MELO3C012942 (gene) Melon (DHL92) v4

Overview
NameMELO3C012942
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGirdin-like
Locationchr04: 14663852 .. 14664934 (-)
RNA-Seq ExpressionMELO3C012942
SyntenyMELO3C012942
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTATGTCAGGTGTAGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTAATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGGTAGTTGAAAGGGGAAAAGAGACAAGCTTCGAACAACCAAATCAATGGATTGAGAAGAGCATAGAACTAGAAGAGAAAAATCGACTGTTAGAGCAAGAGAACGAGAAACTTCGTAAAGAGACAAGTCAATGGATGGATCATGCGACTTATTTGCAGAACGAACTCGAAAAAACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGGATCTTGAAACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAATGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGCGTTAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTAAAGAGTATGAGATACTGATAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATACACAAGAATATGAGTCATTGAATACAGATTATGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

mRNA sequence

ATGAGGAGGTGTTAACTATACACCATTGTTAGTTTTATGTCAGGTGTAGCTCAAACAGTTTATACCACCAACTCATAATCTGCAAGAGTAATTTTTCATACGATCCTGAAGATTGTCAAGGAAAAAACGTCAAGCAGTATGCGCATGGAAATCTATAAGAAAGATAAAAGACAAAGGACATTACGAAGGAGTTACTAGTGGGTACGAGACATGGCAGGCAAACAGAAGGAAGAATATAATAGATATCTCAAGGGAGAACGAACTCGAAAAAACTAAGAGTTTCTTAAAAAATCAAGATAAGTTAGAAAAGGATCTTGAAACTTTAGATAAGGAGATGAGGCGAATGAATAAAGCAAATAGAAGCTTGAAAAATGAGAAGACAACATTACAAGCAACAGTGGGGTCGCAAGATGAATATATTAAAGATTTAGAAAATGGGAAGGAATATTTTCTTGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACGAGAAACACAAATAATGGATTTGGAAGCACAAAATCATTCTTTGCGTTAAACTGTTGATAGCCTACATCTGAAGATGGCCAAGCGCTCTAAAGAGTATGAGATACTGATAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTCAAAATTCAAGTAAGAGGATACACAAGAATATGAGTCATTGAATACAGATTATGTGCAAATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

Coding sequence (CDS)

ATGAAGGTTGATTATGATCTGCAAACGAGAGATTTCCAAGTGCTAGTGGAACGTGTAGATCAGACAATCGAATTTCTCAGAATGGTGTCCAAAAGAGCAAATGGTTTTGCAGAATGGGCAGCTGATTTGAGAGTTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTAAATAGATTCTTGAAGATGATATGCAGAGAACTGGGACATTTTGAGCGTTTTCATTTA

Protein sequence

MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRFLKMICRELGHFERFHL
Homology
[Close]
BLAST of MELO3C012942 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFS+QPHADDLNRF
Sbjct: 251 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 310

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 311 LKMICRELGHFGRFH 325

[Close]
BLAST of MELO3C012942 vs. NCBI nr
Match: KAA0062685.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 3.2e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFS+QPHADDLNRF
Sbjct: 274 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 333

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF  FH
Sbjct: 334 LKMICRELGHFGHFH 348

[Close]
BLAST of MELO3C012942 vs. NCBI nr
Match: TYK04062.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 5.5e-33
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAE AADLRVNFFSMQPHADDLNRF
Sbjct: 66  MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 126 LKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C012942 vs. NCBI nr
Match: KAA0060422.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 9.3e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYD++TRDFQVLVERVDQTIEFLRMVSKRANGF EW ADLRVNFFSMQPHADDLNRF
Sbjct: 157 MKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHADDLNRF 216

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 217 LKMICRELGHFGRFH 231

[Close]
BLAST of MELO3C012942 vs. NCBI nr
Match: KAA0037619.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 9.3e-33
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MK+DYDL+TRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVN FSMQPHADDLNRF
Sbjct: 66  MKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHADDLNRF 125

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 126 LKMICRELGHFGRFH 140

[Close]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.1e-34
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFS+QPHADDLNRF
Sbjct: 251 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 310

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 311 LKMICRELGHFGRFH 325

[Close]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match: A0A5A7V9X6 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFS+QPHADDLNRF
Sbjct: 274 MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSIQPHADDLNRF 333

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF  FH
Sbjct: 334 LKMICRELGHFGHFH 348

[Close]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match: A0A5D3BYW3 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.6e-33
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAE AADLRVNFFSMQPHADDLNRF
Sbjct: 66  MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAECAADLRVNFFSMQPHADDLNRF 125

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 126 LKMICRELGHFRRFH 140

[Close]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match: A0A5A7T8J1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.5e-33
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MK+DYDL+TRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVN FSMQPHADDLNRF
Sbjct: 66  MKIDYDLRTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNCFSMQPHADDLNRF 125

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 126 LKMICRELGHFGRFH 140

[Close]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match: A0A5A7UX37 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.5e-33
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1   MKVDYDLQTRDFQVLVERVDQTIEFLRMVSKRANGFAEWAADLRVNFFSMQPHADDLNRF 60
           MKVDYD++TRDFQVLVERVDQTIEFLRMVSKRANGF EW ADLRVNFFSMQPHADDLNRF
Sbjct: 157 MKVDYDMETRDFQVLVERVDQTIEFLRMVSKRANGFVEWTADLRVNFFSMQPHADDLNRF 216

Query: 61  LKMICRELGHFERFH 76
           LKMICRELGHF RFH
Sbjct: 217 LKMICRELGHFGRFH 231

The following BLAST results are available for this feature:
BLAST of MELO3C012942 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23632.18.4e-3497.33girdin-like [Cucumis melo var. makuwa][more]
KAA0062685.13.2e-3396.00girdin-like [Cucumis melo var. makuwa][more]
TYK04062.15.5e-3397.33girdin-like [Cucumis melo var. makuwa][more]
KAA0060422.19.3e-3393.33girdin-like [Cucumis melo var. makuwa][more]
KAA0037619.19.3e-3394.67girdin-like [Cucumis melo var. makuwa][more]
BLAST of MELO3C012942 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DJ954.1e-3497.33Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5A7V9X61.6e-3396.00Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1576G00140 P... [more]
A0A5D3BYW32.6e-3397.33Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3019G00040 P... [more]
A0A5A7T8J14.5e-3394.67Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G002800 P... [more]
A0A5A7UX374.5e-3393.33Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G002410 PE... [more]
BLAST of MELO3C012942 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012942.1MELO3C012942.1mRNA