MELO3C014158 (gene) Melon (DHL92) v4

Overview
NameMELO3C014158
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionglycine-rich cell wall structural protein 1
Locationchr06: 35540402 .. 35541261 (-)
RNA-Seq ExpressionMELO3C014158
SyntenyMELO3C014158
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTAAGATTGTCTTTCTGGTGTTTCTTGGTGCTTTTCTCTTCAGCACTTCCGGAGCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTCCACCGTCCCAGATTTGGAGGTGGTGGACTGGGTGGAGGAGGTGGTGGAGGGTTCGGTGGAGGTGGAGGCGGAGGATTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGAGGAGGGTTTGGTGGCGGAGGTGGTGGTGGAATAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGTGGTGCCGGTGCAGGAGGTGGATACCCTTGAAGGATATGAAATGTTTTTACCATCAAAGGAAAAAGTGTCTTTGAGAAGACCCTATCCATATAGTTTTTGGTATTACAGTTTTTGCATGTGCAATAATGTGGTTTGGTGTGTGTTGTTTTTTGTTCTAAAATTAGAAGGCTTCATATGTGGAAGAACTCTGTCTTTGGCTCACAATTTCGTATATTTCTAATTGTAATTTCCAAGAAATGAAAAGAAAATAAGATTGTATTTTTCAAGGAAAAAAAAAAGTCTCTCAATCTCCATTCTCATACATGAGTTCATTTATGGAGAGAGAGAGAGAGCAAAACGTGAGATATGTACTCTTTCCATTGTCAAGTGTTCACATTCTCATTGGATGACCAATTATAGGAACCAAAGCTAATTCTTTA

mRNA sequence

ATGGCTTCTAAGATTGTCTTTCTGGTGTTTCTTGGGTTTGGTGGCGGAGGTGGTGGTGGAATAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGTGGTGCCGGTGCAGGAGGTGGATACCCTTGAAGGATATGAAATGTTTTTACCATCAAAGGAAAAAGTGTCTTTGAGAAGACCCTATCCATATAGTTTTTGGTATTACAGTTTTTGCATGTGCAATAATGTGGTTTGGTGTGTGTTGTTTTTTGTTCTAAAATTAGAAGGCTTCATATGTGGAAGAACTCTGTCTTTGGCTCACAATTTCGTATATTTCTAATTGTAATTTCCAAGAAATGAAAAGAAAATAAGATTGTATTTTTCAAGGAAAAAAAAAAGTCTCTCAATCTCCATTCTCATACATGAGTTCATTTATGGAGAGAGAGAGAGAGCAAAACGTGAGATATGTACTCTTTCCATTGTCAAGTGTTCACATTCTCATTGGATGACCAATTATAGGAACCAAAGCTAATTCTTTA

Coding sequence (CDS)

ATGGCTTCTAAGATTGTCTTTCTGGTGTTTCTTGGGTTTGGTGGCGGAGGTGGTGGTGGAATAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTTGGTGGTGGTGCCGGTGCAGGAGGTGGATACCCTTGA

Protein sequence

MASKIVFLVFLGFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGGGAGAGGGYP
Homology
[Close]
BLAST of MELO3C014158 vs. NCBI nr
Match: XP_008449198.1 (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 71
           GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG
Sbjct: 74  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 133

Query: 72  GAGAGGGYP 81
           GAGAGGGYP
Sbjct: 134 GAGAGGGYP 142

[Close]
BLAST of MELO3C014158 vs. NCBI nr
Match: KAA0065824.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96563.1 glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.2 bits (139), Expect = 3.9e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 71
           GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG
Sbjct: 88  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 147

Query: 72  GAGAGGGYP 81
           GAGAGGGYP
Sbjct: 148 GAGAGGGYP 156

[Close]
BLAST of MELO3C014158 vs. ExPASy TrEMBL
Match: A0A5D3BB90 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G002250 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 71
           GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG
Sbjct: 88  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 147

Query: 72  GAGAGGGYP 81
           GAGAGGGYP
Sbjct: 148 GAGAGGGYP 156

[Close]
BLAST of MELO3C014158 vs. ExPASy TrEMBL
Match: A0A1S3BLI1 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103491148 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 71
           GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG
Sbjct: 74  GFGGGGGGGIGGGSGFGGGAGFGGGSGGGGGLGGGAGGGGGFGGGGGGGLGGGAGGGFGG 133

Query: 72  GAGAGGGYP 81
           GAGAGGGYP
Sbjct: 134 GAGAGGGYP 142

The following BLAST results are available for this feature:
BLAST of MELO3C014158 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449198.13.9e-05100.00PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo][more]
KAA0065824.13.9e-05100.00glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa] >TYJ96... [more]
BLAST of MELO3C014158 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C014158 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BB901.9e-05100.00Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3BLI11.9e-05100.00glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103491... [more]
BLAST of MELO3C014158 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014158.1MELO3C014158.1mRNA