MELO3C012500 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012500
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein RADIALIS-like 1
Location	chr01: 17489017 .. 17490802 (-)
RNA-Seq Expression	MELO3C012500
Synteny	MELO3C012500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACGGTGGGATTGTGGCAACCTAATCGAATAAATTTTTTCCCCATCAACCCTTTGCTTCCTACTTATAAAGAGCACCCATTGCTCATTCTCTGGCACACACATTATCGTTTGTTTCCCACAGCAAACTTTTGAATCCCTCTTTCAAACCATTTTTTTTTTTCACTTCTTCAAAACAATTGAAGCTTCTCTTTATTTATCATCAATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGGTAATGCATAAGCCTTTCGTGTTAGTTGGTGATTTAATACACGGTATTAGAGTATGACGGTTTGTTTCAAAAATGTTAGTTTTTGTTCACCTTATTTGATCATCTACTATGTTTTGAAGCCTATAAGTGAAACGAGAATGTTAATTAATATATCGATATATAGCTAAATTTAGTATAACTTCTAAGCGTGGGAGATTTTAGGTTTGATTATTTGTTTAGACGATGACAAAATTAAACGGTATATACATTAAAAAAAGATTAATGATGACAATATATATTAGACAAATGAGATTATTTCATTTCAAGATTAAACTATTCGACCTTATTAGAAGTATGACTAATATATCTTCTAAAATTGTAAGGCTTTTCCATTATTATAATGTGGAGATTTTATTCACTCTCAGTATTCTATCTTTGAATTCACGATATATTCTTGTGTTGGAACTCAATTTTTGTTTGGAATCTAATAATGATTTGGTTTTCATAGACTTTGATACTTATTTAAAAAAACAGTTCTTGGATTAAATCATTATCTTTATAGTAACTAATACAATATAGTATTATTGTATAAAGTCATCTTATATTTAATGAAATAAATGATTCGAAACGTATATTTTTGTTAATAATTAGTCCTGTTTTCAACTGATATAGTTGAATTCAAACAAAGTACCCAAATGATTTTTTATGAAAAAGAAAAGAAAAAAAACAAACCCTCCCCCCTAACCCATTGGGTTTTGAATGATGTCTTGGCTCTCTTGCAAAAGCTATGTCTTTATACAATTTGTATGTATATGAGCAGAGGAAATGTCAATATCAATAAATAGTAGCCCCCCATTTGGCATGGCTTCTTCTCTGAATTTATGGTTGCATGTCTCAATAAAAATACAATATAATAACTCTTGATCTTGTAAGCTTTTTGAAAGGCCCCCTCTCTCTTCTTGTTCTTTGAAACTAAAGCTGCACCAATCCCTTAGCATTGCCTCTTCACAACCCCAATAAAAACAACATTTATATATATTAGGAATACTATAATAATAATATATCGTTTATAGAAATTAACATCTTGTTGTGTTGTTATTATTATCATTATGTTTTTGACTTTTTTTTTTTTTTTTGATTCTTAGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTATTATTGTGCATCGACCTCTGAT

mRNA sequence

AACGGTGGGATTGTGGCAACCTAATCGAATAAATTTTTTCCCCATCAACCCTTTGCTTCCTACTTATAAAGAGCACCCATTGCTCATTCTCTGGCACACACATTATCGTTTGTTTCCCACAGCAAACTTTTGAATCCCTCTTTCAAACCATTTTTTTTTTTCACTTCTTCAAAACAATTGAAGCTTCTCTTTATTTATCATCAATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGACGATGACAAAATTAAACGGATGAGGAACATGAAGTTCCACCATGAGATTTGATGGTGAGAAGTAATGGAAGAATAAAGGAGGAAAGAAGAATGAATCTTTTGCTCTAACTTATATATAAAATATGATATATTTCTTGTGTTTTGTTTTTTCAATGATATCTAATATTATTGATTTGTGTTAAGCTTTTAAGTTATTGGTTAATTCCATGTATTATTGTGCATCGACCTCTGAT

Coding sequence (CDS)

ATGGCTTCGATGTCTTCTCATGGATCTGGTACATGGACTGTAAAGCAAAACAAGGCCTTTGAGAAGGCATTGGCAGTTTATGATCAAGACACACCTGATCGATGGCTAAATGTTGCAAAAGCTGTGGGTGGAAAAACTGCTGAAGAAGTCAAGAGGCATTACGCACTTCTTGTCGAGGATGTTAAGTTTATTGAGTCTGGCCAAGTTCCTTTCCCTTATCGAACCTCCGGAGATGGTAACCAAGACGATGACAAAATTAAACGGATGAGGAACATGAAGTTCCACCATGAGATTTGA

Protein sequence

MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKFIESGQVPFPYRTSGDGNQDDDKIKRMRNMKFHHEI

Homology

[Close]

BLAST of MELO3C012500 vs. NCBI nr
Match: KAA0036150.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSGDGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of MELO3C012500 vs. NCBI nr
Match: XP_008447024.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSGDGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of MELO3C012500 vs. NCBI nr
Match: KAE8645641.1 (hypothetical protein Csa_020418 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 2.1e-37
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQDDDKI 87
          VKFIESGQVPFPYRTSG GNQ++  I
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQEEMSI 86

[Close]

BLAST of MELO3C012500 vs. NCBI nr
Match: XP_004151125.2 (protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 6.2e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of MELO3C012500 vs. NCBI nr
Match: XP_022136064.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 160.6 bits (405), Expect = 6.8e-36
Identity = 81/98 (82.65%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH 96
          VKFIESGQV FPYRTSG    GN   D  KRMRNMK +
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMTTDDEKRMRNMKLN 98

[Close]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 8.4e-29
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK 94
           IE+G VPFP Y+ T+G+ N+    D+ KRMR+MK
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMK 99

[Close]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-28
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK 94
            IE+G VPFP YRTSG   +G    ++ KRMRNM+
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLSQEE-KRMRNMR 98

[Close]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.8e-27
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 5  SSHGSG-TWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVKF 64
          S+ GSG  W+ K+NKAFE+ALAVYD+DTPDRW NVA+AV G+T EEVK+HY +LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGQVPFP-YRTSGDGNQDDDKIKRMRNMK 94
          IESG+VPFP YRT+G GN   D+ KR RN+K
Sbjct: 63 IESGKVPFPNYRTTG-GNMKTDE-KRFRNLK 91

[Close]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-23
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK 94
          +  IE   VP P Y+T   G++    DD  ++ M+NM+
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMR 98

[Close]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-23
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK 94
          +  IE+G+VP P Y+T  S   + +D   ++M+N+K
Sbjct: 61 LINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLK 96

[Close]

BLAST of MELO3C012500 vs. ExPASy TrEMBL
Match: A0A5A7SYK4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1323G00110 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.3e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSGDGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of MELO3C012500 vs. ExPASy TrEMBL
Match: A0A1S3BFW6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 9.3e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSGDGNQ
Sbjct: 61 VKFIESGQVPFPYRTSGDGNQ 81

[Close]

BLAST of MELO3C012500 vs. ExPASy TrEMBL
Match: A0A0A0K348 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.0e-37
Identity = 79/81 (97.53%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGSGTWTV QNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED
Sbjct: 1  MASMSSHGSGTWTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60

Query: 61 VKFIESGQVPFPYRTSGDGNQ 82
          VKFIESGQVPFPYRTSG GNQ
Sbjct: 61 VKFIESGQVPFPYRTSGGGNQ 81

[Close]

BLAST of MELO3C012500 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.3e-36
Identity = 81/98 (82.65%), Postives = 83/98 (84.69%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MASMSSHGS  WT KQNKAFEKALAVYDQDTP+RWLNVAKAVGGKTAEEVKRHY LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKFIESGQVPFPYRTSG---DGNQDDDKIKRMRNMKFH 96
          VKFIESGQV FPYRTSG    GN   D  KRMRNMK +
Sbjct: 61 VKFIESGQVSFPYRTSGGGSHGNMTTDDEKRMRNMKLN 98

[Close]

BLAST of MELO3C012500 vs. ExPASy TrEMBL
Match: A0A6J1GJE9 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 75/82 (91.46%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MASMSSHGS-GTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60
          MASMSSHGS GTWTVKQNKAFE+ALAVYDQDTPDRWLNVAKAV GKT EEV+RHYALLVE
Sbjct: 1  MASMSSHGSAGTWTVKQNKAFEQALAVYDQDTPDRWLNVAKAVPGKTVEEVERHYALLVE 60

Query: 61 DVKFIESGQVPFPYRTSGDGNQ 82
          DVKFIESGQVPFPYRTSG G Q
Sbjct: 61 DVKFIESGQVPFPYRTSGGGTQ 82

[Close]

BLAST of MELO3C012500 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 127.5 bits (319), Expect = 6.0e-30
Identity = 66/95 (69.47%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 3  SMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDVK 62
          SMSS+GSG+WTVKQNKAFE+ALAVYDQDTPDRW NVA+AVGGKT EE KR Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 FIESGQVPFP-YR-TSGDGNQD--DDKIKRMRNMK 94
           IE+G VPFP Y+ T+G+ N+    D+ KRMR+MK
Sbjct: 65 SIENGHVPFPDYKTTTGNSNRGRLRDEEKRMRSMK 99

[Close]

BLAST of MELO3C012500 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 127.1 bits (318), Expect = 7.8e-30
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 0


Query: 2  ASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVEDV 61
          +SMSS  SG+WT KQNKAFE+ALA YDQDTP+RW NVAK VGGKT EEVKRHY LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KFIESGQVPFP-YRTSG---DGNQDDDKIKRMRNMK 94
            IE+G VPFP YRTSG   +G    ++ KRMRNM+
Sbjct: 64 NSIENGHVPFPNYRTSGGCTNGRLSQEE-KRMRNMR 98

[Close]

BLAST of MELO3C012500 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 110.5 bits (275), Expect = 7.5e-25
Identity = 58/98 (59.18%), Postives = 71/98 (72.45%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S   S +WT KQNK FE+ALAVYD+DTPDRW NVAKAVG K+AEEVKRHY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRTSGDGNQ----DDDKIKRMRNMK 94
          +  IE   VP P Y+T   G++    DD  ++ M+NM+
Sbjct: 61 LMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMR 98

[Close]

BLAST of MELO3C012500 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.4 bits (272), Expect = 1.7e-24
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT--SGDGNQDDDKIKRMRNMK 94
          +  IE+G+VP P Y+T  S   + +D   ++M+N+K
Sbjct: 61 LINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLK 96

[Close]

BLAST of MELO3C012500 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-23
Identity = 52/76 (68.42%), Postives = 59/76 (77.63%), Query Frame = 0


Query: 1  MASMSSHGSGTWTVKQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTPDRW NVAKAVGGKT EEVKRHY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 VKFIESGQVPFP-YRT 76
          +  IE+G+VP P Y+T
Sbjct: 61 LINIETGRVPLPNYKT 76

The following BLAST results are available for this feature:

BLAST of MELO3C012500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036150.1	1.9e-38	100.00	protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK01768.1 protein RADIALIS-...	[more]
XP_008447024.1	1.9e-38	100.00	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
KAE8645641.1	2.1e-37	93.02	hypothetical protein Csa_020418 [Cucumis sativus]	[more]
XP_004151125.2	6.2e-37	97.53	protein RADIALIS-like 1 [Cucumis sativus]	[more]
XP_022136064.1	6.8e-36	82.65	protein RADIALIS-like 1 [Momordica charantia]	[more]

BLAST of MELO3C012500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	8.4e-29	69.47	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	1.1e-28	67.71	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	7.8e-27	67.03	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q8GW75	1.1e-23	59.18	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q1A173	2.4e-23	59.38	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of MELO3C012500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYK4	9.3e-39	100.00	Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFW6	9.3e-39	100.00	protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489573 PE=4 SV=1	[more]
A0A0A0K348	3.0e-37	97.53	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G170600 PE=4 S...	[more]
A0A6J1C385	3.3e-36	82.65	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]
A0A6J1GJE9	1.5e-33	91.46	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454834 PE=4 SV=1	[more]

BLAST of MELO3C012500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	6.0e-30	69.47	Homeodomain-like superfamily protein	[more]
AT4G39250.1	7.8e-30	67.71	RAD-like 1	[more]
AT1G19510.1	7.5e-25	59.18	RAD-like 5	[more]
AT1G75250.2	1.7e-24	59.38	RAD-like 6	[more]
AT1G75250.1	3.2e-23	68.42	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 5.3E-7 score: 39.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 4..58 score: 6.005018
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..54 e-value: 2.68777E-6 score: 39.0958
None	No IPR available	GENE3D	1.10.10.60		coord: 3..71 e-value: 6.2E-23 score: 82.3
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..93
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..93
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012500.1	MELO3C012500.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity