MELO3C013080 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013080
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cell wall protein RBR3-like
Location	chr04: 17020360 .. 17020884 (-)
RNA-Seq Expression	MELO3C013080
Synteny	MELO3C013080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

mRNA sequence

ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

Coding sequence (CDS)

ATGGTTCTTGATTATTGGTTAAGCAAGATGGTGAATACTCGTCGAGGAAAGTATCAAACTCGTTCAACTCCAGTTGGTTTCGAAGATGTTAGCACCAAAACGAACATGCATGGTGTTCGAATGAGGGGCACCAATTCAAAACTACCCCATCTCGACGTTCCTACCGTCTACCGTCTGAAAGAAGTTACATACCACCTTTCGATCCTTCTGAGGAGTCTTTTGCATGATGATCTTGTTAATTCAAATGCTTTCGAGCATGTTGGCCATCAAAAGTCAAACTTATCTGATATGGACTCAGATGAAAGAGATGATGTACCTCTCGTTCATATTTTGAAGCGTGGGGTTTTTAGCAAAAAATCTCAACCAGATGTTAGTATTCCTGATCCTTCTGCTGCAACTCATTCTTTAGGTGTTTCCTCTGTTTCTCTGCACTTCACGAGTAGCTCTTCTCAGGATGATATCCTCGCTTCGAATGTGCCACAACACTCAAGTGGAAATGTGTCTCAAGGTTCGAACTTCAGATAA

Protein sequence

MVLDYWLSKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQGSNFR

Homology

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BLAST of MELO3C013080 vs. NCBI nr
Match: KAA0056755.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK21011.1 cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 8.4e-29
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 0


Query: 10  MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
           MVNTRR KYQ RST +G ED S++TNMH VR+RG   K      P     K+     S  
Sbjct: 1   MVNTRREKYQVRSTSIGSEDDSSRTNMHDVRIRGYQFKTTPSRRPYRLPSKQNQVSPSDP 60

Query: 70  LRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDP 129
            +  L  D V+S   E+VGH +S+LSDMD ++RD+VPL HILKRGVF K +Q D  +P  
Sbjct: 61  TKDSLFSDPVDSVVPENVGHHESDLSDMDPNKRDNVPLFHILKRGVFGKNTQLDSDVPCA 120

Query: 130 SAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           S+   S     VSLHFTSSSS +DI ASN P HSS N+SQ
Sbjct: 121 SSVVSSPSGHFVSLHFTSSSSNNDIPASNEPHHSSDNLSQ 160

[Close]

BLAST of MELO3C013080 vs. NCBI nr
Match: KAA0036711.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK03686.1 cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-28
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 10 MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
          MVNTRRGKYQTRST VGFEDVSTKTNMHGVRMRG NSKLPHLDVPTVYRLKEVTYHL IL
Sbjct: 1  MVNTRRGKYQTRSTSVGFEDVSTKTNMHGVRMRGINSKLPHLDVPTVYRLKEVTYHLPIL 60

Query: 70 LRSLLHDDLV 80
          LRSLLHDDLV
Sbjct: 61 LRSLLHDDLV 70

[Close]

BLAST of MELO3C013080 vs. NCBI nr
Match: TYK27718.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 6.7e-26
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQKSN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 253 LHVDPVRSYVPEHVSHQKSNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 312

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSSS QDDIL+ NV QHSSGNVSQ
Sbjct: 313 HPSGVPFVSLHSTSSSFQDDILSLNVAQHSSGNVSQ 348

[Close]

BLAST of MELO3C013080 vs. NCBI nr
Match: TYK03313.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-25
Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 8   SKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLS 67
           S +VNTRRGKYQ RST VG ED S++ NMHGV              PT            
Sbjct: 112 SSIVNTRRGKYQVRSTSVGSEDDSSRMNMHGVSPPD----------PT------------ 171

Query: 68  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 127
              +  L  + V+S   ++VGH +SN+SDMDS+E DDVPL+HILK+ VF K +Q D  +P
Sbjct: 172 ---KESLFSNPVDSIVLKNVGHYESNVSDMDSNESDDVPLIHILKQRVFGKSTQLDSGVP 231

Query: 128 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQG 171
             S    S    SVSLHF+SSSS++++ ASN+P HSS N SQG
Sbjct: 232 GASNIIPSQSGHSVSLHFSSSSSKNNVPASNIPHHSSDNSSQG 249

[Close]

BLAST of MELO3C013080 vs. NCBI nr
Match: KAA0056035.1 (uncharacterized protein E6C27_scaffold319G001900 [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 9.6e-25
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQ+SN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 129 LHVDPVRSYVPEHVSHQESNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 188

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSS  QDDIL+ NV QHSSGNVSQ
Sbjct: 189 HPSGVPFVSLHSTSSFFQDDILSLNVAQHSSGNVSQ 224

[Close]

BLAST of MELO3C013080 vs. ExPASy TrEMBL
Match: A0A5A7UT97 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold778G00020 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.1e-29
Identity = 83/160 (51.88%), Postives = 101/160 (63.12%), Query Frame = 0


Query: 10  MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
           MVNTRR KYQ RST +G ED S++TNMH VR+RG   K      P     K+     S  
Sbjct: 1   MVNTRREKYQVRSTSIGSEDDSSRTNMHDVRIRGYQFKTTPSRRPYRLPSKQNQVSPSDP 60

Query: 70  LRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDP 129
            +  L  D V+S   E+VGH +S+LSDMD ++RD+VPL HILKRGVF K +Q D  +P  
Sbjct: 61  TKDSLFSDPVDSVVPENVGHHESDLSDMDPNKRDNVPLFHILKRGVFGKNTQLDSDVPCA 120

Query: 130 SAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           S+   S     VSLHFTSSSS +DI ASN P HSS N+SQ
Sbjct: 121 SSVVSSPSGHFVSLHFTSSSSNNDIPASNEPHHSSDNLSQ 160

[Close]

BLAST of MELO3C013080 vs. ExPASy TrEMBL
Match: A0A5D3BZR7 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00460 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 6.9e-29
Identity = 67/70 (95.71%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 10 MVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLSIL 69
          MVNTRRGKYQTRST VGFEDVSTKTNMHGVRMRG NSKLPHLDVPTVYRLKEVTYHL IL
Sbjct: 1  MVNTRRGKYQTRSTSVGFEDVSTKTNMHGVRMRGINSKLPHLDVPTVYRLKEVTYHLPIL 60

Query: 70 LRSLLHDDLV 80
          LRSLLHDDLV
Sbjct: 61 LRSLLHDDLV 70

[Close]

BLAST of MELO3C013080 vs. ExPASy TrEMBL
Match: A0A5D3DW56 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00590 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.2e-26
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0


Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQKSN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 253 LHVDPVRSYVPEHVSHQKSNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 312

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSSS QDDIL+ NV QHSSGNVSQ
Sbjct: 313 HPSGVPFVSLHSTSSSFQDDILSLNVAQHSSGNVSQ 348

[Close]

BLAST of MELO3C013080 vs. ExPASy TrEMBL
Match: A0A5D3BUG5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001600 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.6e-25
Identity = 77/163 (47.24%), Postives = 98/163 (60.12%), Query Frame = 0


Query: 8   SKMVNTRRGKYQTRSTPVGFEDVSTKTNMHGVRMRGTNSKLPHLDVPTVYRLKEVTYHLS 67
           S +VNTRRGKYQ RST VG ED S++ NMHGV              PT            
Sbjct: 112 SSIVNTRRGKYQVRSTSVGSEDDSSRMNMHGVSPPD----------PT------------ 171

Query: 68  ILLRSLLHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIP 127
              +  L  + V+S   ++VGH +SN+SDMDS+E DDVPL+HILK+ VF K +Q D  +P
Sbjct: 172 ---KESLFSNPVDSIVLKNVGHYESNVSDMDSNESDDVPLIHILKQRVFGKSTQLDSGVP 231

Query: 128 DPSAATHSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQG 171
             S    S    SVSLHF+SSSS++++ ASN+P HSS N SQG
Sbjct: 232 GASNIIPSQSGHSVSLHFSSSSSKNNVPASNIPHHSSDNSSQG 249

[Close]

BLAST of MELO3C013080 vs. ExPASy TrEMBL
Match: A0A5A7UQX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001900 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 4.6e-25
Identity = 68/96 (70.83%), Postives = 73/96 (76.04%), Query Frame = 0


Query: 74  LHDDLVNSNAFEHVGHQKSNLSDMDSDERDDVPLVHILKRGVFSKKSQPDVSIPDPSAAT 133
           LH D V S   EHV HQ+SN SDMDSD+RDDV L+HILK GVFS KSQP+VSIP PS A 
Sbjct: 129 LHVDPVRSYVPEHVSHQESNFSDMDSDKRDDVSLIHILKHGVFSIKSQPNVSIPGPSTAN 188

Query: 134 HSLGVSSVSLHFTSSSSQDDILASNVPQHSSGNVSQ 170
           H  GV  VSLH TSS  QDDIL+ NV QHSSGNVSQ
Sbjct: 189 HPSGVPFVSLHSTSSFFQDDILSLNVAQHSSGNVSQ 224

The following BLAST results are available for this feature:

BLAST of MELO3C013080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056755.1	8.4e-29	51.88	cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK21011.1 cell wall pro...	[more]
KAA0036711.1	1.4e-28	95.71	cell wall protein RBR3-like [Cucumis melo var. makuwa] >TYK03686.1 cell wall pro...	[more]
TYK27718.1	6.7e-26	72.92	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK03313.1	3.3e-25	47.24	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0056035.1	9.6e-25	70.83	uncharacterized protein E6C27_scaffold319G001900 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C013080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C013080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UT97	4.1e-29	51.88	Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3BZR7	6.9e-29	95.71	Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3DW56	3.2e-26	72.92	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3BUG5	1.6e-25	47.24	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UQX6	4.6e-25	70.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C013080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013080.1	MELO3C013080.1	mRNA