MELO3C012549.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012549.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr01: 19024653 .. 19024928 (+)
RNA-Seq ExpressionMELO3C012549.jh1
SyntenyMELO3C012549.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTCGTCGGCGCTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGTGGTCGTCGGCTGTAAGGTCGTCAGCTATAAGGTCATCGACTGTGAGGTTGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATTGATGAATTATACCGCTCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTGTCGTCGTCTGA

mRNA sequence

ATGAGGGTCGTCGGCGCTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGTGGTCGTCGGCTGTAAGGTCGTCAGCTATAAGGTCATCGACTGTGAGGTTGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATTGATGAATTATACCGCTCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTGTCGTCGTCTGA

Coding sequence (CDS)

ATGAGGGTCGTCGGCGCTGTGAGGTCATCAGCTGTGAAGTCGTCGGCTGTGAGGTCGTCGGTTGTGAGGTCGTCGGTTGTGTGGTCGTCGGCTGTAAGGTCGTCAGCTATAAGGTCATCGACTGTGAGGTTGTCGGCTGTAACGATTGGAACGAAGAAAATAGATGAGATTGATGAATTATACCGCTCGACAAAGCTGGAGATTAGGACAGATAAGATCGATGATGCGTCGCGCGACGGAGTTGGAGAACAAATGAGATCGTTTGTCGTCGTCTGA

Protein sequence

MRVVGAVRSSAVKSSAVRSSVVRSSVVWSSAVRSSAIRSSTVRLSAVTIGTKKIDEIDELYRSTKLEIRTDKIDDASRDGVGEQMRSFVVV
Homology
[Close]
BLAST of MELO3C012549.jh1 vs. NCBI nr
Match: TYK22666.1 (putative dynein heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 4.64e-40
Identity = 84/96 (87.50%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 1  MRVVGAVRSSAVKSSAVRSSVVRSSVV-----WSSAVRSSAIRSSTVRLSAVTIGTKKID 60
          MRVVG VRSS VKSSAVRSSVVRSSVV     WSSAVRSSAIRSSTVR S VTIGTKKID
Sbjct: 2  MRVVGTVRSSVVKSSAVRSSVVRSSVVRSLVVWSSAVRSSAIRSSTVRSSTVTIGTKKID 61

Query: 61 EIDELYRSTKLEIRTDKIDDASRDGVGEQMRSFVVV 91
          EIDELYR TK+EIRTDKIDDAS DGVGEQMRSFVVV
Sbjct: 62 EIDELYRPTKMEIRTDKIDDASCDGVGEQMRSFVVV 97

[Close]
BLAST of MELO3C012549.jh1 vs. NCBI nr
Match: KAA0036557.1 (putative dynein heavy chain [Cucumis melo var. makuwa])

HSP 1 Score: 136 bits (342), Expect = 2.13e-39
Identity = 84/96 (87.50%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1   MRVVGAVRSSAVKSSAVRSSVVRSSVV-----WSSAVRSSAIRSSTVRLSAVTIGTKKID 60
           MRVVG VRSSAVKSSAVRSSVVRSSVV     WS AVRSSAIRS TVR SAVTIGTKKID
Sbjct: 6   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 65

Query: 61  EIDELYRSTKLEIRTDKIDDASRDGVGEQMRSFVVV 91
           EIDELY  TKLEIRTDKIDDASRDGVGEQMRSF VV
Sbjct: 66  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 101

[Close]
BLAST of MELO3C012549.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DGD7 (Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G001110 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 2.25e-40
Identity = 84/96 (87.50%), Postives = 85/96 (88.54%), Query Frame = 0 

Query: 1  MRVVGAVRSSAVKSSAVRSSVVRSSVV-----WSSAVRSSAIRSSTVRLSAVTIGTKKID 60
          MRVVG VRSS VKSSAVRSSVVRSSVV     WSSAVRSSAIRSSTVR S VTIGTKKID
Sbjct: 2  MRVVGTVRSSVVKSSAVRSSVVRSSVVRSLVVWSSAVRSSAIRSSTVRSSTVTIGTKKID 61

Query: 61 EIDELYRSTKLEIRTDKIDDASRDGVGEQMRSFVVV 91
          EIDELYR TK+EIRTDKIDDAS DGVGEQMRSFVVV
Sbjct: 62 EIDELYRPTKMEIRTDKIDDASCDGVGEQMRSFVVV 97

[Close]
BLAST of MELO3C012549.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T4R1 (Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G00610 PE=4 SV=1)

HSP 1 Score: 136 bits (342), Expect = 1.03e-39
Identity = 84/96 (87.50%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1   MRVVGAVRSSAVKSSAVRSSVVRSSVV-----WSSAVRSSAIRSSTVRLSAVTIGTKKID 60
           MRVVG VRSSAVKSSAVRSSVVRSSVV     WS AVRSSAIRS TVR SAVTIGTKKID
Sbjct: 6   MRVVGTVRSSAVKSSAVRSSVVRSSVVRSMVVWSLAVRSSAIRSLTVRSSAVTIGTKKID 65

Query: 61  EIDELYRSTKLEIRTDKIDDASRDGVGEQMRSFVVV 91
           EIDELY  TKLEIRTDKIDDASRDGVGEQMRSF VV
Sbjct: 66  EIDELYHPTKLEIRTDKIDDASRDGVGEQMRSFFVV 101

The following BLAST results are available for this feature:
BLAST of MELO3C012549.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK22666.14.64e-4087.50putative dynein heavy chain [Cucumis melo var. makuwa][more]
KAA0036557.12.13e-3987.50putative dynein heavy chain [Cucumis melo var. makuwa][more]
BLAST of MELO3C012549.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C012549.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DGD72.25e-4087.50Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7T4R11.03e-3987.50Putative dynein heavy chain OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of MELO3C012549.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012549.jh1.t1MELO3C012549.jh1.t1mRNA