MELO3C012519.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012519.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Locationchr01: 18358199 .. 18358468 (+)
RNA-Seq ExpressionMELO3C012519.jh1
SyntenyMELO3C012519.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACTTGTTGATGTGACTTACCAGGTTGATTACTCAGATTGGTTACTTATTCTATCTTTCAAGAATTTTCATAGGAAAGCTGAATTGCAAGGAATGTATGCAAGACAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACAAACACAATGACACCTTATGTGGGGCATGCGATGAGAATTATGCTTTAGATGAATTTTGGATTTGTTGTGATATCTGTGAGAAATGGTTCCATGGAAAATTTGTTGTATGA

mRNA sequence

ATGGCACTTGTTGATGTGACTTACCAGGTTGATTACTCAGATTGGTTACTTATTCTATCTTTCAAGAATTTTCATAGGAAAGCTGAATTGCAAGGAATGTATGCAAGACAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACAAACACAATGACACCTTATGTGGGGCATGCGATGAGAATTATGCTTTAGATGAATTTTGGATTTGTTGTGATATCTGTGAGAAATGGTTCCATGGAAAATTTGTTGTATGA

Coding sequence (CDS)

ATGGCACTTGTTGATGTGACTTACCAGGTTGATTACTCAGATTGGTTACTTATTCTATCTTTCAAGAATTTTCATAGGAAAGCTGAATTGCAAGGAATGTATGCAAGACAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACAAACACAATGACACCTTATGTGGGGCATGCGATGAGAATTATGCTTTAGATGAATTTTGGATTTGTTGTGATATCTGTGAGAAATGGTTCCATGGAAAATTTGTTGTATGA

Protein sequence

MALVDVTYQVDYSDWLLILSFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFVV
Homology
BLAST of MELO3C012519.jh1 vs. NCBI nr
Match: KAA0036625.1 (PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa] >TYK03364.1 PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 8.38e-60
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1   MALVDVTYQVDYSDWLLILSFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLC 60
           MALVDV YQVDYSDWLLILSFKNFHRKAELQGMYAR+SQAREEVETLYEEDEDKHNDTLC
Sbjct: 18  MALVDVIYQVDYSDWLLILSFKNFHRKAELQGMYARRSQAREEVETLYEEDEDKHNDTLC 77

Query: 61  GACDENYALDEFWICCDICEKWFHGKFVV 89
           GACDENYALDEFWICCDICEKWFHGKFVV
Sbjct: 78  GACDENYALDEFWICCDICEKWFHGKFVV 106

BLAST of MELO3C012519.jh1 vs. NCBI nr
Match: XP_008462330.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 128 bits (322), Expect = 1.61e-34
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 20  SFK-NFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDI 79
           SFK NF R+A+ QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDI
Sbjct: 160 SFKSNFQREADAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDI 219

Query: 80  CEKWFHGKFV 88
           CEKWFHGK V
Sbjct: 220 CEKWFHGKCV 229

BLAST of MELO3C012519.jh1 vs. NCBI nr
Match: XP_004141692.1 (PHD finger protein ALFIN-LIKE 3 [Cucumis sativus] >KGN45504.1 hypothetical protein Csa_016627 [Cucumis sativus])

HSP 1 Score: 126 bits (316), Expect = 1.19e-33
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK+  R+AE+QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 160 SFKS--REAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 219

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 220 EKWFHGKCV 226

BLAST of MELO3C012519.jh1 vs. NCBI nr
Match: XP_038897957.1 (PHD finger protein ALFIN-LIKE 3-like [Benincasa hispida] >XP_038897958.1 PHD finger protein ALFIN-LIKE 3-like [Benincasa hispida])

HSP 1 Score: 124 bits (310), Expect = 9.24e-33
Identity = 58/69 (84.06%), Postives = 61/69 (88.41%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK   R+AE+QGMYARQ QAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 159 SFKT--REAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 218

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 219 EKWFHGKCV 225

BLAST of MELO3C012519.jh1 vs. NCBI nr
Match: XP_008462331.1 (PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo] >KAA0059412.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa] >TYK03915.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (310), Expect = 9.47e-33
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK+  R+A+ QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 160 SFKS--READAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 219

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 220 EKWFHGKCV 226

BLAST of MELO3C012519.jh1 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.4e-16
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           S K  H K E +G+   + +  E      +EDED+H +TLCGAC +NYA DEFWICCD+C
Sbjct: 173 SSKTIHAKDEEEGLELEEGEEEE------DEDEDEHGETLCGACGDNYASDEFWICCDMC 232

Query: 80  EKWFHGKFV 89
           EKWFHG+ V
Sbjct: 233 EKWFHGECV 235

BLAST of MELO3C012519.jh1 vs. ExPASy Swiss-Prot
Match: Q9M2B4 (PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.3e-15
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 31  QGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           +G  ++  Q +EE E + E+DED H +TLCGAC ++   DEFWICCD+CEKWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

BLAST of MELO3C012519.jh1 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-14
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 44  VETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           +E  YE+++D+H DTLCG+C  NY  DEFWICCD+CE+W+HGK V
Sbjct: 172 MEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO3C012519.jh1 vs. ExPASy Swiss-Prot
Match: O81488 (PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-14
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 42  EEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           EE E + EEDED+  +T CGAC E+YA DEFWICCD+CE WFHGK V
Sbjct: 184 EEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

BLAST of MELO3C012519.jh1 vs. ExPASy Swiss-Prot
Match: B8B8C5 (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.6e-13
Identity = 28/37 (75.68%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 52  EDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           E++H +TLCGAC E+Y  DEFWICCDICEKWFHGK V
Sbjct: 203 EEEHGETLCGACGESYGADEFWICCDICEKWFHGKCV 239

BLAST of MELO3C012519.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BW61 (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00260 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 4.06e-60
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0

Query: 1   MALVDVTYQVDYSDWLLILSFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLC 60
           MALVDV YQVDYSDWLLILSFKNFHRKAELQGMYAR+SQAREEVETLYEEDEDKHNDTLC
Sbjct: 18  MALVDVIYQVDYSDWLLILSFKNFHRKAELQGMYARRSQAREEVETLYEEDEDKHNDTLC 77

Query: 61  GACDENYALDEFWICCDICEKWFHGKFVV 89
           GACDENYALDEFWICCDICEKWFHGKFVV
Sbjct: 78  GACDENYALDEFWICCDICEKWFHGKFVV 106

BLAST of MELO3C012519.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CI87 (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=3 SV=1)

HSP 1 Score: 128 bits (322), Expect = 7.79e-35
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0

Query: 20  SFK-NFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDI 79
           SFK NF R+A+ QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDI
Sbjct: 160 SFKSNFQREADAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDI 219

Query: 80  CEKWFHGKFV 88
           CEKWFHGK V
Sbjct: 220 CEKWFHGKCV 229

BLAST of MELO3C012519.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K9L1 (PHD-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE=3 SV=1)

HSP 1 Score: 126 bits (316), Expect = 5.76e-34
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK+  R+AE+QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 160 SFKS--REAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 219

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 220 EKWFHGKCV 226

BLAST of MELO3C012519.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BXQ0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001120 PE=3 SV=1)

HSP 1 Score: 124 bits (310), Expect = 4.58e-33
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK+  R+A+ QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 160 SFKS--READAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 219

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 220 EKWFHGKCV 226

BLAST of MELO3C012519.jh1 vs. ExPASy TrEMBL
Match: A0A1S3CGR0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500707 PE=3 SV=1)

HSP 1 Score: 124 bits (310), Expect = 4.58e-33
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           SFK+  R+A+ QGMYARQSQAREEVETLYEEDED+H DTLCGAC ENYA DEFWICCDIC
Sbjct: 160 SFKS--READAQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDIC 219

Query: 80  EKWFHGKFV 88
           EKWFHGK V
Sbjct: 220 EKWFHGKCV 226

BLAST of MELO3C012519.jh1 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 84.3 bits (207), Expect = 5.2e-17
Identity = 37/69 (53.62%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 20  SFKNFHRKAELQGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDIC 79
           S K  H K E +G+   + +  E      +EDED+H +TLCGAC +NYA DEFWICCD+C
Sbjct: 173 SSKTIHAKDEEEGLELEEGEEEE------DEDEDEHGETLCGACGDNYASDEFWICCDMC 232

Query: 80  EKWFHGKFV 89
           EKWFHG+ V
Sbjct: 233 EKWFHGECV 235

BLAST of MELO3C012519.jh1 vs. TAIR 10
Match: AT3G42790.1 (alfin-like 3 )

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-16
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 31  QGMYARQSQAREEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           +G  ++  Q +EE E + E+DED H +TLCGAC ++   DEFWICCD+CEKWFHGK V
Sbjct: 168 EGKSSKTKQPKEEDEEIDEDDEDDHGETLCGACGDSDGADEFWICCDLCEKWFHGKCV 225

BLAST of MELO3C012519.jh1 vs. TAIR 10
Match: AT5G26210.1 (alfin-like 4 )

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-15
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 42  EEVETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           EE E + EEDED+  +T CGAC E+YA DEFWICCD+CE WFHGK V
Sbjct: 184 EEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCV 230

BLAST of MELO3C012519.jh1 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-15
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 44  VETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           +E  YE+++D+H DTLCG+C  NY  DEFWICCD+CE+W+HGK V
Sbjct: 172 MEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO3C012519.jh1 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-15
Identity = 28/45 (62.22%), Postives = 37/45 (82.22%), Query Frame = 0

Query: 44  VETLYEEDEDKHNDTLCGACDENYALDEFWICCDICEKWFHGKFV 89
           +E  YE+++D+H DTLCG+C  NY  DEFWICCD+CE+W+HGK V
Sbjct: 172 MEESYEDEDDEHGDTLCGSCGGNYTNDEFWICCDVCERWYHGKCV 216

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0036625.18.38e-6097.75PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa] >TYK0... [more]
XP_008462330.11.61e-3485.71PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo][more]
XP_004141692.11.19e-3385.51PHD finger protein ALFIN-LIKE 3 [Cucumis sativus] >KGN45504.1 hypothetical prote... [more]
XP_038897957.19.24e-3384.06PHD finger protein ALFIN-LIKE 3-like [Benincasa hispida] >XP_038897958.1 PHD fin... [more]
XP_008462331.19.47e-3384.06PREDICTED: PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo] >KAA00... [more]
Match NameE-valueIdentityDescription
Q5XEM97.4e-1653.62PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1[more]
Q9M2B46.3e-1556.90PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana OX=3702 GN=AL3 PE=1 SV=1[more]
Q9FFF59.0e-1462.22PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1[more]
O814889.0e-1468.09PHD finger protein ALFIN-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=AL4 PE=1 SV=2[more]
B8B8C57.6e-1375.68PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26... [more]
Match NameE-valueIdentityDescription
A0A5D3BW614.06e-6097.75PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3CI877.79e-3585.71PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0K9L15.76e-3485.51PHD-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G450620 PE... [more]
A0A5D3BXQ04.58e-3384.06PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A1S3CGR04.58e-3384.06PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT5G20510.15.2e-1753.62alfin-like 5 [more]
AT3G42790.14.4e-1656.90alfin-like 3 [more]
AT5G26210.16.4e-1568.09alfin-like 4 [more]
AT5G05610.16.4e-1562.22alfin-like 1 [more]
AT5G05610.26.4e-1562.22alfin-like 1 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 49..89
e-value: 3.5E-13
score: 50.8
NoneNo IPR availablePANTHERPTHR12321:SF141PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1coord: 24..88
IPR045104AlfinPANTHERPTHR12321CPG BINDING PROTEINcoord: 24..88
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 49..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012519.jh1.t1MELO3C012519.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0042393 histone binding