATAATTTTAGCCCTAAATGTAAATTTCTCATGTTCACTTCATTCTATTGAACATACGGATATTTTGCCCCATCTACACAACTAACAATCTTTACCGAAACTGTGTTGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACATTGATATTTTCATCGATATTTCTAAGTTTTCAAATGACTTTGATATCATCACGAGGAGCGAATGGATATTTTCATTATATTGTAAACAACTAGGAAAAAAAGGCTAAATTATAAAAAATGTTCCTTTAC

mRNA sequence

GTTTGCAAGGTCAACTTGCATAAATTTTGTTTAGTGGAACAATCATTGGAATAGAAAATGTGAAACACCAATTTTAGAAAAAAGAAATTTTGGAAGCAGCTGAAAGATGACAATAACTATTCAGCATCCACTTGTGACTGATGTTCTAAAACTAAAATATTAGGAAGGTATAAGGAAAAGGACAGAAAAGAAGGAACCCTAATTCATCTGCTTCTTCTCCGTCTCACGTTCAACCGCCCAGCCCCTTCCTTGCCTCTCCGGTAGTATCTCGATGACAGTCCTTTGAGATTAGCGGCGGATCGTACTCTCACTCACTCAGTTTCTGGAAGTGATTTGCTGATTAAACGGAGCAATATGTGTATTATTTGCGGAATCATCTTCTGAATTCTTCCTAGGGATAAGGTTGAAGATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGAAAGAGTGGGGGAACTTTCCTATGCTACCAATGTATGGAAACTTTCCGCCTTCATTTCTGCCACATGACTCTTTGTTTTTATATTACATATATGTAGAAATATACGTGATTCTACAGTTTATGGAAGAAAAATAATTTTGTCCATTGTATTAATTTTTTTACTGACATTGATATTTTCATCGATATTTCTAAGTTTTCAAATGACTTTGATATCATCACGAGGAGCGAATGGATATTTTCATTATATTGTAAACAACTAGGAAAAAAAGGCTAAATTATAAAAAATGTTCCTTTAC

Coding sequence (CDS)

ATGGACATAATTTCCCAATTGCAGGAACAAGTTAACACAATTGCTGCTTTAGCTTTCAACACATTTGGGACATTGCAGAGAGACGCTCCTCCAGTTCGTTTATCCCCTAATTACCCCGAACCACCGTCTCAGGAGCCTACAGAGGATAGTGCAACCATCGCAGAGCAGCCCAAGCTTATGAGTGCCGCTTTGGTGAAAGCTGCCAAGCAGTTTGATGCACTGGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAATTGAAAAGGATTGCAGAACTACAGGCTGAGAACGATGTTGTAGGTCAAGAACTTCAAAAGCAGCTACAAGCAGCAGAGCAAGAATTAGTACAAGTTCAGGAGCTGTTCAGCCAAGTAGCAGATAATTGCTTGAACTTAAAGAAAGCAGATTGA

Protein sequence

MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLMSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQVQELFSQVADNCLNLKKAD

Homology

[Close]

BLAST of MELO3C014729 vs. NCBI nr
Match: XP_008449895.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo] >KAA0040117.1 mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 4.9e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. NCBI nr
Match: TYK21740.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.4e-63
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. NCBI nr
Match: XP_004149640.1 (mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN54019.1 hypothetical protein Csa_021664 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. NCBI nr
Match: XP_038902781.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 247.7 bits (631), Expect = 6.0e-62
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVN+IAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNSIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAEKELIQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. NCBI nr
Match: XP_038893979.1 (mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] >XP_038893980.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida])

HSP 1 Score: 245.4 bits (625), Expect = 3.0e-61
Identity = 132/138 (95.65%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPPS EPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNAIAALAFNTFGTLQRDAPPVRLSPNYPEPPSHEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQLQAAE+EL+QV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLQAAERELIQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. ExPASy Swiss-Prot
Match: C0LU16 (Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana OX=3702 GN=MED21 PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 2.4e-50
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

[Close]

BLAST of MELO3C014729 vs. ExPASy TrEMBL
Match: A0A5A7TEZ9 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00920 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. ExPASy TrEMBL
Match: A0A1S3BN38 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 GN=LOC103491637 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. ExPASy TrEMBL
Match: A0A5D3DEB7 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001120 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.9e-64
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDGATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. ExPASy TrEMBL
Match: A0A0A0KZ00 (Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=3659 GN=Csa_4G268030 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.5e-63
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTED+ATIAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDNATIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAE+ELVQV
Sbjct: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEKELVQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. ExPASy TrEMBL
Match: A0A6J1DHM9 (Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX=3673 GN=LOC111021179 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.1e-60
Identity = 131/138 (94.93%), Postives = 133/138 (96.38%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSATIAEQPKLM 60
           MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPPSQEPTEDSA IAEQPKLM
Sbjct: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSSNYPEPPSQEPTEDSANIAEQPKLM 60

Query: 61  SAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQV 120
           SAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND VGQELQKQL+AAE+EL QV
Sbjct: 61  SAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQLEAAEKELKQV 120

Query: 121 QELFSQVADNCLNLKKAD 139
           QELFSQVADNCLNLKKAD
Sbjct: 121 QELFSQVADNCLNLKKAD 138

[Close]

BLAST of MELO3C014729 vs. TAIR 10
Match: AT4G04780.1 (mediator 21 )

HSP 1 Score: 199.5 bits (506), Expect = 1.7e-51
Identity = 109/139 (78.42%), Postives = 119/139 (85.61%), Query Frame = 0


Query: 1   MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPSQEPTEDSAT-IAEQPKL 60
           MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP+     D AT   EQPK 
Sbjct: 1   MDIISQLQEQVNTIAAITFNAFGTLQRDAPPVQLSPNYPEPPATTTVTDDATPFPEQPKQ 60

Query: 61  MSAALVKAAKQFDALVAALPLSDGGEEEQLKRIAELQAENDVVGQELQKQLQAAEQELVQ 120
           +SA LVKAAKQFDALVAALPLS+GGE  QLKRIAELQ END+VGQELQKQL+AAE+EL Q
Sbjct: 61  LSAGLVKAAKQFDALVAALPLSEGGEGAQLKRIAELQVENDLVGQELQKQLEAAEKELKQ 120

Query: 121 VQELFSQVADNCLNLKKAD 139
           VQELF Q ADNCLN+KK +
Sbjct: 121 VQELFGQAADNCLNMKKPE 139

The following BLAST results are available for this feature:

BLAST of MELO3C014729 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449895.1	4.9e-64	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 21 [Cucumis melo]...	[more]
TYK21740.1	1.4e-63	99.28	mediator of RNA polymerase II transcription subunit 21 [Cucumis melo var. makuwa...	[more]
XP_004149640.1	3.2e-63	98.55	mediator of RNA polymerase II transcription subunit 21 [Cucumis sativus] >KGN540...	[more]
XP_038902781.1	6.0e-62	96.38	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]	[more]
XP_038893979.1	3.0e-61	95.65	mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida] ...	[more]

BLAST of MELO3C014729 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C0LU16	2.4e-50	78.42	Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana O...	[more]

BLAST of MELO3C014729 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEZ9	2.4e-64	100.00	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]
A0A1S3BN38	2.4e-64	100.00	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo OX=3656 G...	[more]
A0A5D3DEB7	6.9e-64	99.28	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis melo var. maku...	[more]
A0A0A0KZ00	1.5e-63	98.55	Mediator of RNA polymerase II transcription subunit 21 OS=Cucumis sativus OX=365...	[more]
A0A6J1DHM9	2.1e-60	94.93	Mediator of RNA polymerase II transcription subunit 21 OS=Momordica charantia OX...	[more]

BLAST of MELO3C014729 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G04780.1	1.7e-51	78.42	mediator 21	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 92..130
None	No IPR available	GENE3D	6.10.280.10	Mediator complex, subunit Med21	coord: 1..130 e-value: 1.1E-28 score: 102.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
IPR021384	Mediator complex, subunit Med21	PFAM	PF11221	Med21	coord: 1..128 e-value: 2.9E-27 score: 95.7
IPR021384	Mediator complex, subunit Med21	PANTHER	PTHR13381	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	coord: 1..136
IPR037212	Mediator complex, subunit Med7/Med21-like	SUPERFAMILY	140718	Mediator hinge subcomplex-like	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014729.1	MELO3C014729.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex