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MELO3C010044 (gene) Melon (DHL92) v4
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAAAACAGCATTGCTTTCATCTTCTTCGTCCTCACTCTCCTCCAAAGAAATGGCTTCCACTTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAGAGCAGCTCTATTCCCTCACTCCTCCACCATCAAATCTCGCCACCATTTTTCTCTCCCTTTTCTCCCCTCAAAATCCGCAAAGTCAGCAAAATCCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTTCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCTCATTCGAGCTTCGTCGCGTTCTTCGCTCTATACTTGGGCGTGGTTCGAAACCCTAGTTTCAGTCACTACGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAGGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTATGGTTTCTTGTCTTCTGGGTCGAACCCCTCACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGGTTTGTTCTTCAACCCTTTCTCTTTCTTCTATTTTGGGAATTTTTGGGATTCAGGAGTTTGTAATTTAGGTTTTGATTTTTCTTTTCTGAAAGTTTTTGGGAGAAATCTGAAATCAAATCAGTGTAGGTTGGTCTATACACTTTGATAAGATGTATGCGAGAGGAATTGAGAAGTGTATTTTGATTGTGCATTTTTTTTTTTGTTACAAGAGTTCTTTGCAGCTATACTAAATAAGTTTTTGAAGCATTTGTGCAAGGGAACTGTAGATAATGAGATGACTTAAATACTATTTTGTACACCATTACTTGTCAAAAGGTTCATTTTGGTTTACATAGTTTCTAATTTTGTTTATTTTGGTACTCTCTTTTCAAAAGGAAGTCTGACACTTAAGTTGAAAGTACATAGACAAGGGGGAAAAACAAGAACCAATATTAAAGGTATATGGACCAAATTAGTGTTTGAACGTAATAAATGAAGAAAGTGATGATATTGGAGAGAACAATGTAGATGGAGAAGCGTCAAGTGAAATAGGACGTGGTATATTTTTTTGGATTTAAGATCCACTATTGCAAATATATGTGAGGGAATCTTAAAACTTAGGAAAGCAAGAAGCAGTGTGTATGTTGAATCTAGTTCTGTATCCACTGAATATGTGAAGCTTGCGAGAGTGTTGGAGAGAGGATCTTTGTTTCACCGTGTAAGACATTGATATAGCAACTTTTTTCTTTAATATGATGATAGGTTAATTCTATCTTTTATATTGTATATCACAATTATAATTAGGTGGAAGTTATGTCACAGCTAGGTAGGTTTGTAGCAACTAATGGTGAAGGGAAGCAAGCTGAAATGAACATTGTTCAACTAGTATAAAGTATGCACGTCAATCTGGAGGTTGGAGGTTAAACCCCTCGCCAAACAATTGTGTAAGGAAAGGATGGTGATTCTTTGTAGTTTGGTTGAAAGAATGATAAGCCCCGTGTACTTTTGAAGAATTGATAAAAAAAAAAAAAAATGGATGGGGACTTTCTTCCACTTTTATTTTTTTAAAAAAATTGATCTCTAGAACTTGTGATAGTTTTTAATTTGGTCTCCATAGCAATCTTGGCTGACAAGCATCAAGATAATTCATTGAAATAGTTGGCTAAACAGAG AGAAAACAGCATTGCTTTCATCTTCTTCGTCCTCACTCTCCTCCAAAGAAATGGCTTCCACTTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAGAGCAGCTCTATTCCCTCACTCCTCCACCATCAAATCTCGCCACCATTTTTCTCTCCCTTTTCTCCCCTCAAAATCCGCAAAGTCAGCAAAATCCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTTCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCTCATTCGAGCTTCGTCGCGTTCTTCGCTCTATACTTGGGCGTGGTTCGAAACCCTAGTTTCAGTCACTACGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAGGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTATGGTTTCTTGTCTTCTGGGTCGAACCCCTCACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAGCTTCCAGCTAGGTAGGTTTGTAGCAACTAATGGTGAAGGGAAGCAAGCTGAAATGAACATTGTTCAACTAGTATAAAGTATGCACGTCAATCTGGAGGTTGGAGGTTAAACCCCTCGCCAAACAATTGTGTAAGGAAAGGATGGTGATTCTTTGTAGTTTGGTTGAAAGAATGATAAGCCCCGTGTACTTTTGAAGAATTGATAAAAAAAAAAAAAAATGGATGGGGACTTTCTTCCACTTTTATTTTTTTAAAAAAATTGATCTCTAGAACTTGTGATAGTTTTTAATTTGGTCTCCATAGCAATCTTGGCTGACAAGCATCAAGATAATTCATTGAAATAGTTGGCTAAACAGAG ATGGCTTCCACTTCCATCCCTCTCCTCAATCTCTCCGCCAAAACCGCCATTAGAGCAGCTCTATTCCCTCACTCCTCCACCATCAAATCTCGCCACCATTTTTCTCTCCCTTTTCTCCCCTCAAAATCCGCAAAGTCAGCAAAATCCACCCCCATTCGCATGTCCTACAACCCTACTCCAGCCACCGACCGCCTCATCTCCGCCGTTTCTTACACTCTCCCCTTCTTCAACTCCCTCCAGTACGGCCGCTTCCTCTTCGCCCAGTACCCAGCCCTCGGCTTCGCCTTCGAGCCGCTGCTCCCGATTCTAGGGCTTTATCGCTCGATCCCTCATTCGAGCTTCGTCGCGTTCTTCGCTCTATACTTGGGCGTGGTTCGAAACCCTAGTTTCAGTCACTACGTGCGCTTCAATTCGATGCAAGCGGTGACTCTGGACGTGCTGCTGGTGGTGCCATTGTTGATACAGAGGATCCTGAGTCCGGGAAGAGGCGGGATAGGGTTCAAGATAATGGTTTGGAGCCATAATGGATTGTTTGTTTTCAGTGTTTTGTGCTTTCTATATAGTATGGTTTCTTGTCTTCTGGGTCGAACCCCTCACTTGCCCATTGTTGCTGATGCTGCTGGCAGGCAGATTTAG MASTSIPLLNLSAKTAIRAALFPHSSTIKSRHHFSLPFLPSKSAKSAKSTPIRMSYNPTPATDRLISAVSYTLPFFNSLQYGRFLFAQYPALGFAFEPLLPILGLYRSIPHSSFVAFFALYLGVVRNPSFSHYVRFNSMQAVTLDVLLVVPLLIQRILSPGRGGIGFKIMVWSHNGLFVFSVLCFLYSMVSCLLGRTPHLPIVADAAGRQI Homology
BLAST of MELO3C010044 vs. NCBI nr
Match: XP_008443678.1 (PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443680.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443681.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443682.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >XP_008443683.1 PREDICTED: protein TIC 20-II, chloroplastic [Cucumis melo] >KAA0038239.1 protein TIC 20-II [Cucumis melo var. makuwa] >TYK30638.1 protein TIC 20-II [Cucumis melo var. makuwa]) HSP 1 Score: 411.4 bits (1056), Expect = 4.8e-111 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of MELO3C010044 vs. NCBI nr
Match: XP_004139099.1 (protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660219.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >XP_011660220.1 protein TIC 20-II, chloroplastic [Cucumis sativus] >KGN66660.1 hypothetical protein Csa_006938 [Cucumis sativus]) HSP 1 Score: 384.4 bits (986), Expect = 6.2e-103 Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0
BLAST of MELO3C010044 vs. NCBI nr
Match: XP_038879337.1 (protein TIC 20-II, chloroplastic [Benincasa hispida]) HSP 1 Score: 368.2 bits (944), Expect = 4.6e-98 Identity = 189/211 (89.57%), Postives = 198/211 (93.84%), Query Frame = 0
BLAST of MELO3C010044 vs. NCBI nr
Match: XP_022987499.1 (protein TIC 20-II, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92 Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0
BLAST of MELO3C010044 vs. NCBI nr
Match: XP_022960653.1 (protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >XP_022960654.1 protein TIC 20-II, chloroplastic-like [Cucurbita moschata] >KAG6590106.1 Protein TIC 20-II, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 349.4 bits (895), Expect = 2.2e-92 Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 8.6e-63 Identity = 123/191 (64.40%), Postives = 145/191 (75.92%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 1.9e-33 Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.1e-20 Identity = 51/152 (33.55%), Postives = 91/152 (59.87%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.9e-07 Identity = 49/193 (25.39%), Postives = 91/193 (47.15%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1) HSP 1 Score: 47.0 bits (110), Expect = 3.1e-04 Identity = 53/225 (23.56%), Postives = 93/225 (41.33%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy TrEMBL
Match: A0A1S3B9C6 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103487217 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy TrEMBL
Match: A0A5D3E499 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00600 PE=3 SV=1) HSP 1 Score: 411.4 bits (1056), Expect = 2.3e-111 Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy TrEMBL
Match: A0A0A0LXS7 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_1G654890 PE=3 SV=1) HSP 1 Score: 384.4 bits (986), Expect = 3.0e-103 Identity = 199/211 (94.31%), Postives = 203/211 (96.21%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy TrEMBL
Match: A0A6J1JJ22 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111485044 PE=3 SV=1) HSP 1 Score: 350.1 bits (897), Expect = 6.3e-93 Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0
BLAST of MELO3C010044 vs. ExPASy TrEMBL
Match: A0A6J1HBN6 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111461378 PE=3 SV=1) HSP 1 Score: 349.4 bits (895), Expect = 1.1e-92 Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0
BLAST of MELO3C010044 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 ) HSP 1 Score: 241.5 bits (615), Expect = 6.1e-64 Identity = 123/191 (64.40%), Postives = 145/191 (75.92%), Query Frame = 0
BLAST of MELO3C010044 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34 Identity = 69/151 (45.70%), Postives = 101/151 (66.89%), Query Frame = 0
BLAST of MELO3C010044 vs. TAIR 10
Match: AT1G04940.1 (translocon at the inner envelope membrane of chloroplasts 20 ) HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05 Identity = 53/225 (23.56%), Postives = 93/225 (41.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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