Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA
mRNA sequence
ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA
Coding sequence (CDS)
ATGGCTTCATCTCCTCCAAAGAATGCGACACCTACTAAGGATAAGCGCTATAAGAGCATTCCATTGCGTCGTCTATTTAAGAAAGTTCGTCGCTTAGAGGTCGCTGATGATGTCAATCTCCACATTCCCTTAACCAGTCCTGTTTGGAGTGCACATGCAGGTATGTCCTCTGACCCTGGATTACCAGTTATCGTAAAAAAGAAGGTTTCTGATGTCTCTCCGCCACGTACCACTCAACCATCTGCTTCGTCTTCAATTCTAGGATCTAAGGTTTCAATTGAAATAGTAGTTTTAGATTTTGATTCATCGGATGGTGATGACTCTATTGTTCTTTCGAAGCTCCTTCATCGACTCAAGCATGGGAATAAATCTGGTCCATCATCCACTCCGACCCCCACTATCCAGGGTTCTCATTCACCATCGAGATGTTTCTCCTCATCGAGATGTTCCTCCTCGATCTACTGA
Protein sequence
MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPGLPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRCFSSSRCSSSIY
Homology
BLAST of MELO3C013208 vs. NCBI nr
Match:
TYK23204.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 128/183 (69.95%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDP- 60
MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIP+TSPVWSAHAG P
Sbjct: 29 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPITSPVWSAHAGWVPYPV 88
Query: 61 ----------------------------GLPVIVKKKVSD--------VSPPRTTQPSAS 120
G P ++ SPPRTTQPSAS
Sbjct: 89 NTMDTAHFVFDTDTLIKCVHRIGRFSSGGAPKFGDWQIQSRQRAVFIPSSPPRTTQPSAS 148
Query: 121 SSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC 147
SSILGSKVSIE VVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC
Sbjct: 149 SSILGSKVSIETVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC 208
BLAST of MELO3C013208 vs. NCBI nr
Match:
KAA0056471.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK29056.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 146.0 bits (367), Expect = 2.7e-31
Identity = 89/142 (62.68%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MA SP KNA+P K K YKSI LR FKKVR + DD NLHI S V SAHA SS
Sbjct: 29 MAPSPRKNASPVKGKHYKSISLRHPFKKVRCSDATDDSNLHISSASSVQSAHASTSSSHA 88
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFD--SSDGDDSIVLSKLLHRL 120
VIVK KV D SPPR TQPSASSSI S+VSIE V+LD D SS+ D+SIVLSKLL RL
Sbjct: 89 PSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNSDESIVLSKLLRRL 148
Query: 121 KHGNKSGPSSTPTPTIQGSHSP 141
K ++SGP ST PT QG+ SP
Sbjct: 149 KTMDRSGPLSTLAPTAQGTRSP 170
BLAST of MELO3C013208 vs. NCBI nr
Match:
KAA0036115.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK27604.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 134.4 bits (337), Expect = 8.2e-28
Identity = 83/154 (53.90%), Postives = 103/154 (66.88%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MASSP KN + TK K YK+I LRR FKK+R + DD N+HI L SP+ +AHAG S
Sbjct: 28 MASSPLKNVSSTKGKCYKNILLRRPFKKIRYSDATDDSNIHILLASPIQNAHAGTSFGHA 87
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFD--SSDGDDSIVLSKLLHRL 120
+IVK +V DVSPPR T P SSSI GS+V+IE V+LD + SS+GDDS++LSKLLHR
Sbjct: 88 PSIIVKTEVPDVSPPRATLPYTSSSISGSRVAIETVILDSNSASSNGDDSVILSKLLHRF 147
Query: 121 KHGNKSGPSSTPTPTIQGSHSPSRCFSSSRCSSS 153
K G+ GPSS + + CFS+S CS S
Sbjct: 148 KIGD-IGPSSISANCLGYTFPVPCCFSTSGCSFS 180
BLAST of MELO3C013208 vs. NCBI nr
Match:
KAA0045048.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ96279.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 132.5 bits (332), Expect = 3.1e-27
Identity = 80/133 (60.15%), Postives = 90/133 (67.67%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
+A SP KNA P K K YK IPLR LFKKVRR + A D NL+IPL SAH SDP
Sbjct: 29 LAPSPTKNAPPAKGKSYKGIPLRCLFKKVRRSDAATDKNLYIPLKILARSAHVSKPSDPV 88
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSI-VLSKLLHRLK 120
V VKK+V DVSPPRTTQPS SSSILG +VSIE +VLDFDSSDGDD + V S+ R K
Sbjct: 89 SSVTVKKEVPDVSPPRTTQPSTSSSILGLRVSIETMVLDFDSSDGDDYVDVSSRFTDRGK 148
Query: 121 HGNKSGPSSTPTP 133
+ P S P+P
Sbjct: 149 --SHVTPLSPPSP 159
BLAST of MELO3C013208 vs. NCBI nr
Match:
KAA0068158.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 118.6 bits (296), Expect = 4.7e-23
Identity = 77/145 (53.10%), Postives = 92/145 (63.45%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MA SP K AT K KRYK IP R FKK+RR VA D +TSP+ S HAG S DP
Sbjct: 66 MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKH 120
PVIVKK+V + P T PSASSS+LG + S+E VVL+ SSDG+D+++LS LLHR
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHR--- 185
Query: 121 GNKSGPSSTPTPTIQGSHSPSRCFS 146
K+G S+ P PT Q SP R S
Sbjct: 186 --KAGNSTYPKPT-QVPRSPPRVAS 204
BLAST of MELO3C013208 vs. ExPASy TrEMBL
Match:
A0A5D3DHU6 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G002360 PE=4 SV=1)
HSP 1 Score: 223.8 bits (569), Expect = 5.0e-55
Identity = 128/183 (69.95%), Postives = 131/183 (71.58%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDP- 60
MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIP+TSPVWSAHAG P
Sbjct: 29 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPITSPVWSAHAGWVPYPV 88
Query: 61 ----------------------------GLPVIVKKKVSD--------VSPPRTTQPSAS 120
G P ++ SPPRTTQPSAS
Sbjct: 89 NTMDTAHFVFDTDTLIKCVHRIGRFSSGGAPKFGDWQIQSRQRAVFIPSSPPRTTQPSAS 148
Query: 121 SSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC 147
SSILGSKVSIE VVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC
Sbjct: 149 SSILGSKVSIETVVLDFDSSDGDDSIVLSKLLHRLKHGNKSGPSSTPTPTIQGSHSPSRC 208
BLAST of MELO3C013208 vs. ExPASy TrEMBL
Match:
A0A5D3DZG0 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001740 PE=4 SV=1)
HSP 1 Score: 146.0 bits (367), Expect = 1.3e-31
Identity = 89/142 (62.68%), Postives = 98/142 (69.01%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MA SP KNA+P K K YKSI LR FKKVR + DD NLHI S V SAHA SS
Sbjct: 29 MAPSPRKNASPVKGKHYKSISLRHPFKKVRCSDATDDSNLHISSASSVQSAHASTSSSHA 88
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFD--SSDGDDSIVLSKLLHRL 120
VIVK KV D SPPR TQPSASSSI S+VSIE V+LD D SS+ D+SIVLSKLL RL
Sbjct: 89 PSVIVKIKVPDGSPPRFTQPSASSSISRSRVSIETVILDLDSASSNSDESIVLSKLLRRL 148
Query: 121 KHGNKSGPSSTPTPTIQGSHSP 141
K ++SGP ST PT QG+ SP
Sbjct: 149 KTMDRSGPLSTLAPTAQGTRSP 170
BLAST of MELO3C013208 vs. ExPASy TrEMBL
Match:
A0A5D3DVS7 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold86G00220 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 83/154 (53.90%), Postives = 103/154 (66.88%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MASSP KN + TK K YK+I LRR FKK+R + DD N+HI L SP+ +AHAG S
Sbjct: 28 MASSPLKNVSSTKGKCYKNILLRRPFKKIRYSDATDDSNIHILLASPIQNAHAGTSFGHA 87
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFD--SSDGDDSIVLSKLLHRL 120
+IVK +V DVSPPR T P SSSI GS+V+IE V+LD + SS+GDDS++LSKLLHR
Sbjct: 88 PSIIVKTEVPDVSPPRATLPYTSSSISGSRVAIETVILDSNSASSNGDDSVILSKLLHRF 147
Query: 121 KHGNKSGPSSTPTPTIQGSHSPSRCFSSSRCSSS 153
K G+ GPSS + + CFS+S CS S
Sbjct: 148 KIGD-IGPSSISANCLGYTFPVPCCFSTSGCSFS 180
BLAST of MELO3C013208 vs. ExPASy TrEMBL
Match:
A0A5D3BBA3 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00720 PE=4 SV=1)
HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 80/133 (60.15%), Postives = 90/133 (67.67%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
+A SP KNA P K K YK IPLR LFKKVRR + A D NL+IPL SAH SDP
Sbjct: 29 LAPSPTKNAPPAKGKSYKGIPLRCLFKKVRRSDAATDKNLYIPLKILARSAHVSKPSDPV 88
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSI-VLSKLLHRLK 120
V VKK+V DVSPPRTTQPS SSSILG +VSIE +VLDFDSSDGDD + V S+ R K
Sbjct: 89 SSVTVKKEVPDVSPPRTTQPSTSSSILGLRVSIETMVLDFDSSDGDDYVDVSSRFTDRGK 148
Query: 121 HGNKSGPSSTPTP 133
+ P S P+P
Sbjct: 149 --SHVTPLSPPSP 159
BLAST of MELO3C013208 vs. ExPASy TrEMBL
Match:
A0A5D3DC52 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00430 PE=4 SV=1)
HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 77/145 (53.10%), Postives = 92/145 (63.45%), Query Frame = 0
Query: 1 MASSPPKNATPTKDKRYKSIPLRRLFKKVRRLEVADDVNLHIPLTSPVWSAHAGMSSDPG 60
MA SP K AT K KRYK IP R FKK+RR VA D +TSP+ S HAG S DP
Sbjct: 66 MAPSPSKTATTMKGKRYKGIPTRHPFKKIRRSVVAFDEGQQSLVTSPIRSTHAGRSPDPI 125
Query: 61 LPVIVKKKVSDVSPPRTTQPSASSSILGSKVSIEIVVLDFDSSDGDDSIVLSKLLHRLKH 120
PVIVKK+V + P T PSASSS+LG + S+E VVL+ SSDG+D+++LS LLHR
Sbjct: 126 SPVIVKKEVLEGFPLYTCHPSASSSVLGHRGSVEKVVLNSYSSDGEDNVLLSTLLHR--- 185
Query: 121 GNKSGPSSTPTPTIQGSHSPSRCFS 146
K+G S+ P PT Q SP R S
Sbjct: 186 --KAGNSTYPKPT-QVPRSPPRVAS 204
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK23204.1 | 1.0e-54 | 69.95 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0056471.1 | 2.7e-31 | 62.68 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK29056.1 flocculat... | [more] |
KAA0036115.1 | 8.2e-28 | 53.90 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK27604.1 flocculat... | [more] |
KAA0045048.1 | 3.1e-27 | 60.15 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYJ96279.1 flocculat... | [more] |
KAA0068158.1 | 4.7e-23 | 53.10 | flocculation protein FLO11-like [Cucumis melo var. makuwa] >TYK21078.1 flocculat... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DHU6 | 5.0e-55 | 69.95 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3DZG0 | 1.3e-31 | 62.68 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3DVS7 | 4.0e-28 | 53.90 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3BBA3 | 1.5e-27 | 60.15 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
A0A5D3DC52 | 2.3e-23 | 53.10 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... | [more] |
Match Name | E-value | Identity | Description | |