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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGATTAAGGGTCCAAAATTAACATTTGTTAGGAAACAATTAAAACTCAACTCAAACTTACAAAAAAAATGGTAAGAAGCAAAAAATAAGCTTGGTGGCTCAAATGGCTTGGCTAGGAAGAAGAACTGGCTAAGTGACTCGGCTTGGCTAGGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG mRNA sequence ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG Coding sequence (CDS) ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG Protein sequence MIKGPKLTFEADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGGSGVGCAVRWLTTGRAIAAAAA
Homology
BLAST of MELO3C013585 vs. NCBI nr
Match: KAA0062151.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59 Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 10 EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298
Query: 70 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358
Query: 130 S 131
S
Sbjct: 359 S 359
BLAST of MELO3C013585 vs. ExPASy TrEMBL
Match: A0A5A7V8Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005210 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 5.0e-60 Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0
Query: 10 EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298
Query: 70 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358
Query: 130 S 131
S
Sbjct: 359 S 359
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAA0062151.1 | 1.0e-59 | 94.21 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7V8Y5 | 5.0e-60 | 94.21 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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