MELO3C009343 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009343
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	29 kDa ribonucleoprotein, chloroplastic
Location	chr04: 31538461 .. 31540541 (+)
RNA-Seq Expression	MELO3C009343
Synteny	MELO3C009343

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCGGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTATTTTTCCTTCTGTTTTTTTGTGTGTTATCACGTGTTTATGTTTTCTCAAGAGACCCATTTGGTTTGCCCTAATTTTCTTGAAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGTAAGTCGCTTCATACACCCTGTTTATGCCAGCTTAATACTCTGCACCAATGGTTTTGGGCATGATTCATTTACTCCTTAAATGAAAAAGTAGGAAGTCATAGAGCTATCAAGTTTTGAACATCAAATTATCAACGAGCTCATTGTATTTAGAGAACTCATCGTAGTGATGTTCTCTTGCTCGGTCTTATTTCTTGGGGTAAAACGTATGTATAGATTATCTGCTTCCATGGTGTTTTTTGAGGCCAGTAGTTTCATAAATTCACCTCTGTGCTCCAATTACTTAGTGTTATCCTTCATTTTCAATCAAATCTCAGTATTGGATTTTCTTCTGGTTAATGATTCTTGGTCAACTTATTACAGGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACACGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGATGAACCTTGATATGTGCCCTCACGTTCAATTAAACCTTGCTTACTGAACTCAAGAGATAGACAACATTAAGGACCAATTGCTATAAAAATGAAATCCTCTTCATGTAATCAGGTTAACCATGATTTTGTTGTAGCATCTTTGCCTATATGAAATCCTCTTCATGTAATCAGATTAATTTTCAATTCATTCGAATACATTAATGACTCTTTTCGATTCGCTTCACTTGTTTTCTTCGTATATGTTCTTTTGTTGTTCCCATCTGTCTTGCGTGAAGTGATATTTCTTGTGGTGCAATGTTTTATCTCAGTTTATCATTTTTCTTTTCTTATAAAACTCATTTCATGCACGGTATTCCCCTCCGAAGTATGATTTGGAATCAAGCATCATTCATATATCTAAGTAAAAATGTATACATTGCAGGACTTGGTTGGAAGATCCATCCGAGTAACACAAGCCGAAGCAAAGCCGCCAAGGCGCCAGTTTTGAGTATCTGCAGCTTTTATTTATAAGGAATTAACGTGGTTTTTGAGCGCTCTTATATTAACCTTATTTTTCCATGGTCTGTTCTCCGATAGTAAATGGTGCTGAATGATTTACTGTACTTTTTCTCTTTGATCGATGATATTTGATATATTTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAAACCCACATATGTTGTGTCGTGCCCAAACTCATCAAGGCTGAGGCTACAATATCATTTTAAAGATATTATGCTTCCAACATGTAAAAGCAGGTGCTTGCAC

mRNA sequence

TTCGCCAACCTTATCTCAAAAACTCGGAAGCCATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCGGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACACGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGATGAACCTTGATATGTGCCCTCACGTTCAATTAAACCTTGCTTACTGAACTCAAGAGATAGACAACATTAAGGACCAATTGCTATAAAAATGAAATCCTCTTCATGTAATCAGGTTAACCATGATTTTGTTGTAGCATCTTTGCCTATATGAAATCCTCTTCATGTAATCAGATTAATTTTCAATTCATTCGAATACATTAATGACTCTTTTCGATTCGCTTCACTTGTTTTCTTCGTATATGTTCTTTTGTTGTTCCCATCTGTCTTGCGTGAAGTGATATTTCTTGTGGTGCAATGTTTTATCTCAGTTTATCATTTTTCTTTTCTTATAAAACTCATTTCATGCACGGTATTCCCCTCCGAAGTATGATTTGGAATCAAGCATCATTCATATATCTAAGTAAAAATGTATACATTGCAGGACTTGGTTGGAAGATCCATCCGAGTAACACAAGCCGAAGCAAAGCCGCCAAGGCGCCAGTTTTGAGTATCTGCAGCTTTTATTTATAAGGAATTAACGTGGTTTTTGAGCGCTCTTATATTAACCTTATTTTTCCATGGTCTGTTCTCCGATAGTAAATGGTGCTGAATGATTTACTGTACTTTTTCTCTTTGATCGATGATATTTGATATATTTTTTTTCTTCTAATTTTGCATTCAACTAAGATTAAAAACCCACATATGTTGTGTCGTGCCCAAACTCATCAAGGCTGAGGCTACAATATCATTTTAAAGATATTATGCTTCCAACATGTAAAAGCAGGTGCTTGCAC

Coding sequence (CDS)

ATGTCTGCCTCTGCGGCTTCTCTCACGCTCTCATCCCTAACCCTCAAAACTCTATCTTTGTCTAACCCTAAATTCAAACTCTTCTCTCTCAATCCTTCTTCTTCCATTCGCCTTCTCAATCCTATTTCCATTTCTTCTTTTGTTCTTCCTTCTCATAGGGTTTCTTCTCCTTTCTCCTCCCGCTTTGTTCGAAATGTCGCCGTCTCATCCGATTACGACCAGGAAGAAGACACTCTTGAGGCCGATGGAGACGACTCCGGCTACGCTCCTGACCTCAAACTGTTCGTCGGAAATCTTCCTTTCAGTGTCGATAGTGCTCAACTCGCCGGCTTATTCGAAAGCGCCGGACAAGTTGAAAGAGTCGAGGTAATTTATGACAAGACGACGGGAAAGAGCAGGGGATTTGGCTTTGTTACAATGTCGACTGTTGATGAGGTTGAAGCAGCTGCTCAACAATTTAATGGCTATGAACTCGATGGGAGATCACTAAGGGTAAACTATGGACCTCCACCGAAAAGGGACGATTCCCCTTTCAGAGGTTCTAGAAATGCTTCAAGATTTGACAACCGCAATCGGGTCCATGTGAGTAACCTTGCTTGGGGTGTTGACGATCTTACACTTGAGAACTTGTTTAGGGAACACGGAAATGTTTTGGAGGCAAAAGTAGTTTATGATCGTGATAGCGGAAGATCTAGGGGCTTCGGTTTCGTAACATATAATTCAGCGGAGGAAGTTAACAATGCCATTCAGTCCTTGAATGGAGTTGTAAGTTTACACCGACCTTTCATTCTTGTGCGTTTTTTTAGTCAGTTCTGCATTTGCTTATGA

Protein sequence

MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSSRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNGVVSLHRPFILVRFFSQFCICL

Homology

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BLAST of MELO3C009343 vs. NCBI nr
Match: XP_008442686.1 (PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK25133.1 29 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 491.5 bits (1264), Expect = 4.7e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 256
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

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BLAST of MELO3C009343 vs. NCBI nr
Match: XP_004137828.1 (29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetical protein Csa_002481 [Cucumis sativus])

HSP 1 Score: 447.2 bits (1149), Expect = 1.0e-121
Identity = 240/263 (91.25%), Postives = 245/263 (93.16%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDS YAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYG PPPKRDDS F
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLNGVVSLHRP 262
           YNSAEEVN AIQSL+GV    RP
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRP 263

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BLAST of MELO3C009343 vs. NCBI nr
Match: XP_038905951.1 (29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida])

HSP 1 Score: 435.3 bits (1118), Expect = 4.0e-118
Identity = 230/262 (87.79%), Postives = 243/262 (92.75%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLS+LTLKTLSLSNPK KLFSLNPSS+  L NP SISS VL S RVS PFSS
Sbjct: 1   MSASAASLTLSALTLKTLSLSNPKIKLFSLNPSSTRLLSNPSSISSVVLRSQRVSPPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEAD +++ YAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADANEASYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
           VEVIYDKTTG+SRGFGFVTMS+VDEVEAAAQQFNGYELDGRSLRVNYG PPP+RDDS FR
Sbjct: 121 VEVIYDKTTGRSRGFGFVTMSSVDEVEAAAQQFNGYELDGRSLRVNYGPPPPRRDDSSFR 180

Query: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
           GSRNASRFDN NRVHVSNLAWGVDDLTLENLFREHGNV+EAKVVYDR+SG+SRGFGFVT+
Sbjct: 181 GSRNASRFDNPNRVHVSNLAWGVDDLTLENLFREHGNVVEAKVVYDRESGKSRGFGFVTF 240

Query: 241 NSAEEVNNAIQSLNGVVSLHRP 262
           NSAEEVNNAIQSL+G     RP
Sbjct: 241 NSAEEVNNAIQSLDGAELSGRP 262

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BLAST of MELO3C009343 vs. NCBI nr
Match: XP_022935639.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646.1 29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 396.4 bits (1017), Expect = 2.1e-106
Identity = 211/256 (82.42%), Postives = 226/256 (88.28%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 256
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343 vs. NCBI nr
Match: XP_023538708.1 (29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 395.2 bits (1014), Expect = 4.6e-106
Identity = 211/256 (82.42%), Postives = 225/256 (87.89%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFGLFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 256
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.8e-74
Identity = 171/267 (64.04%), Postives = 195/267 (73.03%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KFKLFSLNPSSSIRLLNPISISSFVLPSHRVS 60
           M++SA+SL   SLT +TL L  P         FSL PSS    LN +S+SS        S
Sbjct: 1   MASSASSLHFLSLTPQTLPLPKPTSQTTSLSFFSLPPSS----LN-LSLSS-------SS 60

Query: 61  SPFSSRFVRNVAVSSDYDQEEDTLEADGDDS-----GYAPDLKLFVGNLPFSVDSAQLAG 120
           S FSSRFVR V + SD+DQ ED    DGDD       ++PDLK+FVGNLPFS DSA LA 
Sbjct: 61  SCFSSRFVRKVTL-SDFDQIEDV--EDGDDGVEEERNFSPDLKIFVGNLPFSADSAALAE 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPP 180
           LFE AG VE VEVIYDK TG+SRGFGFVTMS+ +EVEAA QQFNGYELDGR+LRVN GPP
Sbjct: 121 LFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPP 180

Query: 181 P-KRDDSPFR-GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDS 240
           P KR++S FR GSR    FD+ NRV+V NLAWGVD   LE LF E G V++AKVVYDRDS
Sbjct: 181 PEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDS 240

Query: 241 GRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           GRSRGFGFVTY+SAEEVNNAI+SL+GV
Sbjct: 241 GRSRGFGFVTYSSAEEVNNAIESLDGV 252

[Close]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot
Match: P49313 (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.3e-71
Identity = 166/271 (61.25%), Postives = 193/271 (71.22%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNP-----KFKLFSLNPSSSIRLLNPISISSFVLPSHRVS 60
           M++SA+SL   SLT +TL L  P         FSL PSS    LN +S+SS        S
Sbjct: 1   MASSASSLHFLSLTPQTLLLPKPTSQTTSLSFFSLPPSS----LN-LSLSS-------PS 60

Query: 61  SPFSSRFVRNVAVSSDYDQEEDTLEAD---GDDSGYAPDLKLFVGNLPFSVDSAQLAGLF 120
           S FSSRFVR V +  D+DQ ED  + D    ++  ++PDLK+FVGNL FS DSA LA LF
Sbjct: 61  SCFSSRFVRKVTL-PDFDQIEDVEDGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPP- 180
           E AG VE VEVIYDK TG+SRGFGFVTMS+ +EVEAA QQFNGYELDGR+LRVN GPPP 
Sbjct: 121 ERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE 180

Query: 181 KRDDSPFR-------GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVY 240
           KR++S FR       GSR    FD+ NRV+V NLAWGVD   LE LF E G V++AKVVY
Sbjct: 181 KRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVY 240

Query: 241 DRDSGRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           DRDSGRSRGFGFVTY+SAEEVNNAI+SL+GV
Sbjct: 241 DRDSGRSRGFGFVTYSSAEEVNNAIESLDGV 258

[Close]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot
Match: Q9ZUU4 (RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29B PE=1 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 7.2e-70
Identity = 160/278 (57.55%), Postives = 196/278 (70.50%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVS----- 60
           M+ASA+SL LSS         NPK   F ++  +S+ LL+P    SF L S  VS     
Sbjct: 1   MAASASSLALSSF--------NPKSLPFGVSRPASVSLLSP--SLSFKLNSDSVSFSIAA 60

Query: 61  ---SPFSSRFVRNVAVSSDYDQEEDTLE--ADGDDSGYAPDLKLFVGNLPFSVDSAQLAG 120
              SP +SRF RNVA++S+++ EED     A   +  ++ DLKLFVGNLPF+VDSAQLA 
Sbjct: 61  KWNSP-ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQ 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-P 180
           LFESAG VE VEVIYDK TG+SRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN G P
Sbjct: 121 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 180

Query: 181 PPKRDDSPFRGSRNA-------------SRFDNRNRVHVSNLAWGVDDLTLENLFREHGN 240
           PPKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF E G 
Sbjct: 181 PPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGK 240

Query: 241 VLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNG 255
           V+EA+V+YDRDSGRS+GFGFVTY+S++EV NAI+SL+G
Sbjct: 241 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot
Match: Q43349 (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A PE=2 SV=2)

HSP 1 Score: 255.4 bits (651), Expect = 7.5e-67
Identity = 161/321 (50.16%), Postives = 194/321 (60.44%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------GYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS       ++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSRNASRFDNR----------------------------------------- 240
           KR++S  RG R+      R                                         
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 -----------------NRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRG 255
                            NR++V NL+WGVDD+ LENLF E G V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot
Match: P49314 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=2 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 9.8e-67
Identity = 156/277 (56.32%), Postives = 188/277 (67.87%), Query Frame = 0


Query: 2   SASAASLTLSSLTLKTLSLSNPKFKL--FSLNPSSSIRLLNPISISSFVLPSHRVSSPFS 61
           S+S +SL    +T +T S   P   L  FSL PSSS+ L    S+SS  +       PF 
Sbjct: 3   SSSVSSLQFLFVTSQTPSSLKPNSTLSFFSL-PSSSLNL----SLSSSSIGHSASIKPFE 62

Query: 62  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 121
           S F   VA+ SD+DQ ED +E   +   ++ DLKLFVGNLPFSVDSA LAGLFE AG VE
Sbjct: 63  SSFSTRVAL-SDFDQLEDDVEV-AEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVE 122

Query: 122 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGP-PPKRDDSPF 181
            VEVIYDK +G+SRGFGFVTMST +EVEAA QQFNGYE+DGR++RVN GP P KR++S F
Sbjct: 123 IVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 182

Query: 182 RGSRNAS--------------------RFDNRNRVHVSNLAWGVDDLTLENLFREHGNVL 241
            G R  +                      D+ NRV+V NL+WGVDDL L+ LF E GNV+
Sbjct: 183 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 242

Query: 242 EAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNGV 256
           +AKVVYDRDSGRSRGFGFVTY+SA+EVN+AI SLNG+
Sbjct: 243 DAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGI 272

[Close]

BLAST of MELO3C009343 vs. ExPASy TrEMBL
Match: A0A5A7TQA3 (29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002580 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 256
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

[Close]

BLAST of MELO3C009343 vs. ExPASy TrEMBL
Match: A0A1S3B5S7 (29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 PE=4 SV=1)

HSP 1 Score: 491.5 bits (1264), Expect = 2.3e-135
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS
Sbjct: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180
           VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG
Sbjct: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYGPPPKRDDSPFRG 180

Query: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240
           SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN
Sbjct: 181 SRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTYN 240

Query: 241 SAEEVNNAIQSLNGV 256
           SAEEVNNAIQSLNGV
Sbjct: 241 SAEEVNNAIQSLNGV 255

[Close]

BLAST of MELO3C009343 vs. ExPASy TrEMBL
Match: A0A0A0LAY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 4.9e-122
Identity = 240/263 (91.25%), Postives = 245/263 (93.16%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLL-NPISISSFVLPSHRVSSPFS 60
           MSASAASLTL SLTLKTLS SNPKFKLFSLNPSSSIRLL NPISISSF+LPSHRVS PFS
Sbjct: 1   MSASAASLTLPSLTLKTLSSSNPKFKLFSLNPSSSIRLLSNPISISSFLLPSHRVSPPFS 60

Query: 61  SRFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVE 120
           SRFVRNVAVSSDY QEE TLE DGDDS YAPDLKLFVGNLPF+VDSAQLAGLFESAGQVE
Sbjct: 61  SRFVRNVAVSSDYGQEEGTLEVDGDDSSYAPDLKLFVGNLPFTVDSAQLAGLFESAGQVE 120

Query: 121 RVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPF 180
           RVEVIYDKTTG+SRGFGFVTMSTV EVEAAAQQFNGYELDGR LRVNYG PPPKRDDS F
Sbjct: 121 RVEVIYDKTTGRSRGFGFVTMSTVGEVEAAAQQFNGYELDGRLLRVNYGPPPPKRDDSSF 180

Query: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVT 240
           RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFRE GNVLEAKVVYDRDSG+SRGFGFVT
Sbjct: 181 RGSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREKGNVLEAKVVYDRDSGKSRGFGFVT 240

Query: 241 YNSAEEVNNAIQSLNGVVSLHRP 262
           YNSAEEVN AIQSL+GV    RP
Sbjct: 241 YNSAEEVNEAIQSLDGVDLDGRP 263

[Close]

BLAST of MELO3C009343 vs. ExPASy TrEMBL
Match: A0A6J1F601 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442435 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.0e-106
Identity = 211/256 (82.42%), Postives = 226/256 (88.28%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  LTLSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ VL S RVS  F S
Sbjct: 1   MAASATFLTLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVLRSDRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVNYG PPPKRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNYGPPPPKRDDSSFR 180

Query: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 256
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343 vs. ExPASy TrEMBL
Match: A0A6J1KUB7 (29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498740 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.4e-105
Identity = 209/256 (81.64%), Postives = 224/256 (87.50%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSPFSS 60
           M+ASA  L LSSLT KTLS SNPKF+LFSLNPSS     NPISIS+ V  SHRVS  F S
Sbjct: 1   MAASATFLPLSSLTPKTLSFSNPKFELFSLNPSSIGFRSNPISISALVFRSHRVSPAFFS 60

Query: 61  RFVRNVAVSSDYDQEEDTLEADGDDSGYAPDLKLFVGNLPFSVDSAQLAGLFESAGQVER 120
           RFVRNVAVSSD+DQEED L+ DGDDS YAPDL+LFVGNLPF++DSAQLAGLFESAGQVER
Sbjct: 61  RFVRNVAVSSDFDQEEDVLDVDGDDSSYAPDLQLFVGNLPFTIDSAQLAGLFESAGQVER 120

Query: 121 VEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPPKRDDSPFR 180
           VEVIYDK TG+SRGFGFVTMS V E EAAAQQFNGYEL+GR LRVN G PPPKRDDS FR
Sbjct: 121 VEVIYDKMTGRSRGFGFVTMSNVAEAEAAAQQFNGYELEGRPLRVNCGPPPPKRDDSSFR 180

Query: 181 GSRNASRFDNRNRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRGFGFVTY 240
            S+NAS FDN N VHVSNLAWGVDDLTLENLFRE GNV++AKVVYDRDSGRSRGFGFVTY
Sbjct: 181 SSKNASTFDNSNCVHVSNLAWGVDDLTLENLFREQGNVVKAKVVYDRDSGRSRGFGFVTY 240

Query: 241 NSAEEVNNAIQSLNGV 256
           +SAEEVNNAIQSL+GV
Sbjct: 241 SSAEEVNNAIQSLDGV 256

[Close]

BLAST of MELO3C009343 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 265.4 bits (677), Expect = 5.1e-71
Identity = 160/278 (57.55%), Postives = 196/278 (70.50%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVS----- 60
           M+ASA+SL LSS         NPK   F ++  +S+ LL+P    SF L S  VS     
Sbjct: 1   MAASASSLALSSF--------NPKSLPFGVSRPASVSLLSP--SLSFKLNSDSVSFSIAA 60

Query: 61  ---SPFSSRFVRNVAVSSDYDQEEDTLE--ADGDDSGYAPDLKLFVGNLPFSVDSAQLAG 120
              SP +SRF RNVA++S+++ EED     A   +  ++ DLKLFVGNLPF+VDSAQLA 
Sbjct: 61  KWNSP-ASRFARNVAITSEFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQ 120

Query: 121 LFESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-P 180
           LFESAG VE VEVIYDK TG+SRGFGFVTMS+V EVEAAAQQFNGYELDGR LRVN G P
Sbjct: 121 LFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPP 180

Query: 181 PPKRDDSPFRGSRNA-------------SRFDNRNRVHVSNLAWGVDDLTLENLFREHGN 240
           PPKR+D   RG R++             S   + NRV+V NL+WGVDD+ LE+LF E G 
Sbjct: 181 PPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGK 240

Query: 241 VLEAKVVYDRDSGRSRGFGFVTYNSAEEVNNAIQSLNG 255
           V+EA+V+YDRDSGRS+GFGFVTY+S++EV NAI+SL+G
Sbjct: 241 VVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267

[Close]

BLAST of MELO3C009343 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 255.4 bits (651), Expect = 5.3e-68
Identity = 161/321 (50.16%), Postives = 194/321 (60.44%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------GYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS       ++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSRNASRFDNR----------------------------------------- 240
           KR++S  RG R+      R                                         
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 -----------------NRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRG 255
                            NR++V NL+WGVDD+ LENLF E G V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 255.4 bits (651), Expect = 5.3e-68
Identity = 161/321 (50.16%), Postives = 194/321 (60.44%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------GYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS       ++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSRNASRFDNR----------------------------------------- 240
           KR++S  RG R+      R                                         
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 -----------------NRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRG 255
                            NR++V NL+WGVDD+ LENLF E G V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343 vs. TAIR 10
Match: AT3G53460.3 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 255.4 bits (651), Expect = 5.3e-68
Identity = 161/321 (50.16%), Postives = 194/321 (60.44%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------GYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS       ++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGYELDGRSLRVNYG-PPP 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGYE +GR LRVN G PPP
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPP 180

Query: 181 KRDDSPFRGSRNASRFDNR----------------------------------------- 240
           KR++S  RG R+      R                                         
Sbjct: 181 KREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQ 240

Query: 241 -----------------NRVHVSNLAWGVDDLTLENLFREHGNVLEAKVVYDRDSGRSRG 255
                            NR++V NL+WGVDD+ LENLF E G V+EA+V+YDRDSGRS+G
Sbjct: 241 RSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKG 300

[Close]

BLAST of MELO3C009343 vs. TAIR 10
Match: AT3G53460.4 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 243.0 bits (619), Expect = 2.7e-64
Identity = 161/342 (47.08%), Postives = 194/342 (56.73%), Query Frame = 0


Query: 1   MSASAASLTLSSLTLKTLSLSNPKFKLFSLNPSSSIRLLNPISISSFVLPSHRVSSP--F 60
           MSASA+SL+  +     L +S P   +  L PS S +L +   +S F   + + SSP  +
Sbjct: 1   MSASASSLSAFNPKSLPLCVSRPA-SVSVLPPSLSFKLHSDHLVSIFASSALKCSSPAEY 60

Query: 61  SSRFVRNVAVSSDYDQEEDTLEADGDDS------GYAPDLKLFVGNLPFSVDSAQLAGLF 120
            SRFVRNVAVSSD++ EED + ADGDDS       ++PDLKLFVGNL F+VDSAQLA LF
Sbjct: 61  PSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLF 120

Query: 121 ESAGQVERVEVIYDKTTGKSRGFGFVTMSTVDEVEAAAQQFNGY---------------- 180
           ESAG VE VEVIYDK TG+SRGFGFVTMST  EVEAAAQQFNGY                
Sbjct: 121 ESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYVSRYLCSLLCLYLLIR 180

Query: 181 -----ELDGRSLRVNYG-PPPKRDDSPFRGSRNASRFDNR-------------------- 240
                E +GR LRVN G PPPKR++S  RG R+      R                    
Sbjct: 181 VLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGSERGGGYGSERGGGY 240

Query: 241 --------------------------------------NRVHVSNLAWGVDDLTLENLFR 255
                                                 NR++V NL+WGVDD+ LENLF 
Sbjct: 241 GSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNLSWGVDDMALENLFN 300

The following BLAST results are available for this feature:

BLAST of MELO3C009343 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442686.1	4.7e-135	100.00	PREDICTED: 29 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0044007.1 ...	[more]
XP_004137828.1	1.0e-121	91.25	29 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN58963.1 hypothetic...	[more]
XP_038905951.1	4.0e-118	87.79	29 kDa ribonucleoprotein A, chloroplastic [Benincasa hispida]	[more]
XP_022935639.1	2.1e-106	82.42	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita moschata] >XP_022935646....	[more]
XP_023538708.1	4.6e-106	82.42	29 kDa ribonucleoprotein, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C009343 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q08935	2.8e-74	64.04	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]
P49313	1.3e-71	61.25	30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]
Q9ZUU4	7.2e-70	57.55	RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29...	[more]
Q43349	7.5e-67	50.16	29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP29A...	[more]
P49314	9.8e-67	56.32	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia OX=4092 PE=...	[more]

BLAST of MELO3C009343 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQA3	2.3e-135	100.00	29 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3B5S7	2.3e-135	100.00	29 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486484 ...	[more]
A0A0A0LAY6	4.9e-122	91.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740070 PE=4 SV=1	[more]
A0A6J1F601	1.0e-106	82.42	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1KUB7	1.4e-105	81.64	29 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of MELO3C009343 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37220.1	5.1e-71	57.55	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	5.3e-68	50.16	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	5.3e-68	50.16	chloroplast RNA-binding protein 29	[more]
AT3G53460.3	5.3e-68	50.16	chloroplast RNA-binding protein 29	[more]
AT3G53460.4	2.7e-64	47.08	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 192..265 e-value: 4.1E-20 score: 82.8 coord: 93..166 e-value: 5.1E-28 score: 109.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 94..164 e-value: 8.9E-20 score: 70.3 coord: 194..255 e-value: 1.2E-15 score: 57.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 191..270 score: 15.664418
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 92..170 score: 19.518938
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 64..189 e-value: 5.7E-30 score: 106.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 190..267 e-value: 7.5E-20 score: 73.0
None	No IPR available	PANTHER	PTHR48025:SF1	29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC	coord: 1..258
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..258
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 93..166 e-value: 6.32896E-34 score: 116.174
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 91..266

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009343.1	MELO3C009343.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding