MELO3C010406.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C010406.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Retrotransposon protein
Location	chr07: 9797703 .. 9798098 (-)
RNA-Seq Expression	MELO3C010406.jh1
Synteny	MELO3C010406.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGATGGGCTCTAACAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGATCTGATTCGCAAATGTATGGAGGCTGCGACTGATCAGCTGAGAACCATTGCAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCAGTGCAAGTGATTGAGCTTATGGAGGCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAGAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAGGGTCCCTCCTTGG

mRNA sequence

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGATGGGCTCTAACAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGATCTGATTCGCAAATGTATGGAGGCTGCGACTGATCAGCTGAGAACCATTGCAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCAGTGCAAGTGATTGAGCTTATGGAGGCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAGAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAGGGTCCCTCCTTGG

Coding sequence (CDS)

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGGTAGATCAGGCCAGTCGAGCGATGGTAGGATGGGCTCTAACAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGATCTGATTCGCAAATGTATGGAGGCTGCGACTGATCAGCTGAGAACCATTGCAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCAGTGCAAGTGATTGAGCTTATGGAGGCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAGAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAGGGTCCCTCCTTGG

Protein sequence

MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATDQLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFDSMKTAYCRVPPW

Homology

[Close]

BLAST of MELO3C010406.jh1 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (618), Expect = 4.48e-79
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMCRPRMNMSPKDMMSGRS QSSD RM S+RQKRKRFMQQLETYDLIRKCME ATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTI EWPEKAMSREDVMPVQVIEL E+IPNLTIAEKSKCIMIVNQKVSL+RSFIKMFD
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKTAYCRVPPW 132
           SMKTAYC+VPPW
Sbjct: 207 SMKTAYCKVPPW 218

[Close]

BLAST of MELO3C010406.jh1 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 242 bits (618), Expect = 1.62e-77
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMCRPRMNMSPKDMMSGRS QSSD RM S+RQKRKRFMQQLETYDLIRKCME ATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTI EWPEKAMSREDVMPVQVIEL E+IPNLTIAEKSKCIMIVNQKVSL+RSFIKMFD
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKTAYCRVPPW 132
           SMKTAYC+VPPW
Sbjct: 320 SMKTAYCKVPPW 331

[Close]

BLAST of MELO3C010406.jh1 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 201 bits (510), Expect = 5.17e-63
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFP MC PRMNMSPKDMM GRSG+SSDGR GS+ QKRK  MQQ ETYDLIR+CMEAATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTIAEWP+KAMS ED M  QVIEL++AI NLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKTAYCRV 129
            MK AYCRV
Sbjct: 178 LMKAAYCRV 186

[Close]

BLAST of MELO3C010406.jh1 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (504), Expect = 8.24e-62
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMC PRMNMSP++MM GRSG+S+DGRMGSN QKRK  MQQ ETYDLI +CMEAATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTIAEWPEK MS ED M  QVIEL+EAIPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKTAYCRV 129
           SMK  Y R+
Sbjct: 199 SMKAIYGRI 207

[Close]

BLAST of MELO3C010406.jh1 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 1.48e-38
Identity = 79/129 (61.24%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMC PRMNMSP+DM+ GRS +SSDGR GS+ QKRKR MQQ ET+DLI         
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLI--------- 158

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
                               +QVIELME IPNLT+AEKSKCIMI+NQKVSL RSFIKM D
Sbjct: 159 ------------------CELQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 200

Query: 121 SMKTAYCRV 129
           SM  AYC+V
Sbjct: 219 SMMAAYCKV 200

[Close]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 242 bits (618), Expect = 2.17e-79
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMCRPRMNMSPKDMMSGRS QSSD RM S+RQKRKRFMQQLETYDLIRKCME ATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTI EWPEKAMSREDVMPVQVIEL E+IPNLTIAEKSKCIMIVNQKVSL+RSFIKMFD
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKTAYCRVPPW 132
           SMKTAYC+VPPW
Sbjct: 207 SMKTAYCKVPPW 218

[Close]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 7.84e-78
Identity = 122/132 (92.42%), Postives = 126/132 (95.45%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMCRPRMNMSPKDMMSGRS QSSD RM S+RQKRKRFMQQLETYDLIRKCME ATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTI EWPEKAMSREDVMPVQVIEL E+IPNLTIAEKSKCIMIVNQKVSL+RSFIKMFD
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKTAYCRVPPW 132
           SMKTAYC+VPPW
Sbjct: 320 SMKTAYCKVPPW 331

[Close]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 201 bits (510), Expect = 2.50e-63
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFP MC PRMNMSPKDMM GRSG+SSDGR GS+ QKRK  MQQ ETYDLIR+CMEAATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTIAEWP+KAMS ED M  QVIEL++AI NLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKTAYCRV 129
            MK AYCRV
Sbjct: 178 LMKAAYCRV 186

[Close]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 198 bits (504), Expect = 3.99e-62
Identity = 102/129 (79.07%), Postives = 112/129 (86.82%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMC PRMNMSP++MM GRSG+S+DGRMGSN QKRK  MQQ ETYDLI +CMEAATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
           QLRTIAEWPEK MS ED M  QVIEL+EAIPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKTAYCRV 129
           SMK  Y R+
Sbjct: 199 SMKAIYGRI 207

[Close]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 139 bits (350), Expect = 7.14e-39
Identity = 79/129 (61.24%), Postives = 88/129 (68.22%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSGRSGQSSDGRMGSNRQKRKRFMQQLETYDLIRKCMEAATD 60
           MEFPAMC PRMNMSP+DM+ GRS +SSDGR GS+ QKRKR MQQ ET+DLI         
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLI--------- 158

Query: 61  QLRTIAEWPEKAMSREDVMPVQVIELMEAIPNLTIAEKSKCIMIVNQKVSLRRSFIKMFD 120
                               +QVIELME IPNLT+AEKSKCIMI+NQKVSL RSFIKM D
Sbjct: 159 ------------------CELQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 200

Query: 121 SMKTAYCRV 129
           SM  AYC+V
Sbjct: 219 SMMAAYCKV 200

The following BLAST results are available for this feature:

BLAST of MELO3C010406.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02844.1	4.48e-79	92.42	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064184.1	1.62e-77	92.42	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048148.1	5.17e-63	79.84	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
KAA0033551.1	8.24e-62	79.07	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p...	[more]
KAA0055070.1	1.48e-38	61.24	retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p...	[more]

BLAST of MELO3C010406.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUJ4	2.17e-79	92.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VAC3	7.84e-78	92.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TYU4	2.50e-63	79.84	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B9T0	3.99e-62	79.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DLC6	7.14e-39	61.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C010406.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010406.jh1.t1	MELO3C010406.jh1.t1	mRNA