Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGTACAGTTAGGTTATTAGTTCTGTAGACAGTTATTCATTTTTAATATAAAATAAAATAAAAATTTACTATAACACTTGAACATAATCATCCTGTTGCCAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG
mRNA sequence
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG
Coding sequence (CDS)
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG
Protein sequence
MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR
Homology
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match:
KAA0037928.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19005.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 297 bits (760), Expect = 3.00e-101
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWG 60
MAEKMPERNIQASTID Q TLKRMFQ IA+MFGPLCNGFDWNVELKCII EKELSDNWG
Sbjct: 2 MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWG 61
Query: 61 LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQR 120
LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVF GYEGFFTDDRNDMEILMMYSQR
Sbjct: 62 LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQR 121
Query: 121 LGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
LGMSPDDIMGTR DNSSDGRISSSESKRKQEAKR
Sbjct: 122 LGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match:
KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 161 bits (407), Expect = 5.93e-46
Identity = 83/157 (52.87%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
M K+P N+ AS ID +I LKRMF A+A+M GP C GF WN E KCI+AEKE+ D+W
Sbjct: 52 MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
GLLNK FPHYD+L Y+FGKDR + +TFTN G N GYE F D +D +
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
+MYSQ L MS D++M TR S+GR SS SKRK
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRK 208
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match:
KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 159 bits (402), Expect = 3.35e-45
Identity = 85/157 (54.14%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
MA K+P N+ ASTID +I LKRMF AIA+M GP C+GF WN E KCI+AEKE+ DNW
Sbjct: 52 MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111
Query: 61 -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
GLL K F HYD+L Y+FGKDRA A++F + G N GYE F + D
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
MYSQ L MSPD++MGTR S+GR SS SKRK
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRK 208
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match:
KAA0033263.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 156 bits (394), Expect = 4.02e-45
Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = 0
Query: 1 MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
MAEK+P ++A+T ID +I TLKR FQAIA+M GP C+GF WN E KCI+AEKEL DNW
Sbjct: 2 MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSGFGWNDEEKCIVAEKELFDNW 61
Query: 61 ------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNV-FGGYEGFFTDDRNDME 120
GLLNKSFP+YD+L Y+FG+DRA A+TF + G N GGY+ F D N+ +
Sbjct: 62 SHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-D 121
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
+YSQ + +S DD+ +RP +S+GR SS SKRK+E++R
Sbjct: 122 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRESQR 162
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match:
KAA0042063.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18005.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 157 bits (396), Expect = 9.18e-45
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 0
Query: 1 MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
MA+K+P ++A+T ID +I TLKR FQAIAKM GP C+GF+WN E K IIAEKEL DNW
Sbjct: 28 MAKKLPRCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFEWNDEEKFIIAEKELFDNW 87
Query: 61 --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDM 120
GLLNK FP+YD+L Y+FG+DRA A+TF + G N GGY+ F D N+
Sbjct: 88 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFVDVGSNESGGYDRFDMGDENE- 147
Query: 121 EILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
+ +YSQ + +S DD+ +RP +S+GRI SS SKRK+ ++R
Sbjct: 148 KFPPVYSQGIDLSQDDVRASRPSRASEGRIGSSGSKRKRGSQR 189
BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3D647 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00310 PE=4 SV=1)
HSP 1 Score: 297 bits (760), Expect = 1.45e-101
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWG 60
MAEKMPERNIQASTID Q TLKRMFQ IA+MFGPLCNGFDWNVELKCII EKELSDNWG
Sbjct: 2 MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWG 61
Query: 61 LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQR 120
LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVF GYEGFFTDDRNDMEILMMYSQR
Sbjct: 62 LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQR 121
Query: 121 LGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
LGMSPDDIMGTR DNSSDGRISSSESKRKQEAKR
Sbjct: 122 LGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155
BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)
HSP 1 Score: 161 bits (407), Expect = 2.87e-46
Identity = 83/157 (52.87%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
M K+P N+ AS ID +I LKRMF A+A+M GP C GF WN E KCI+AEKE+ D+W
Sbjct: 52 MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111
Query: 61 -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
GLLNK FPHYD+L Y+FGKDR + +TFTN G N GYE F D +D +
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
+MYSQ L MS D++M TR S+GR SS SKRK
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRK 208
BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)
HSP 1 Score: 159 bits (402), Expect = 1.62e-45
Identity = 85/157 (54.14%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 1 MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
MA K+P N+ ASTID +I LKRMF AIA+M GP C+GF WN E KCI+AEKE+ DNW
Sbjct: 52 MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111
Query: 61 -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
GLL K F HYD+L Y+FGKDRA A++F + G N GYE F + D
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
MYSQ L MSPD++MGTR S+GR SS SKRK
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRK 208
BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7SS54 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00600 PE=4 SV=1)
HSP 1 Score: 156 bits (394), Expect = 1.95e-45
Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = 0
Query: 1 MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
MAEK+P ++A+T ID +I TLKR FQAIA+M GP C+GF WN E KCI+AEKEL DNW
Sbjct: 2 MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSGFGWNDEEKCIVAEKELFDNW 61
Query: 61 ------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNV-FGGYEGFFTDDRNDME 120
GLLNKSFP+YD+L Y+FG+DRA A+TF + G N GGY+ F D N+ +
Sbjct: 62 SHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-D 121
Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
+YSQ + +S DD+ +RP +S+GR SS SKRK+E++R
Sbjct: 122 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRESQR 162
BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3D2M5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003170 PE=4 SV=1)
HSP 1 Score: 157 bits (396), Expect = 4.44e-45
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 0
Query: 1 MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
MA+K+P ++A+T ID +I TLKR FQAIAKM GP C+GF+WN E K IIAEKEL DNW
Sbjct: 28 MAKKLPRCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFEWNDEEKFIIAEKELFDNW 87
Query: 61 --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDM 120
GLLNK FP+YD+L Y+FG+DRA A+TF + G N GGY+ F D N+
Sbjct: 88 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFVDVGSNESGGYDRFDMGDENE- 147
Query: 121 EILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
+ +YSQ + +S DD+ +RP +S+GRI SS SKRK+ ++R
Sbjct: 148 KFPPVYSQGIDLSQDDVRASRPSRASEGRIGSSGSKRKRGSQR 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0037928.1 | 3.00e-101 | 94.81 | retrotransposon protein [Cucumis melo var. makuwa] >TYK19005.1 retrotransposon p... | [more] |
KAA0037854.1 | 5.93e-46 | 52.87 | retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p... | [more] |
KAA0054347.1 | 3.35e-45 | 54.14 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... | [more] |
KAA0033263.1 | 4.02e-45 | 53.09 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0042063.1 | 9.18e-45 | 52.15 | retrotransposon protein [Cucumis melo var. makuwa] >TYK18005.1 retrotransposon p... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D647 | 1.45e-101 | 94.81 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3CHG6 | 2.87e-46 | 52.87 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7UIE9 | 1.62e-45 | 54.14 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7SS54 | 1.95e-45 | 53.09 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3D2M5 | 4.44e-45 | 52.15 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |