Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGAACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATGTTTCCGCAGAGGAGGCGGTAGAGGAGGTAGAGATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACCCACTCTTCCAAGATATCCTTGTTGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCTACAGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGCTTGATGATGGCCCACTCCAACCAGTCGCATCACATTGTAGACCGGTACGACAAATGGAATATATGCACGTGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA
mRNA sequence
ATGTCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGAACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATGTTTCCGCAGAGGAGGCGGTAGAGGAGGTAGAGATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACCCACTCTTCCAAGATATCCTTGTTGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCTACAGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGCTTGATGATGGCCCACTCCAACCAGTCGCATCACATTGTAGACCGGTACGACAAATGGAATATATGCACGTGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA
Coding sequence (CDS)
ATGTCACCTAGCCATGCGCCCATAAACCCACCCATCATTAACTTGAACCTTGAGCATATTGATTTAAATTTTCTCATTGTGAATTTGTCTGAAGGGGATGTTTCCGCAGAGGAGGCGGTAGAGGAGGTAGAGATAGTCGACCTTGAGCTTCCTTTGACCATTTATGACCCACTCTTCCAAGATATCCTTGTTGAGAAAGATGCAGGAGACACGAGTTCAGAGGAAGAAGCACAACTAGAGAAAGAAGTTGAACTTCTCAATGTACTTCACAATGTCATCATGGATCCTATGAACGTCACTTTTAAAGAAATGCTCTTGGAGAACGTGGTGATGAAGGATCAAATCGCCAGCCTTAACACTCAGGTGTATGGATTAGAAGCCACAGTCTCCACCCTCAACTCTACAGTCGTACAACTCTCCTCTACCTTGACTAACTTAACCAGCTTGATGATGGCCCACTCCAACCAGTCGCATCACATTGTAGACCGGTACGACAAATGGAATATATGCACGTGGTGTTTGTACAGCGTGTTCCCTAGCCTATCATCGCACCTGAGTTGA
Protein sequence
MSPSHAPINPPIINLNLEHIDLNFLIVNLSEGDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSHHIVDRYDKWNICTWCLYSVFPSLSSHLS
Homology
BLAST of MELO3C010100 vs. NCBI nr
Match:
TYJ97037.1 (pol [Cucumis melo var. makuwa])
HSP 1 Score: 288.9 bits (738), Expect = 3.1e-74
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0
Query: 32 GDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN 91
GDVSAEEAVEEVEIVDLELPLTIYD LFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN
Sbjct: 286 GDVSAEEAVEEVEIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN 345
Query: 92 VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM 151
VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM
Sbjct: 346 VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM 405
Query: 152 AHSNQSHHIVDRYDKWNICTWCLYSVFPSLSSHLS 187
AHSNQS HIVDR+DKWNICTWCLYSVFPSLSSHLS
Sbjct: 406 AHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS 440
BLAST of MELO3C010100 vs. NCBI nr
Match:
KAA0040567.1 (hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK05610.1 hypothetical protein E5676_scaffold98G00660 [Cucumis melo var. makuwa])
HSP 1 Score: 173.7 bits (439), Expect = 1.5e-39
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = 0
Query: 8 INPPIINLNLEHIDLNFLIVNLSEGDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKD 67
IN IINL+LEHIDLN +VNLSE + S E+A EEVEIVD LPL +YDP FQDI +++D
Sbjct: 45 INLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKED 104
Query: 68 AGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQ 127
AG TSS+EEAQ EKEVE +VL+NVI++ MN F E+ L+NV KDQI +LN Q
Sbjct: 105 AGKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQ 164
Query: 128 VYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSHHI 161
V LEA VS LNSTVVQLS L NLTSLM+AHSNQS HI
Sbjct: 165 VQSLEAMVSNLNSTVVQLSFALINLTSLMIAHSNQSCHI 203
BLAST of MELO3C010100 vs. NCBI nr
Match:
TYK05894.1 (hypothetical protein E5676_scaffold1085G00020 [Cucumis melo var. makuwa])
HSP 1 Score: 159.8 bits (403), Expect = 2.2e-35
Identity = 93/138 (67.39%), Postives = 110/138 (79.71%), Query Frame = 0
Query: 34 VSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQL------EKEVELLN 93
V AE+ EEVEIVD ELPLT+YDPLFQDI +E+DAG+ SS+EEAQL EKEVE N
Sbjct: 48 VEAEKVAEEVEIVDPELPLTVYDPLFQDIPIEEDAGEKSSKEEAQLEEEAPTEKEVEPRN 107
Query: 94 VLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLT 153
VLHNVI MN FKE++LENV MKDQI + TQ+ GLEATVSTLNS V QLSS LT+LT
Sbjct: 108 VLHNVIAKLMNAAFKEVVLENVTMKDQITNY-TQMQGLEATVSTLNSMVPQLSSALTSLT 167
Query: 154 SLMMAHSNQSHHIVDRYD 166
SLM+A+SNQSHHI ++++
Sbjct: 168 SLMIAYSNQSHHIAEQHN 184
BLAST of MELO3C010100 vs. NCBI nr
Match:
KAA0041154.1 (hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa])
HSP 1 Score: 128.3 bits (321), Expect = 7.1e-26
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 0
Query: 33 DVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLE------KEVELL 92
+VS E+A+E+ IVDL+L LTIYDPLFQDILVE+DAG+TS EEEAQ + KEVE
Sbjct: 31 EVSTEKAIEDEAIVDLDLSLTIYDPLFQDILVEEDAGETSFEEEAQPDDEALAAKEVEFY 90
Query: 93 NVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 137
+VLHNVI M T KE LLEN+VMKDQIASLNTQV GLEATVS LNS V
Sbjct: 91 DVLHNVIAGHMYTTSKEALLENMVMKDQIASLNTQVQGLEATVSNLNSMV 140
BLAST of MELO3C010100 vs. NCBI nr
Match:
TYK02456.1 (hypothetical protein E5676_scaffold1738G00760 [Cucumis melo var. makuwa])
HSP 1 Score: 126.3 bits (316), Expect = 2.7e-25
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 0
Query: 29 LSEGDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLE------KE 88
+ +G+VS E+A E+ IVDL+L LTIYDPLFQDILVE+DAG+TS EEE Q + KE
Sbjct: 74 IPQGEVSIEKATEDEAIVDLDLSLTIYDPLFQDILVEEDAGETSFEEETQPDDEALAAKE 133
Query: 89 VELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 137
VE +VLHNVI M T KE LLEN+VMKDQIASLNTQV GLEAT+ LNS V
Sbjct: 134 VEFCDVLHNVIAGHMYTTSKEALLENMVMKDQIASLNTQVQGLEATIFNLNSMV 187
BLAST of MELO3C010100 vs. ExPASy TrEMBL
Match:
A0A5D3BD35 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1)
HSP 1 Score: 288.9 bits (738), Expect = 1.5e-74
Identity = 152/155 (98.06%), Postives = 153/155 (98.71%), Query Frame = 0
Query: 32 GDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN 91
GDVSAEEAVEEVEIVDLELPLTIYD LFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN
Sbjct: 286 GDVSAEEAVEEVEIVDLELPLTIYDSLFQDILVEKDAGDTSSEEEAQLEKEVELLNVLHN 345
Query: 92 VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM 151
VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM
Sbjct: 346 VIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLTSLMM 405
Query: 152 AHSNQSHHIVDRYDKWNICTWCLYSVFPSLSSHLS 187
AHSNQS HIVDR+DKWNICTWCLYSVFPSLSSHLS
Sbjct: 406 AHSNQSRHIVDRHDKWNICTWCLYSVFPSLSSHLS 440
BLAST of MELO3C010100 vs. ExPASy TrEMBL
Match:
A0A5D3C2N8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00660 PE=4 SV=1)
HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 102/159 (64.15%), Postives = 119/159 (74.84%), Query Frame = 0
Query: 8 INPPIINLNLEHIDLNFLIVNLSEGDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKD 67
IN IINL+LEHIDLN +VNLSE + S E+A EEVEIVD LPL +YDP FQDI +++D
Sbjct: 45 INLSIINLDLEHIDLNVPVVNLSEWEASIEKAAEEVEIVDPNLPLIVYDPFFQDIPIKED 104
Query: 68 AGDTSSEEEAQ------LEKEVELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQ 127
AG TSS+EEAQ EKEVE +VL+NVI++ MN F E+ L+NV KDQI +LN Q
Sbjct: 105 AGKTSSKEEAQSDDEAPTEKEVEFPDVLYNVIVEVMNAAFNEVFLKNVAKKDQITNLNIQ 164
Query: 128 VYGLEATVSTLNSTVVQLSSTLTNLTSLMMAHSNQSHHI 161
V LEA VS LNSTVVQLS L NLTSLM+AHSNQS HI
Sbjct: 165 VQSLEAMVSNLNSTVVQLSFALINLTSLMIAHSNQSCHI 203
BLAST of MELO3C010100 vs. ExPASy TrEMBL
Match:
A0A5D3C3K8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1085G00020 PE=4 SV=1)
HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 93/138 (67.39%), Postives = 110/138 (79.71%), Query Frame = 0
Query: 34 VSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQL------EKEVELLN 93
V AE+ EEVEIVD ELPLT+YDPLFQDI +E+DAG+ SS+EEAQL EKEVE N
Sbjct: 48 VEAEKVAEEVEIVDPELPLTVYDPLFQDIPIEEDAGEKSSKEEAQLEEEAPTEKEVEPRN 107
Query: 94 VLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTVVQLSSTLTNLT 153
VLHNVI MN FKE++LENV MKDQI + TQ+ GLEATVSTLNS V QLSS LT+LT
Sbjct: 108 VLHNVIAKLMNAAFKEVVLENVTMKDQITNY-TQMQGLEATVSTLNSMVPQLSSALTSLT 167
Query: 154 SLMMAHSNQSHHIVDRYD 166
SLM+A+SNQSHHI ++++
Sbjct: 168 SLMIAYSNQSHHIAEQHN 184
BLAST of MELO3C010100 vs. ExPASy TrEMBL
Match:
A0A5A7TCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00750 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 3.4e-26
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 0
Query: 33 DVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLE------KEVELL 92
+VS E+A+E+ IVDL+L LTIYDPLFQDILVE+DAG+TS EEEAQ + KEVE
Sbjct: 31 EVSTEKAIEDEAIVDLDLSLTIYDPLFQDILVEEDAGETSFEEEAQPDDEALAAKEVEFY 90
Query: 93 NVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 137
+VLHNVI M T KE LLEN+VMKDQIASLNTQV GLEATVS LNS V
Sbjct: 91 DVLHNVIAGHMYTTSKEALLENMVMKDQIASLNTQVQGLEATVSNLNSMV 140
BLAST of MELO3C010100 vs. ExPASy TrEMBL
Match:
A0A5D3BW57 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00760 PE=4 SV=1)
HSP 1 Score: 126.3 bits (316), Expect = 1.3e-25
Identity = 74/114 (64.91%), Postives = 86/114 (75.44%), Query Frame = 0
Query: 29 LSEGDVSAEEAVEEVEIVDLELPLTIYDPLFQDILVEKDAGDTSSEEEAQLE------KE 88
+ +G+VS E+A E+ IVDL+L LTIYDPLFQDILVE+DAG+TS EEE Q + KE
Sbjct: 74 IPQGEVSIEKATEDEAIVDLDLSLTIYDPLFQDILVEEDAGETSFEEETQPDDEALAAKE 133
Query: 89 VELLNVLHNVIMDPMNVTFKEMLLENVVMKDQIASLNTQVYGLEATVSTLNSTV 137
VE +VLHNVI M T KE LLEN+VMKDQIASLNTQV GLEAT+ LNS V
Sbjct: 134 VEFCDVLHNVIAGHMYTTSKEALLENMVMKDQIASLNTQVQGLEATIFNLNSMV 187
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYJ97037.1 | 3.1e-74 | 98.06 | pol [Cucumis melo var. makuwa] | [more] |
KAA0040567.1 | 1.5e-39 | 64.15 | hypothetical protein E6C27_scaffold262G001370 [Cucumis melo var. makuwa] >TYK056... | [more] |
TYK05894.1 | 2.2e-35 | 67.39 | hypothetical protein E5676_scaffold1085G00020 [Cucumis melo var. makuwa] | [more] |
KAA0041154.1 | 7.1e-26 | 69.09 | hypothetical protein E6C27_scaffold128G00750 [Cucumis melo var. makuwa] | [more] |
TYK02456.1 | 2.7e-25 | 64.91 | hypothetical protein E5676_scaffold1738G00760 [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BD35 | 1.5e-74 | 98.06 | Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00990 PE=4 SV=1 | [more] |
A0A5D3C2N8 | 7.1e-40 | 64.15 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3C3K8 | 1.1e-35 | 67.39 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7TCG4 | 3.4e-26 | 69.09 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BW57 | 1.3e-25 | 64.91 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |