MELO3C012830.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012830.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr04: 12738542 .. 12739107 (+)
RNA-Seq ExpressionMELO3C012830.jh1
SyntenyMELO3C012830.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGTACAGTTAGGTTATTAGTTCTGTAGACAGTTATTCATTTTTAATATAAAATAAAATAAAAATTTACTATAACACTTGAACATAATCATCCTGTTGCCAAGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

mRNA sequence

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Coding sequence (CDS)

ATGGCTGAGAAGATGCCAGAACGTAACATCCAGGCTTCAACTATTGATTTTCAGATAAATACCCTAAAGAGAATGTTCCAGGCCATAGCAAAAATGTTCGGCCCGTTGTGCAATGGGTTTGATTGGAACGTTGAACTCAAGTGCATCATCGCAGAGAAGGAATTGTCCGACAATTGGGGCCTCCTAAACAAATCCTTTCCCCATTACGACGACTTGTGCTACATATTTGGGAAAGATCGTGCGATAGTAGAGCACGCAAAGACATTCACCAATGCAGGGTTGAATGTGTTTGGAGGGTACGAGGGATTTTTCACTGACGATAGAAATGATATGGAGATCCTTATGATGTATAGTCAGAGACTAGGCATGTCGCCTGACGACATCATGGGCACACGACCCGATAACTCAAGTGATGGTAGGATTAGTTCAAGCGAGTCAAAGAGGAAGCAGGAGGCCAAGCGATAG

Protein sequence

MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWGLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR
Homology
BLAST of MELO3C012830.jh1 vs. NCBI nr
Match: KAA0037928.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19005.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 297 bits (760), Expect = 3.00e-101
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWG 60
           MAEKMPERNIQASTID Q  TLKRMFQ IA+MFGPLCNGFDWNVELKCII EKELSDNWG
Sbjct: 2   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWG 61

Query: 61  LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQR 120
           LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVF GYEGFFTDDRNDMEILMMYSQR
Sbjct: 62  LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQR 121

Query: 121 LGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
           LGMSPDDIMGTR DNSSDGRISSSESKRKQEAKR
Sbjct: 122 LGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155

BLAST of MELO3C012830.jh1 vs. NCBI nr
Match: KAA0037854.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161 bits (407), Expect = 5.93e-46
Identity = 83/157 (52.87%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
           M  K+P  N+ AS ID +I  LKRMF A+A+M GP C GF WN E KCI+AEKE+ D+W 
Sbjct: 52  MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
                  GLLNK FPHYD+L Y+FGKDR +    +TFTN G N   GYE F  D  +D +
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
             +MYSQ L MS D++M TR    S+GR  SS SKRK
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRK 208

BLAST of MELO3C012830.jh1 vs. NCBI nr
Match: KAA0054347.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (402), Expect = 3.35e-45
Identity = 85/157 (54.14%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
           MA K+P  N+ ASTID +I  LKRMF AIA+M GP C+GF WN E KCI+AEKE+ DNW 
Sbjct: 52  MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
                  GLL K F HYD+L Y+FGKDRA    A++F + G N   GYE F  +   D  
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
              MYSQ L MSPD++MGTR    S+GR  SS SKRK
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRK 208

BLAST of MELO3C012830.jh1 vs. NCBI nr
Match: KAA0033263.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (394), Expect = 4.02e-45
Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = 0

Query: 1   MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
           MAEK+P   ++A+T ID +I TLKR FQAIA+M GP C+GF WN E KCI+AEKEL DNW
Sbjct: 2   MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSGFGWNDEEKCIVAEKELFDNW 61

Query: 61  ------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNV-FGGYEGFFTDDRNDME 120
                 GLLNKSFP+YD+L Y+FG+DRA    A+TF + G N   GGY+ F   D N+ +
Sbjct: 62  SHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-D 121

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
              +YSQ + +S DD+  +RP  +S+GR  SS SKRK+E++R
Sbjct: 122 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRESQR 162

BLAST of MELO3C012830.jh1 vs. NCBI nr
Match: KAA0042063.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK18005.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (396), Expect = 9.18e-45
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 1   MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
           MA+K+P   ++A+T ID +I TLKR FQAIAKM GP C+GF+WN E K IIAEKEL DNW
Sbjct: 28  MAKKLPRCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFEWNDEEKFIIAEKELFDNW 87

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDM 120
                   GLLNK FP+YD+L Y+FG+DRA    A+TF + G N  GGY+ F   D N+ 
Sbjct: 88  VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFVDVGSNESGGYDRFDMGDENE- 147

Query: 121 EILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
           +   +YSQ + +S DD+  +RP  +S+GRI SS SKRK+ ++R
Sbjct: 148 KFPPVYSQGIDLSQDDVRASRPSRASEGRIGSSGSKRKRGSQR 189

BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D647 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00310 PE=4 SV=1)

HSP 1 Score: 297 bits (760), Expect = 1.45e-101
Identity = 146/154 (94.81%), Postives = 147/154 (95.45%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNWG 60
           MAEKMPERNIQASTID Q  TLKRMFQ IA+MFGPLCNGFDWNVELKCII EKELSDNWG
Sbjct: 2   MAEKMPERNIQASTIDCQTKTLKRMFQDIAEMFGPLCNGFDWNVELKCIIVEKELSDNWG 61

Query: 61  LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDMEILMMYSQR 120
           LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVF GYEGFFTDDRNDMEILMMYSQR
Sbjct: 62  LLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFEGYEGFFTDDRNDMEILMMYSQR 121

Query: 121 LGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
           LGMSPDDIMGTR DNSSDGRISSSESKRKQEAKR
Sbjct: 122 LGMSPDDIMGTRSDNSSDGRISSSESKRKQEAKR 155

BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CHG6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001380 PE=4 SV=1)

HSP 1 Score: 161 bits (407), Expect = 2.87e-46
Identity = 83/157 (52.87%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
           M  K+P  N+ AS ID +I  LKRMF A+A+M GP C GF WN E KCI+AEKE+ D+W 
Sbjct: 52  MTFKIPSSNVHASMIDSRIKLLKRMFHALAEMRGPTCIGFGWNDEQKCIVAEKEVFDDWV 111

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
                  GLLNK FPHYD+L Y+FGKDR +    +TFTN G N   GYE F  D  +D +
Sbjct: 112 KSHPVAKGLLNKLFPHYDELLYVFGKDRVMEGRTETFTNVGSNDLAGYEAFVADATSDTD 171

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
             +MYSQ L MS D++M TR    S+GR  SS SKRK
Sbjct: 172 FQLMYSQGLNMSLDELMETRTPRVSEGRYVSSGSKRK 208

BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UIE9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001660 PE=4 SV=1)

HSP 1 Score: 159 bits (402), Expect = 1.62e-45
Identity = 85/157 (54.14%), Postives = 101/157 (64.33%), Query Frame = 0

Query: 1   MAEKMPERNIQASTIDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW- 60
           MA K+P  N+ ASTID +I  LKRMF AIA+M GP C+GF WN E KCI+AEKE+ DNW 
Sbjct: 52  MAFKIPGSNVHASTIDSRIKLLKRMFHAIAEMRGPTCSGFGWNDEQKCIVAEKEVFDNWV 111

Query: 61  -------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDME 120
                  GLL K F HYD+L Y+FGKDRA    A++F + G N   GYE F  +   D  
Sbjct: 112 KSHLAAKGLLTKLFLHYDELSYVFGKDRATGGWAESFADVGSNNLAGYEPFIANATPDTN 171

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRK 149
              MYSQ L MSPD++MGTR    S+GR  SS SKRK
Sbjct: 172 FQPMYSQELNMSPDELMGTRNARVSEGRYVSSGSKRK 208

BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SS54 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00600 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.95e-45
Identity = 86/162 (53.09%), Postives = 113/162 (69.75%), Query Frame = 0

Query: 1   MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
           MAEK+P   ++A+T ID +I TLKR FQAIA+M GP C+GF WN E KCI+AEKEL DNW
Sbjct: 2   MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMQGPACSGFGWNDEEKCIVAEKELFDNW 61

Query: 61  ------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNV-FGGYEGFFTDDRNDME 120
                 GLLNKSFP+YD+L Y+FG+DRA    A+TF + G N   GGY+ F   D N+ +
Sbjct: 62  SHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-D 121

Query: 121 ILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
              +YSQ + +S DD+  +RP  +S+GR  SS SKRK+E++R
Sbjct: 122 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRESQR 162

BLAST of MELO3C012830.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D2M5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003170 PE=4 SV=1)

HSP 1 Score: 157 bits (396), Expect = 4.44e-45
Identity = 85/163 (52.15%), Postives = 112/163 (68.71%), Query Frame = 0

Query: 1   MAEKMPERNIQAST-IDFQINTLKRMFQAIAKMFGPLCNGFDWNVELKCIIAEKELSDNW 60
           MA+K+P   ++A+T ID +I TLKR FQAIAKM GP C+GF+WN E K IIAEKEL DNW
Sbjct: 28  MAKKLPRCQVRATTVIDCRIKTLKRTFQAIAKMRGPACSGFEWNDEEKFIIAEKELFDNW 87

Query: 61  --------GLLNKSFPHYDDLCYIFGKDRAIVEHAKTFTNAGLNVFGGYEGFFTDDRNDM 120
                   GLLNK FP+YD+L Y+FG+DRA    A+TF + G N  GGY+ F   D N+ 
Sbjct: 88  VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFVDVGSNESGGYDRFDMGDENE- 147

Query: 121 EILMMYSQRLGMSPDDIMGTRPDNSSDGRISSSESKRKQEAKR 154
           +   +YSQ + +S DD+  +RP  +S+GRI SS SKRK+ ++R
Sbjct: 148 KFPPVYSQGIDLSQDDVRASRPSRASEGRIGSSGSKRKRGSQR 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037928.13.00e-10194.81retrotransposon protein [Cucumis melo var. makuwa] >TYK19005.1 retrotransposon p... [more]
KAA0037854.15.93e-4652.87retrotransposon protein [Cucumis melo var. makuwa] >TYK09826.1 retrotransposon p... [more]
KAA0054347.13.35e-4554.14retrotransposon protein [Cucumis melo var. makuwa] >TYK12384.1 retrotransposon p... [more]
KAA0033263.14.02e-4553.09retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0042063.19.18e-4552.15retrotransposon protein [Cucumis melo var. makuwa] >TYK18005.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D6471.45e-10194.81Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CHG62.87e-4652.87Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UIE91.62e-4554.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SS541.95e-4553.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D2M54.44e-4552.15Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..154
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012830.jh1.t1MELO3C012830.jh1.t1mRNA