MELO3C010513 (gene) Melon (DHL92) v4

Overview


Name	MELO3C010513
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr07: 7710187 .. 7710504 (+)
RNA-Seq Expression	MELO3C010513
Synteny	MELO3C010513

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

mRNA sequence

ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

Coding sequence (CDS)

ATGCAGACACGTCATACAGCGAAGGGGCTCCTTAACAAACTGTTTCCCTATTACGACGAATTTGCATATGTGTTCGAGAGGGATAGGACGACGGGTCACTTTACAAAGACGTTCGTCGATGTTGGGTCTAATGATCCTAGCGGGTACGAGGGGTTTCAAATGCCTGATGGAAATGATATGGAATTTCTCAGCATGTATAACCAAGGGTTTGACATGTCTCAGGATGATGTACGTGCTTTACTCCCTGCTCACACGTTAGAGGGTCGGGCCAGATCGAGTGAATCAAAACGACAGAGAAGGAGGGCAGCAGGTGGGTGA

Protein sequence

MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG

Homology

[Close]

BLAST of MELO3C010513 vs. NCBI nr
Match: KAA0052215.1 (transposase [Cucumis melo var. makuwa] >TYK01782.1 transposase [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 3   TRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF 62
           T  +AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF
Sbjct: 30  TFRSAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF 89

Query: 63  LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG 106
           LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG
Sbjct: 90  LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG 132

[Close]

BLAST of MELO3C010513 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 5.1e-29
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           MQT   AKGLLNK F YYDE AYVF RDR  GHF +TF+DVGSNDPS YEGFQ  DGND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF SMY+QGFDMSQDDVRA  PA T E R  S+ SK++R
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRR 184

[Close]

BLAST of MELO3C010513 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 4.3e-28
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           +++   AK LLNKLF YYDE AYVFE DR TG F +TF D+GSN+P+GYEGF M DGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF  MY+QG D+SQDDVR   PA T +GR RSSESKR+R
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKR 276

[Close]

BLAST of MELO3C010513 vs. NCBI nr
Match: TYK20513.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           +++    K L NKLFPYYDE AYVF+ D+TTG F KTFVDVGSN+P+ Y+GF M DGN+ 
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE- 126

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EFLS+YNQG DMSQ DVRAL PAHT +GR   S SKR+R
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKR 164

[Close]

BLAST of MELO3C010513 vs. NCBI nr
Match: KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-27
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           MQ+  TAKGLLNK FPYYDE AY+F+RDRTT  F +TF D+GSN+P  YEGF M DGN+ 
Sbjct: 1   MQSHPTAKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE- 60

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF S+Y+QG DMSQ+DV A  PAHT   RARSS  KR+R
Sbjct: 61  EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKR 98

[Close]

BLAST of MELO3C010513 vs. ExPASy TrEMBL
Match: A0A5A7UET5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00100 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 4.8e-49
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 3   TRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF 62
           T  +AKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF
Sbjct: 30  TFRSAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDMEF 89

Query: 63  LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG 106
           LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG
Sbjct: 90  LSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQRRRAAGG 132

[Close]

BLAST of MELO3C010513 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 70/99 (70.71%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           MQT   AKGLLNK F YYDE AYVF RDR  GHF +TF+DVGSNDPS YEGFQ  DGND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF SMY+QGFDMSQDDVRA  PA T E R  S+ SK++R
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRR 184

[Close]

BLAST of MELO3C010513 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-28
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           +++   AK LLNKLF YYDE AYVFE DR TG F +TF D+GSN+P+GYEGF M DGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF  MY+QG D+SQDDVR   PA T +GR RSSESKR+R
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKR 276

[Close]

BLAST of MELO3C010513 vs. ExPASy TrEMBL
Match: A0A5D3DAC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00880 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 65/99 (65.66%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           +++    K L NKLFPYYDE AYVF+ D+TTG F KTFVDVGSN+P+ Y+GF M DGN+ 
Sbjct: 67  VRSHPATKRLFNKLFPYYDELAYVFDHDKTTGRFVKTFVDVGSNEPTEYKGFDMSDGNE- 126

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EFLS+YNQG DMSQ DVRAL PAHT +GR   S SKR+R
Sbjct: 127 EFLSLYNQGTDMSQKDVRALRPAHTSDGRVGLSRSKRKR 164

[Close]

BLAST of MELO3C010513 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 1   MQTRHTAKGLLNKLFPYYDEFAYVFERDRTTGHFTKTFVDVGSNDPSGYEGFQMPDGNDM 60
           MQ+  TAKGLLNK FPYYDE AY+F+RDRTT  F +TF D+GSN+P  YEGF M DGN+ 
Sbjct: 1   MQSHPTAKGLLNKSFPYYDELAYMFDRDRTTDRFIETFTDIGSNEPIRYEGFNMSDGNE- 60

Query: 61  EFLSMYNQGFDMSQDDVRALLPAHTLEGRARSSESKRQR 100
           EF S+Y+QG DMSQ+DV A  PAHT   RARSS  KR+R
Sbjct: 61  EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKR 98

The following BLAST results are available for this feature:

BLAST of MELO3C010513 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052215.1	9.8e-49	97.09	transposase [Cucumis melo var. makuwa] >TYK01782.1 transposase [Cucumis melo var...	[more]
KAA0067019.1	5.1e-29	70.71	retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p...	[more]
KAA0033884.1	4.3e-28	65.66	retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p...	[more]
TYK20513.1	2.8e-27	65.66	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050806.1	6.2e-27	65.66	retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p...	[more]

BLAST of MELO3C010513 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C010513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UET5	4.8e-49	97.09	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00100 PE...	[more]
A0A5D3DS68	2.5e-29	70.71	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQI7	2.1e-28	65.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DAC5	1.3e-27	65.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9D5	3.0e-27	65.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C010513 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010513.1	MELO3C010513.1	mRNA