MELO3C010415 (gene) Melon (DHL92) v4

Overview
NameMELO3C010415
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMitochondrial transcription termination factor family protein
Locationchr07: 9808375 .. 9809221 (-)
RNA-Seq ExpressionMELO3C010415
SyntenyMELO3C010415
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTAGGAAGTATAAATGTGGCAACAACACAATTAAGAAGATGGTGCGGTGGCAGCCTACGTGTCGGCCGGTTGAACCATTTGGGAATAAATTAAAAGAGGTTAAAAAATAGATATATAGTATATTCCACGGCGCCGGCAGCTCTCAATTAGCACAAGAACAAGGATCTGGATTGAACCGAATTGAGAAATATGGGAGAGGGGGAAGAAGAATTGAAGACGAAAGCCGAAGATCATGAAGTTGAAATTCAGGTGTGTGTGTGTGTTTTGTTGTTATAAGTTAATAATGATAATCAAGTTGATATAATTAATAGCATGTATGTAAGTTCATAATAATTAGTTTTGAGTTATGGGAATTAATTTTCAGGAGAGGGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGAAAAACAAGAAGTGCATAGCCCCGATGAGGTGCAACGCTTGTACATTATTCTGCGGCCACTGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAAGGATGGTGGACAGAGTACCCACACCCAGGTTAATTAATTAATTCTACCCAATACCTGCATTAACTTTTTAACCATTTTATTTAAGAGATGTCCAACTTATTTTTGTCTGAATTAAAAGTAGATGAGTTAAACATGACCGTAAACCCTCACTTTGGCTCTCATACAATACTTGAACACAGGAAGTTAACATCAAAAAGCAACCGCTGTTACGGTTCATCATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCATACTGGGGATTTGTGGATATGGTCACTACCAACGTTCAAGAGATCAAGATTGCGCTTCAAGGAGGTACATCCCACTGA

mRNA sequence

GGGTAGGAAGTATAAATGTGGCAACAACACAATTAAGAAGATGGTGCGGTGGCAGCCTACGTGTCGGCCGGTTGAACCATTTGGGAATAAATTAAAAGAGGTTAAAAAATAGATATATAGTATATTCCACGGCGCCGGCAGCTCTCAATTAGCACAAGAACAAGGATCTGGATTGAACCGAATTGAGAAATATGGGAGAGGGGGAAGAAGAATTGAAGACGAAAGCCGAAGATCATGAAGTTGAAATTCAGGAGAGGGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGAAAAACAAGAAGTGCATAGCCCCGATGAGGTGCAACGCTTGTACATTATTCTGCGGCCACTGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAAGGATGGTGGACAGAGTACCCACACCCAGGAAGTTAACATCAAAAAGCAACCGCTGTTACGGTTCATCATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCATACTGGGGATTTGTGGATATGGTCACTACCAACGTTCAAGAGATCAAGATTGCGCTTCAAGGAGGTACATCCCACTGA

Coding sequence (CDS)

ATGGGAGAGGGGGAAGAAGAATTGAAGACGAAAGCCGAAGATCATGAAGTTGAAATTCAGGAGAGGGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGAAAAACAAGAAGTGCATAGCCCCGATGAGGTGCAACGCTTGTACATTATTCTGCGGCCACTGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAAGGATGGTGGACAGAGTACCCACACCCAGGAAGTTAACATCAAAAAGCAACCGCTGTTACGGTTCATCATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCATACTGGGGATTTGTGGATATGGTCACTACCAACGTTCAAGAGATCAAGATTGCGCTTCAAGGAGGTACATCCCACTGA

Protein sequence

MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTVEEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIKIALQGGTSH
Homology
BLAST of MELO3C010415 vs. NCBI nr
Match: XP_008444096.1 (PREDICTED: uncharacterized protein LOC103487535 [Cucumis melo] >KAA0064208.1 uncharacterized protein E6C27_scaffold548G001530 [Cucumis melo var. makuwa] >TYK02820.1 uncharacterized protein E5676_scaffold218G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-64
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 IALQG 126
           IALQG
Sbjct: 121 IALQG 125

BLAST of MELO3C010415 vs. NCBI nr
Match: XP_031740485.1 (uncharacterized protein LOC101213393 [Cucumis sativus] >KAE8649641.1 hypothetical protein Csa_012091 [Cucumis sativus])

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-58
Identity = 115/125 (92.00%), Postives = 119/125 (95.20%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVH PDEVQRLYIILRP SGEKTV
Sbjct: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHGPDEVQRLYIILRPQSGEKTV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQ+IK
Sbjct: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120

Query: 121 IALQG 126
            ALQG
Sbjct: 121 TALQG 125

BLAST of MELO3C010415 vs. NCBI nr
Match: XP_038895444.1 (uncharacterized protein LOC120083676 [Benincasa hispida])

HSP 1 Score: 199.1 bits (505), Expect = 2.3e-47
Identity = 105/133 (78.95%), Postives = 112/133 (84.21%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEG+E  KTKAED  VEIQERGEI+F YRPKVEKQEVHSPDEVQRLYIILRP SGEK V
Sbjct: 1   MGEGQES-KTKAED-GVEIQERGEIYFFYRPKVEKQEVHSPDEVQRLYIILRPESGEKAV 60

Query: 61  EEKQCKDG-------GQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVT 120
           EEKQ           GQ THTQEVNI+KQPLLRFIIMGRKSLPHP+ R+RPYWGFVDMVT
Sbjct: 61  EEKQSTSSSSTGTQRGQGTHTQEVNIEKQPLLRFIIMGRKSLPHPAQRARPYWGFVDMVT 120

Query: 121 TNVQEIKIALQGG 127
           T+VQ+IK ALQGG
Sbjct: 121 TDVQDIKNALQGG 131

BLAST of MELO3C010415 vs. NCBI nr
Match: XP_022956009.1 (uncharacterized protein LOC111457833 isoform X1 [Cucurbita moschata])

HSP 1 Score: 177.6 bits (449), Expect = 7.1e-41
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEE  KT+AE   VEIQERGEIFF YRPKV KQ+VH PD+VQRLYIILRP SGE+ V
Sbjct: 1   MGEGEES-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQ  +   S  TQEVNI+KQPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQ++K
Sbjct: 61  EEKQLPN-ASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 IALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

BLAST of MELO3C010415 vs. NCBI nr
Match: KAG6581755.1 (hypothetical protein SDJN03_21757, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.6e-40
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGE+  KT+AE   VEIQERGEIFF YRPKV KQ+VH PD+VQRLYIILRP SGE+ V
Sbjct: 1   MGEGEDS-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQ  +   S  TQEVNI+KQPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQ++K
Sbjct: 61  EEKQLPN-ASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 IALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

BLAST of MELO3C010415 vs. ExPASy TrEMBL
Match: A0A5D3BUL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00100 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.6e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 IALQG 126
           IALQG
Sbjct: 121 IALQG 125

BLAST of MELO3C010415 vs. ExPASy TrEMBL
Match: A0A1S3B9M2 (uncharacterized protein LOC103487535 OS=Cucumis melo OX=3656 GN=LOC103487535 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 7.6e-65
Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 IALQG 126
           IALQG
Sbjct: 121 IALQG 125

BLAST of MELO3C010415 vs. ExPASy TrEMBL
Match: A0A0A0KYP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385790 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-61
Identity = 119/129 (92.25%), Postives = 123/129 (95.35%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVH PDEVQRLYIILRP SGEKTV
Sbjct: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHGPDEVQRLYIILRPQSGEKTV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQ+IK
Sbjct: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120

Query: 121 IALQGGTSH 130
            ALQGGTSH
Sbjct: 121 TALQGGTSH 129

BLAST of MELO3C010415 vs. ExPASy TrEMBL
Match: A0A6J1GXU8 (uncharacterized protein LOC111457833 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457833 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.4e-41
Identity = 93/126 (73.81%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MGEGEE  KT+AE   VEIQERGEIFF YRPKV KQ+VH PD+VQRLYIILRP SGE+ V
Sbjct: 1   MGEGEES-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120
           EEKQ  +   S  TQEVNI+KQPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQ++K
Sbjct: 61  EEKQLPN-ASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 IALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

BLAST of MELO3C010415 vs. ExPASy TrEMBL
Match: A0A2P6RZI6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0149061 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.5e-40
Identity = 86/148 (58.11%), Postives = 105/148 (70.95%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MG+G+E  KTK ED +VEIQERGEIFF YRPKV K+E HSPD+VQR YI+LRP SGE+++
Sbjct: 1   MGQGQEVFKTKTEDVQVEIQERGEIFFFYRPKVNKEEAHSPDDVQRFYIVLRPESGERSI 60

Query: 61  EEKQCKDGGQ-----------------------STHTQEVNIKKQPLLRFIIMGRKSLPH 120
           EEKQ  D G+                           QEVNI+KQPLLRFI+MGRKSLP 
Sbjct: 61  EEKQDPDSGKEGAKRKGSDSGDEGGSGGSEGEGGHGKQEVNIEKQPLLRFIVMGRKSLPD 120

Query: 121 PSHRSRPYWGFVDMVTTNVQEIKIALQG 126
           PS +SRPYWGFV++VTTN+ ++K +LQG
Sbjct: 121 PSKKSRPYWGFVELVTTNIDDVKSSLQG 148

BLAST of MELO3C010415 vs. TAIR 10
Match: AT1G16770.1 (unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 147.9 bits (372), Expect = 5.6e-36
Identity = 80/150 (53.33%), Postives = 104/150 (69.33%), Query Frame = 0

Query: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60
           MG+G +E+KT+  D +VEIQERGEIFF YRPKV K+E HS D+VQRLYI++RP SGE   
Sbjct: 1   MGQG-KEVKTR-PDPQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPT 60

Query: 61  EEKQ------------------------CKDGGQSTH-TQEVNIKKQPLLRFIIMGRKSL 120
           EEKQ                         K+ G+  H  ++VNI+KQ LLRFI+MG+KSL
Sbjct: 61  EEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSL 120

Query: 121 PHPSHRSRPYWGFVDMVTTNVQEIKIALQG 126
           P PS +S+P+WGFV+MVTTNV+++K AL+G
Sbjct: 121 PDPSKKSQPFWGFVEMVTTNVEDVKNALKG 148

BLAST of MELO3C010415 vs. TAIR 10
Match: AT1G16770.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 103 Blast hits to 103 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 65; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 0

Query: 51  LRPLSGEKTVEEKQ------------------------CKDGGQSTH-TQEVNIKKQPLL 110
           +RP SGE   EEKQ                         K+ G+  H  ++VNI+KQ LL
Sbjct: 1   MRPESGENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLL 60

Query: 111 RFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIKIALQG 126
           RFI+MG+KSLP PS +S+P+WGFV+MVTTNV+++K AL+G
Sbjct: 61  RFIVMGKKSLPDPSKKSQPFWGFVEMVTTNVEDVKNALKG 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008444096.11.6e-64100.00PREDICTED: uncharacterized protein LOC103487535 [Cucumis melo] >KAA0064208.1 unc... [more]
XP_031740485.11.7e-5892.00uncharacterized protein LOC101213393 [Cucumis sativus] >KAE8649641.1 hypothetica... [more]
XP_038895444.12.3e-4778.95uncharacterized protein LOC120083676 [Benincasa hispida][more]
XP_022956009.17.1e-4173.81uncharacterized protein LOC111457833 isoform X1 [Cucurbita moschata][more]
KAG6581755.11.6e-4073.02hypothetical protein SDJN03_21757, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BUL87.6e-65100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B9M27.6e-65100.00uncharacterized protein LOC103487535 OS=Cucumis melo OX=3656 GN=LOC103487535 PE=... [more]
A0A0A0KYP11.3e-6192.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385790 PE=4 SV=1[more]
A0A6J1GXU83.4e-4173.81uncharacterized protein LOC111457833 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A2P6RZI66.5e-4058.11Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0149061 PE=4... [more]
Match NameE-valueIdentityDescription
AT1G16770.15.6e-3653.33unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; B... [more]
AT1G16770.21.2e-1746.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34776F17F16.3 PROTEINcoord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010415.1MELO3C010415.1mRNA