MELO3C009928 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009928
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNase H domain-containing protein
Location	chr04: 26947145 .. 26952101 (+)
RNA-Seq Expression	MELO3C009928
Synteny	MELO3C009928

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTACCGCTCCTTCCACTTCTTCACTCTACGCTAACTCTTTTTCCTTGTCTCTATTATTATCTTTCTATTCGCTAGGGCTCTCTATCATCTTCTACTTCTACGCCACGATCAGAATTGACTTCCTTTTTTTTTTGTGACATTTGAATGTGGGTGTTATTTATTGAAGATGGAGGGAGATAAAGATGCATATTACGTTGTACAGAAAGGGGACGTTTTTGGATTTTATAGGAGTGCGAAGGAGTTGGTGACTCAACATGGACGTTTTGTAAGTGCTCAAAGTTTTGTTTTCCTTTTACTTGTGTTTATGTACGTGTGCTGTATATTTGTATCATCCCAGGACTGGGAATGCTTTTTTTTTTCCCCCTCTCTCTCTCTCTCAAATCTTATAAACCAATCAGGAGCATGATTTTGGGGTTTATCCGGTTGGTAAGCTATCCAGTTGGTTGCTTTGGAATCGTTGGTTTTAAAGAACTTAATGGTGAGATTCAAGTTTAACATATATAGTTTTTTAAATTAAATATTTTTAAATGTTAACACATGTTAAAAGTGGGTTTGGTTACGTTTTCTTAAAGTTAATTTTAATAGCAAGCATCTGTAAGTGATTCCACACATGTCAAGTTACCCTGAAGTGAATCTAGAGTGATTTCCATTTTCCACTTTCCTGTCAGTCATATTAGAGTGATTCTTGATTCTTTACCAATTTGATTATTTCAGGAGTGGTTTTTATTTGGTACCAAAACTCAGATTAAAAAAAATAAAAATTAGCCATTCAAAATCATCAAGGAAGCTAGCTTAAGCACACATTAACTGAACTATAGAACGTTCGTCCTTCTCTTCCTGCAGGTATTTTGTGTTCTTTCTTATCTGTTGGTGTTGCTACTGATTATGGACACTGTCACTGTCCACATTGACATCCCATGTAATTTTAGTTGAGAGTCTGTTGGGCATTTCAAGGAATACAAGGGTTCGCATTTCAGATTTTGGTGTGATATATTATGTGAGGATAGTGAGCCTTTTGGATTAAATACAATCAATAAATACTAAGTTAAACATCTCAGATTTATCATAGCACTATAACATGAGTAAAGGTCTTGGATCTCGAATATTGGAACTCCTTTGTCTCTGGCTTATTTACCATGTCCCAATCCCACTTTTCTTCCAACATCATGTTGTACTTGGACATAGTGCCCAAATTGGCAACGGATGGGATCTTGCTTCTCCTGCTAACGTAAAGCGGAAAAGAAAAATATTATTAAACTTATTTACTTGCTTCGATATATGTGGTTGATGTCACTTCTTCTCCATCTTACTAGGATCCTAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAAGAATATCTCGTATCACACGGACTTCAGAGTGCCACCTACTCTATAAGTGCTGCCAATGTGACAAAGGATCTATTTGGAAAAATACTTCCTTGTTTTCCTTATGAGGTTTGAAACAATGCATTTTTTGTTCTAAAATATTTAATTATTCCAACTATTCTAATTCAACTGTACTTTTATATTAAAAGAAATATAATCCATTGTTTTTGTATCTGAAGGCATTAAACGTTTTGTTAAATGAGTTTGATATAGGAATCTTTCTTGGTTTATTTATGAAATTGACATGATTAATAAACTTGCCTGGTGACCCTTCTTTTTTATTTCCAGACTTTGTTTAACGAATTGTATATTGTAATGACATAGAGGTCGGGGTTGTAAAGTCTGCTAGTTATATTTTTGTTTGAAACATATTTATATTTTTCTCAGCAACCATCTACTACTAGAGGAAAAATGGCTGAAGAATACCCCAAAGCTGAGAGACAAGAACGAGTCCTCAAGAATACTGAATATGTAAGTTTTTCTGTTTCGCAGTAAAAATTATTCAGTTGAAATTTTCACGAGTCACTGTGGTAATAGATAGAAAGGTCAAGGTGTGCCCAGGATTCATGTGGCTGTTGTTTGCTGTCTTCAGATTTGATTGGGAAAAGGGTACATTGTTTTGACTTCCTATACCCAAGTGTGCGTACTTTGTAGTTTTTACTTCTCTGTTTGCTTAAGTTTGTGTCTTGAACTGTAGATGGTGACTTCCACTTTCTCTCCCACTAATATTCTTTTCTATTTAGAGTTCTTGTAAGCTCATTTAGCCGTGGAATAACATAATTGTGATAGCATGGTTTGCTCCTAATGAGAAACTCAAGAAAGACCAATGTAACTAGGGAAACCTAGTTCAAACAATGGATTTTGAATTCATGAGGCCTGAAATTTTTTGTTTCTCACCAAGAGTTTCTGAAAAGGCTTTTGTCTTTACTAAGGAGTTTATAAGGCTTCATGGGTTCAAATTCCAGTGTATTGAACAGAGAACGTTTTCATGAGAACATTGGGGGTAGATTTTCTGAAGATGCAACCCATGGACTGTTTGAGGTTAGTAAATAGTTGCTTGGGAAACCTATTTCTCACTTTTTCGTGTCTGCTAAACCAACTGGTTAGGCTAGGTGAGTTGCGTGGGTATAACATCTTCCATGCATCTACAAAAGACTTTTTTCAAGTGTTGAAGGGTGGATTCCCATCCTTGTTGGTCATTATGAACAGGCTTCCTAATTTTCTACTATTGCAAATTTTGATGATTTGAAGTCGCAATAAACACGGGCACAATTGAAAGGCTCTTGTATAGCTCTTTGTGGGAGGTTCCAACTAACTTTGGTGTTTGGCCCATAGGTCGCTCTTTTATTCTTTTTTAGTAATGTATATCTCTAAGTTTCTTACTTTTAAATAGAAGTTCGGTACAAAGAAAAATGCCCTCATGAACGTACTGACTATATTGTCACTCTTTCCTTTTACCAATGACCTGCAATTGTCCTGAGTTTTATCTTAATTTGCCAGTGGTTTTTAGATAATTAATTGAATTTATCTGCTTCCAGACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGGCTAGCAGGTGCTGGAGCTATTTTACGTGCTAACGATGGATCTACGGTTGTTAAATTCAATTATTCTCTCATTCTCCAAGCCTTTACTTTTACTTATTTATTGTTAGTGTTTGTTTTGGCTTAAAGCTTAAGTCTGCTTATTTGATAGGTCTGTAGGTTGCAAGAAGGGGTTGGGATTGCTACATGTAATGTTGCTGAATATCGTGCTATAATTTTAGGACTGAAACATGCTCTAAAGAACGGCATTAAACACATTTATGTCCAAGGAGACTCCAAGCTTGTTTGTATGCAGGTTTGTCAGCTTTATTAGCATCTTACATACGTAGGTGCACCAGCTAACAAACTTTGCTCTACACAACTATATGTATTTTCCAAATGAACGCAAAGTTACAATGTTCAAGCTGACAGTTGCGAATATCTCCTATTGTATACACATATAGATAGATAGATCAAGGAAGCTGTTAAACTCTTTGTAAAAAACACGTAGAAGGGGAAGAGAGAATGTAAAATGGACATTTACTCTTTTGTAACTATGGTGTGACCAAAATATTCCAAGTGGCTGTCATCCATATAATCACCTGTATCACAACGCTAGGCTTTTAAGATATCGCTTAGTTTTGAAAAGTGGATTACTTAAACTAAGCACAATCACAAGTTTGATTTATATATCCATGACTTCTGTCAATTTTTCTGCTTACTTTCAATCTTTACCGTGTTCGAGTCCGATGTAAAAGGGAACACTGATTTTCTATGACAGGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATATGGCTGAATTATGTAAAGTGGCAAAGGAGCTTAAGGATAAGTTTGTGTCATTTGAGATCAGCCATGTCCCTAGGGTACATTTTTTTTCCTTTTAGACTGAATATCCCTAGGAGCATACAACAGCATATATTTATGTGTGTGTTTCCTGAAGATTTTGAAGTATTGTTTTTTCCTTCTTTTTGGCATTCAATTCTTTCATAAGTTTTTGTATTTGTCCAATCCATCTTAGTTGACAGCGGAGCATGCACCTTTTCTTTTGTTTCTTGAACTTTTATTGAAAAAAAATTAAATAATAGACAAGTCATAACAAAGAGAACACCAGAAATTAATGTTGGAGGAATAGATTCAAATCTCACAGCGCCATGTACCTAAGATGTTAAAATTTTACGAGTTTTGTGACTGCTAAATGTTGTAGAATGGTGAAGTTGCATTAATCAATGTTGCACAGTTCTTTATTGCATGCTTTTCAAAGTTTTTGGTATTCTTTTAGACATGAGAAATGAATAAACCTTCTTTGATGCCTTAAATATTTCGATATTGTTTCGATTTTCTTCAAGAGTAAGCTATTCAATACTGTGATCATCTTATTCTCTCTCATTTTGTCATTTCATTCTTACTGATACATAACTCATTGCCTGCCCTTTTACTGGTTCTGCAATTGTAAATGACATATATTTCCATTTCAAGAACCGAAATTCCGATGCCGATGCTCTAGCGAACCGCGCTATACATCTCCAAGGTGAGTTAGACCTTTCCCAAAGTTAAACCACTGCATCATCCTCCGTTGCTTTGCATTTGTTTGGCTTTTTTCACTGAAGCTTGATTAAATTATGCAGATGGAGTCGTAGTAGAAGACTGCATTCATAAATGAACTTCAAACATTTTCAAACGGTAGGCAAGGATATTCTCTGCATTAAGCTGCATAGCAAAGCTGAACAGATTGACACCCTATTTTGTACCATTTGAATGCTAAAGATACTTTGATCAACATCCTTATTTTGGTTACTATGTTAACTAATGCAACTTTAGAGCTGTAAATATAGAAAACTTGAATATTGGCATGTCAAGAGTAATTAGTCCAGCGTGATGGTTTCTCGCCCCAGATGGTTTCTATGATCTCGAGCCTTGAAAGTCTATTTGTCTCAGGTTCAATCCCAATTCCCAGTCCTCGTGATAGGTAAGG

mRNA sequence

ATTACCGCTCCTTCCACTTCTTCACTCTACGCTAACTCTTTTTCCTTGTCTCTATTATTATCTTTCTATTCGCTAGGGCTCTCTATCATCTTCTACTTCTACGCCACGATCAGAATTGACTTCCTTTTTTTTTTGTGACATTTGAATGTGGGTGTTATTTATTGAAGATGGAGGGAGATAAAGATGCATATTACGTTGTACAGAAAGGGGACGTTTTTGGATTTTATAGGAGTGCGAAGGAGTTGGTGACTCAACATGGACGTTTTGATCCTAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAAGAATATCTCGTATCACACGGACTTCAGAGTGCCACCTACTCTATAAGTGCTGCCAATGTGACAAAGGATCTATTTGGAAAAATACTTCCTTGTTTTCCTTATGAGCAACCATCTACTACTAGAGGAAAAATGGCTGAAGAATACCCCAAAGCTGAGAGACAAGAACGAGTCCTCAAGAATACTGAATATACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGGCTAGCAGGTGCTGGAGCTATTTTACGTGCTAACGATGGATCTACGGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATATGGCTGAATTATGTAAAGTGGCAAAGGAGCTTAAGGATAAGTTTGTGTCATTTGAGATCAGCCATGTCCCTAGGAACCGAAATTCCGATGCCGATGCTCTAGCGAACCGCGCTATACATCTCCAAGATGGAGTCGTAGTAGAAGACTGCATTCATAAATGAACTTCAAACATTTTCAAACGGTAGGCAAGGATATTCTCTGCATTAAGCTGCATAGCAAAGCTGAACAGATTGACACCCTATTTTGTACCATTTGAATGCTAAAGATACTTTGATCAACATCCTTATTTTGGTTACTATGTTAACTAATGCAACTTTAGAGCTGTAAATATAGAAAACTTGAATATTGGCATGTCAAGAGTAATTAGTCCAGCGTGATGGTTTCTCGCCCCAGATGGTTTCTATGATCTCGAGCCTTGAAAGTCTATTTGTCTCAGGTTCAATCCCAATTCCCAGTCCTCGTGATAGGTAAGG

Coding sequence (CDS)

ATGGAGGGAGATAAAGATGCATATTACGTTGTACAGAAAGGGGACGTTTTTGGATTTTATAGGAGTGCGAAGGAGTTGGTGACTCAACATGGACGTTTTGATCCTAATGCAACGATCTACAAAGGGTATCACTTATCTAAAGAAGCAGAAGAATATCTCGTATCACACGGACTTCAGAGTGCCACCTACTCTATAAGTGCTGCCAATGTGACAAAGGATCTATTTGGAAAAATACTTCCTTGTTTTCCTTATGAGCAACCATCTACTACTAGAGGAAAAATGGCTGAAGAATACCCCAAAGCTGAGAGACAAGAACGAGTCCTCAAGAATACTGAATATACCTATTTTCTTGAGTTTGATGGTGCCTCAAAGGGAAATCCTGGGCTAGCAGGTGCTGGAGCTATTTTACGTGCTAACGATGGATCTACGGTTCAGGGTCTATGGAAGCTCAAAAACCAAAATATGGCTGAATTATGTAAAGTGGCAAAGGAGCTTAAGGATAAGTTTGTGTCATTTGAGATCAGCCATGTCCCTAGGAACCGAAATTCCGATGCCGATGCTCTAGCGAACCGCGCTATACATCTCCAAGATGGAGTCGTAGTAGAAGACTGCATTCATAAATGA

Protein sequence

MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRAIHLQDGVVVEDCIHK

Homology

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BLAST of MELO3C009928 vs. NCBI nr
Match: XP_008443479.1 (PREDICTED: uncharacterized protein LOC103487060 isoform X3 [Cucumis melo])

HSP 1 Score: 422.5 bits (1085), Expect = 2.0e-114
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS
Sbjct: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN 180
           GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN
Sbjct: 121 GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN 180

Query: 181 RNSDADALANRAIHLQDGVVVEDCIHK 208
           RNSDADALANRAIHLQDGVVVEDCIHK
Sbjct: 181 RNSDADALANRAIHLQDGVVVEDCIHK 207

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BLAST of MELO3C009928 vs. NCBI nr
Match: XP_008443477.1 (PREDICTED: uncharacterized protein LOC103487060 isoform X1 [Cucumis melo])

HSP 1 Score: 399.8 bits (1026), Expect = 1.4e-107
Identity = 207/255 (81.18%), Postives = 207/255 (81.18%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS
Sbjct: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGST------------------------------------- 180
           GASKGNPGLAGAGAILRANDGST                                     
Sbjct: 121 GASKGNPGLAGAGAILRANDGSTVCRLQEGVGIATCNVAEYRAIILGLKHALKNGIKHIY 180

Query: 181 -----------VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 208
                      VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA
Sbjct: 181 VQGDSKLVCMQVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 240

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BLAST of MELO3C009928 vs. NCBI nr
Match: XP_004147444.1 (uncharacterized protein LOC101219107 [Cucumis sativus] >KGN59631.1 hypothetical protein Csa_002359 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 5.6e-96
Identity = 187/255 (73.33%), Postives = 196/255 (76.86%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVV KGDVFGFYR+AKEL+T  GRFDP+ATIYKGYHLSKEAEEYLV+HGLQS
Sbjct: 1   MEGDKDAYYVVHKGDVFGFYRTAKELLTHPGRFDPDATIYKGYHLSKEAEEYLVAHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPS TRGKMAEEY KAERQERVL+NTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSATRGKMAEEYSKAERQERVLENTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGST------------------------------------- 180
           GASKGNPGLAGAGA+LRANDGST                                     
Sbjct: 121 GASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHALKNGIKHIR 180

Query: 181 -----------VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 208
                      VQGLWKLKN NMA+ CKVAKELKDKFVSFEISH PR +NSDADALAN A
Sbjct: 181 VQGDSKLVCMQVQGLWKLKNPNMAKFCKVAKELKDKFVSFEISHFPRKQNSDADALANCA 240

[Close]

BLAST of MELO3C009928 vs. NCBI nr
Match: TYK17758.1 (RNase H domain-containing family protein [Cucumis melo var. makuwa])

HSP 1 Score: 332.0 bits (850), Expect = 3.6e-87
Identity = 174/222 (78.38%), Postives = 174/222 (78.38%), Query Frame = 0


Query: 34  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 93
           DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK
Sbjct: 51  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 110

Query: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST---------- 153
           MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST          
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 170

Query: 154 --------------------------------------VQGLWKLKNQNMAELCKVAKEL 208
                                                 VQGLWKLKNQNMAELCKVAKEL
Sbjct: 171 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLWKLKNQNMAELCKVAKEL 230

[Close]

BLAST of MELO3C009928 vs. NCBI nr
Match: XP_008443478.1 (PREDICTED: uncharacterized protein Mb2253c isoform X2 [Cucumis melo])

HSP 1 Score: 332.0 bits (850), Expect = 3.6e-87
Identity = 174/222 (78.38%), Postives = 174/222 (78.38%), Query Frame = 0


Query: 34  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 93
           DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK
Sbjct: 2   DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 61

Query: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST---------- 153
           MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST          
Sbjct: 62  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 121

Query: 154 --------------------------------------VQGLWKLKNQNMAELCKVAKEL 208
                                                 VQGLWKLKNQNMAELCKVAKEL
Sbjct: 122 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLWKLKNQNMAELCKVAKEL 181

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BLAST of MELO3C009928 vs. ExPASy TrEMBL
Match: A0A1S3B873 (uncharacterized protein LOC103487060 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103487060 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 9.8e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS
Sbjct: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN 180
           GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN
Sbjct: 121 GASKGNPGLAGAGAILRANDGSTVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRN 180

Query: 181 RNSDADALANRAIHLQDGVVVEDCIHK 208
           RNSDADALANRAIHLQDGVVVEDCIHK
Sbjct: 181 RNSDADALANRAIHLQDGVVVEDCIHK 207

[Close]

BLAST of MELO3C009928 vs. ExPASy TrEMBL
Match: A0A1S3B7N6 (uncharacterized protein LOC103487060 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487060 PE=4 SV=1)

HSP 1 Score: 399.8 bits (1026), Expect = 6.8e-108
Identity = 207/255 (81.18%), Postives = 207/255 (81.18%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS
Sbjct: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGST------------------------------------- 180
           GASKGNPGLAGAGAILRANDGST                                     
Sbjct: 121 GASKGNPGLAGAGAILRANDGSTVCRLQEGVGIATCNVAEYRAIILGLKHALKNGIKHIY 180

Query: 181 -----------VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 208
                      VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA
Sbjct: 181 VQGDSKLVCMQVQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 240

[Close]

BLAST of MELO3C009928 vs. ExPASy TrEMBL
Match: A0A0A0LHV8 (RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829210 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 2.7e-96
Identity = 187/255 (73.33%), Postives = 196/255 (76.86%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGRFDPNATIYKGYHLSKEAEEYLVSHGLQS 60
           MEGDKDAYYVV KGDVFGFYR+AKEL+T  GRFDP+ATIYKGYHLSKEAEEYLV+HGLQS
Sbjct: 1   MEGDKDAYYVVHKGDVFGFYRTAKELLTHPGRFDPDATIYKGYHLSKEAEEYLVAHGLQS 60

Query: 61  ATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTYFLEFD 120
           ATYSISAANVTKDLFGKILPCFPYEQPS TRGKMAEEY KAERQERVL+NTEYTYFLEFD
Sbjct: 61  ATYSISAANVTKDLFGKILPCFPYEQPSATRGKMAEEYSKAERQERVLENTEYTYFLEFD 120

Query: 121 GASKGNPGLAGAGAILRANDGST------------------------------------- 180
           GASKGNPGLAGAGA+LRANDGST                                     
Sbjct: 121 GASKGNPGLAGAGAVLRANDGSTVCKLQEGVGIATCNVAEYRAVILGLKHALKNGIKHIR 180

Query: 181 -----------VQGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALANRA 208
                      VQGLWKLKN NMA+ CKVAKELKDKFVSFEISH PR +NSDADALAN A
Sbjct: 181 VQGDSKLVCMQVQGLWKLKNPNMAKFCKVAKELKDKFVSFEISHFPRKQNSDADALANCA 240

[Close]

BLAST of MELO3C009928 vs. ExPASy TrEMBL
Match: A0A5D3D2K9 (RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1804G00310 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 174/222 (78.38%), Postives = 174/222 (78.38%), Query Frame = 0


Query: 34  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 93
           DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK
Sbjct: 51  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 110

Query: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST---------- 153
           MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST          
Sbjct: 111 MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 170

Query: 154 --------------------------------------VQGLWKLKNQNMAELCKVAKEL 208
                                                 VQGLWKLKNQNMAELCKVAKEL
Sbjct: 171 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLWKLKNQNMAELCKVAKEL 230

[Close]

BLAST of MELO3C009928 vs. ExPASy TrEMBL
Match: A0A1S3B845 (uncharacterized protein Mb2253c isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487060 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 174/222 (78.38%), Postives = 174/222 (78.38%), Query Frame = 0


Query: 34  DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 93
           DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK
Sbjct: 2   DPNATIYKGYHLSKEAEEYLVSHGLQSATYSISAANVTKDLFGKILPCFPYEQPSTTRGK 61

Query: 94  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST---------- 153
           MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGST          
Sbjct: 62  MAEEYPKAERQERVLKNTEYTYFLEFDGASKGNPGLAGAGAILRANDGSTVCRLQEGVGI 121

Query: 154 --------------------------------------VQGLWKLKNQNMAELCKVAKEL 208
                                                 VQGLWKLKNQNMAELCKVAKEL
Sbjct: 122 ATCNVAEYRAIILGLKHALKNGIKHIYVQGDSKLVCMQVQGLWKLKNQNMAELCKVAKEL 181

[Close]

BLAST of MELO3C009928 vs. TAIR 10
Match: AT3G01410.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-37
Identity = 96/283 (33.92%), Postives = 136/283 (48.06%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGR--FDPNATIYKGYHLSKEAEEYLVSHGL 60
           ME +KDA+Y+V+KGD+ G YRS  E   Q G     P  ++YKGY   K AE+ L S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 61  QSATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTY--- 120
           ++A +S++A++V  D FGK++PC P +QPS+++G+   +   ++R + +      ++   
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPC-PVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPS 124

Query: 121 --------------------------------FLEFDGASKGNPGLAGAGAILRANDGST 180
                                            +EFDGASKGNPG AGAGA+LRA+D S 
Sbjct: 125 PPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSV 184

Query: 181 ------------------------------------------------VQGLWKLKNQNM 199
                                                           VQG WK  +  M
Sbjct: 185 LFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKM 244

[Close]

BLAST of MELO3C009928 vs. TAIR 10
Match: AT3G01410.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 151.4 bits (381), Expect = 8.1e-37
Identity = 96/283 (33.92%), Postives = 136/283 (48.06%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGR--FDPNATIYKGYHLSKEAEEYLVSHGL 60
           ME +KDA+Y+V+KGD+ G YRS  E   Q G     P  ++YKGY   K AE+ L S G+
Sbjct: 5   MEDEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGI 64

Query: 61  QSATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKNTEYTY--- 120
           ++A +S++A++V  D FGK++PC P +QPS+++G+   +   ++R + +      ++   
Sbjct: 65  KNALFSVNASHVKDDAFGKLIPC-PVQQPSSSQGESLNKSSPSKRLQDMGSGESGSFSPS 124

Query: 121 --------------------------------FLEFDGASKGNPGLAGAGAILRANDGST 180
                                            +EFDGASKGNPG AGAGA+LRA+D S 
Sbjct: 125 PPQKQLKIENDMLRRIPSSLLTRTPIRQNDSCTIEFDGASKGNPGKAGAGAVLRASDNSV 184

Query: 181 ------------------------------------------------VQGLWKLKNQNM 199
                                                           VQG WK  +  M
Sbjct: 185 LFYLREGVGNATNNVAEYRALLLGLRSALDKGFKNVHVLGDSMLVCMQVQGAWKTNHPKM 244

[Close]

BLAST of MELO3C009928 vs. TAIR 10
Match: AT1G24090.1 (RNase H family protein )

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-34
Identity = 92/275 (33.45%), Postives = 137/275 (49.82%), Query Frame = 0


Query: 1   MEGDKDAYYVVQKGDVFGFYRSAKELVTQHGR--FDPNATIYKGYHLSKEAEEYLVSHGL 60
           ++ +KDA++VV+KGDV G Y+   +   Q G   FD   ++YKGY L K+ EEYL S GL
Sbjct: 77  VDKEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGL 136

Query: 61  QSATYSISAANVTKDLFGKILPCFPYEQPSTTRGKMAEEYPKAERQERVLKN-------- 120
           +   YS+ A+++  D+FG + PC  +++P+    K++E+   +E + +  K         
Sbjct: 137 KKPLYSLRASDLKDDMFGALTPCL-FQEPAPCTVKVSEDETTSETKSKDDKKDQLPSASI 196

Query: 121 -----------------TEYTYFLEFDGASKGNPGLAGAGAILRANDGS----------- 180
                            ++ T F+EFDGASKGNPGL+GA A+L+  DGS           
Sbjct: 197 SYDPLEKLSKVEPSAYISDETCFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGI 256

Query: 181 -------------------------------------TVQGLWKLKNQNMAELCKVAKEL 201
                                                 ++G WK+ ++ +A+L K AK L
Sbjct: 257 ATNNAAEYHALILGLKYAIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLL 316

[Close]

BLAST of MELO3C009928 vs. TAIR 10
Match: AT5G51080.1 (RNase H family protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.4e-34
Identity = 91/251 (36.25%), Postives = 129/251 (51.39%), Query Frame = 0


Query: 4   DKDAYYVVQKGDVFGFYRSAKELVTQHGR--FDPNATIYKGYHLSKEAEEYLVSHGLQSA 63
           +KDA++VV+KGD+ G Y+   +   Q G   +DP  ++YKGY L K+ EE L + GL+  
Sbjct: 77  EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136

Query: 64  TYSISAANVTKDLFGKILPC-FPYEQPSTTRG--KMAEEYPKAERQERVLKNTEY-TYFL 123
            Y   A ++ +D+FG + PC F  + PS +    K+AE  P A+        T Y T  +
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQDQLPSASMSVEKLAELEPSAD--------TSYETCII 196

Query: 124 EFDGASKGNPGLAGAGAILRANDGSTV--------------------------------- 183
           EFDGASKGNPGL+GA A+L+  DGS +                                 
Sbjct: 197 EFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYT 256

Query: 184 ---------------QGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALA 201
                          +G WK+ ++ +++L K AK+L DK +SFEISHV R+ NSDAD  A
Sbjct: 257 KIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQA 316

[Close]

BLAST of MELO3C009928 vs. TAIR 10
Match: AT5G51080.2 (RNase H family protein )

HSP 1 Score: 141.4 bits (355), Expect = 8.4e-34
Identity = 91/251 (36.25%), Postives = 129/251 (51.39%), Query Frame = 0


Query: 4   DKDAYYVVQKGDVFGFYRSAKELVTQHGR--FDPNATIYKGYHLSKEAEEYLVSHGLQSA 63
           +KDA++VV+KGD+ G Y+   +   Q G   +DP  ++YKGY L K+ EE L + GL+  
Sbjct: 77  EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136

Query: 64  TYSISAANVTKDLFGKILPC-FPYEQPSTTRG--KMAEEYPKAERQERVLKNTEY-TYFL 123
            Y   A ++ +D+FG + PC F  + PS +    K+AE  P A+        T Y T  +
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQDQLPSASMSVEKLAELEPSAD--------TSYETCII 196

Query: 124 EFDGASKGNPGLAGAGAILRANDGSTV--------------------------------- 183
           EFDGASKGNPGL+GA A+L+  DGS +                                 
Sbjct: 197 EFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHAIEKGYT 256

Query: 184 ---------------QGLWKLKNQNMAELCKVAKELKDKFVSFEISHVPRNRNSDADALA 201
                          +G WK+ ++ +++L K AK+L DK +SFEISHV R+ NSDAD  A
Sbjct: 257 KIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNSDADEQA 316

The following BLAST results are available for this feature:

BLAST of MELO3C009928 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443479.1	2.0e-114	100.00	PREDICTED: uncharacterized protein LOC103487060 isoform X3 [Cucumis melo]	[more]
XP_008443477.1	1.4e-107	81.18	PREDICTED: uncharacterized protein LOC103487060 isoform X1 [Cucumis melo]	[more]
XP_004147444.1	5.6e-96	73.33	uncharacterized protein LOC101219107 [Cucumis sativus] >KGN59631.1 hypothetical ...	[more]
TYK17758.1	3.6e-87	78.38	RNase H domain-containing family protein [Cucumis melo var. makuwa]	[more]
XP_008443478.1	3.6e-87	78.38	PREDICTED: uncharacterized protein Mb2253c isoform X2 [Cucumis melo]	[more]

BLAST of MELO3C009928 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C009928 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B873	9.8e-115	100.00	uncharacterized protein LOC103487060 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3B7N6	6.8e-108	81.18	uncharacterized protein LOC103487060 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LHV8	2.7e-96	73.33	RNase H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G829210 PE=...	[more]
A0A5D3D2K9	1.7e-87	78.38	RNase H domain-containing family protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3B845	1.7e-87	78.38	uncharacterized protein Mb2253c isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034870...	[more]

BLAST of MELO3C009928 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01410.1	8.1e-37	33.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G01410.2	8.1e-37	33.92	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G24090.1	1.3e-34	33.45	RNase H family protein	[more]
AT5G51080.1	8.4e-34	36.25	RNase H family protein	[more]
AT5G51080.2	8.4e-34	36.25	RNase H family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 142..202 e-value: 8.8E-11 score: 43.8
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 143..192 e-value: 1.0E-7 score: 31.8
None	No IPR available	PANTHER	PTHR46387	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN	coord: 145..201 coord: 94..144
None	No IPR available	PANTHER	PTHR46387:SF14	PUTATIVE-RELATED	coord: 145..201 coord: 94..144
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 115..194

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009928.1	MELO3C009928.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity