MELO3C013164 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013164
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr11: 8768252 .. 8768777 (-)
RNA-Seq Expression	MELO3C013164
Synteny	MELO3C013164

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCATGTTTTCAATTGCACTGCCGTTTCCAAACATGGTGCATTTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGACATATGTTGAAGAATATGTTGATGTTGACCCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACAAATAAACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

mRNA sequence

ATGAACACCATGTTTTCAATTGCACTGCCGTTTCCAAACATGGTGCATTTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGACATATGTTGAAGAATATGTTGATGTTGACCCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACAAATAAACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

Coding sequence (CDS)

ATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATA

Protein sequence

MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVKCFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI

Homology

[Close]

BLAST of MELO3C013164 vs. NCBI nr
Match: TYJ98388.1 (uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
          MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK
Sbjct: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60

Query: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
          CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI
Sbjct: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 98

[Close]

BLAST of MELO3C013164 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENKEM+QHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-47
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+N KLYTGMICENKEMLQHMVK
Sbjct: 21  MDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVK 80

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 81  CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 118

[Close]

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3BJL0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001350 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.6e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
          MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK
Sbjct: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60

Query: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
          CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI
Sbjct: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 98

[Close]

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENKEM+QHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

[Close]

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.9e-48
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+N KLYTGMICENKEMLQHMVK
Sbjct: 21  MDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVK 80

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 81  CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 118

The following BLAST results are available for this feature:

BLAST of MELO3C013164 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98388.1	2.0e-51	100.00	uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa]	[more]
KAA0034014.1	2.7e-48	94.90	uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa]	[more]
KAA0036768.1	3.5e-48	94.90	uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa]	[more]
TYJ95836.1	3.5e-48	94.90	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK27427.1	1.0e-47	94.90	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO3C013164 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C013164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJL0	9.6e-52	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SS31	1.3e-48	94.90	DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3BAB0	1.7e-48	94.90	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5A7T1X8	1.7e-48	94.90	SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A5D3DUI1	4.9e-48	94.90	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO3C013164 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004332	Transposase, MuDR, plant	PFAM	PF03108	DBD_Tnp_Mut	coord: 42..97 e-value: 1.3E-8 score: 34.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013164.1	MELO3C013164.1	mRNA