MELO3C009049.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C009049.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionDNA/RNA polymerases superfamily protein
Locationchr08: 18821073 .. 18821579 (-)
RNA-Seq ExpressionMELO3C009049.jh1
SyntenyMELO3C009049.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATGAAAGTATAGAGGAAGTTTCATTTAGCTCCAAGTTTGAATTTCTTCTTCCTTCTAACTCCATCCCAAGCACGCAAAGGAACAATAAGTTGTCTAAAAGGCTGTTCAATCATCTTCATCAGAGGCCAACAACAATGCACCGGAAATGTAAACCAACGTCAATTTCTGGGAAGTCTCCTCCTCAACCTCCAGCTATTGGTAGCTCCGTTGGTAAACAGATGGCAGAAGACAAACGAAAGTCAGAGAATTCCAAAAGACGTTCAAAATCAGAACCACCAATCAAGAGAGGCTTAGTTTCCCCACCAAAGGAGACTTCTTTTAATTGTATTCCATTTGAAAAGTCACTTGAAGGAGTCCAACAGTCACATATTTGCAGCAATAAAGATATTAATTATGCTGTTTCTAAGAACAAGAAAGCCAACAAGACATTAACCACCACGAAGGCCAATAATAAATTCAGATGGGAGTTGCATTTAAACCGCAAGAAAACGAGGAGATGA

mRNA sequence

ATGAAGGATGAAAGTATAGAGGAAGTTTCATTTAGCTCCAAGTTTGAATTTCTTCTTCCTTCTAACTCCATCCCAAGCACGCAAAGGAACAATAAGTTGTCTAAAAGGCTGTTCAATCATCTTCATCAGAGGCCAACAACAATGCACCGGAAATGTAAACCAACGTCAATTTCTGGGAAGTCTCCTCCTCAACCTCCAGCTATTGGTAGCTCCGTTGGTAAACAGATGGCAGAAGACAAACGAAAGTCAGAGAATTCCAAAAGACGTTCAAAATCAGAACCACCAATCAAGAGAGGCTTAGTTTCCCCACCAAAGGAGACTTCTTTTAATTGTATTCCATTTGAAAAGTCACTTGAAGGAGTCCAACAGTCACATATTTGCAGCAATAAAGATATTAATTATGCTGTTTCTAAGAACAAGAAAGCCAACAAGACATTAACCACCACGAAGGCCAATAATAAATTCAGATGGGAGTTGCATTTAAACCGCAAGAAAACGAGGAGATGA

Coding sequence (CDS)

ATGAAGGATGAAAGTATAGAGGAAGTTTCATTTAGCTCCAAGTTTGAATTTCTTCTTCCTTCTAACTCCATCCCAAGCACGCAAAGGAACAATAAGTTGTCTAAAAGGCTGTTCAATCATCTTCATCAGAGGCCAACAACAATGCACCGGAAATGTAAACCAACGTCAATTTCTGGGAAGTCTCCTCCTCAACCTCCAGCTATTGGTAGCTCCGTTGGTAAACAGATGGCAGAAGACAAACGAAAGTCAGAGAATTCCAAAAGACGTTCAAAATCAGAACCACCAATCAAGAGAGGCTTAGTTTCCCCACCAAAGGAGACTTCTTTTAATTGTATTCCATTTGAAAAGTCACTTGAAGGAGTCCAACAGTCACATATTTGCAGCAATAAAGATATTAATTATGCTGTTTCTAAGAACAAGAAAGCCAACAAGACATTAACCACCACGAAGGCCAATAATAAATTCAGATGGGAGTTGCATTTAAACCGCAAGAAAACGAGGAGATGA

Protein sequence

MKDESIEEVSFSSKFEFLLPSNSIPSTQRNNKLSKRLFNHLHQRPTTMHRKCKPTSISGKSPPQPPAIGSSVGKQMAEDKRKSENSKRRSKSEPPIKRGLVSPPKETSFNCIPFEKSLEGVQQSHICSNKDINYAVSKNKKANKTLTTTKANNKFRWELHLNRKKTRR
Homology
BLAST of MELO3C009049.jh1 vs. NCBI nr
Match: KAE8653570.1 (hypothetical protein Csa_007659, partial [Cucumis sativus])

HSP 1 Score: 205 bits (521), Expect = 2.29e-64
Identity = 114/154 (74.03%), Postives = 123/154 (79.87%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRN-NKLSKRLFNHLHQRPTTMHRKCKPTSISG 60
           MKDE  EEVSFSS FE LLP+NSIP TQRN +KLS+RL NHLHQR T+ H KCK +S SG
Sbjct: 9   MKDEGFEEVSFSSNFELLLPANSIPRTQRNPHKLSERLLNHLHQRSTSTHWKCKASSDSG 68

Query: 61  KSPPQPPAIGSSVGKQMAEDKRKSENSKRRSKSEPPIKRGLVSPPKETSFNCIPFEKSLE 120
           KSPP PPAIGSSV  QMAE K KSEN K  SKSE P +RGLV PPK+TSFNCIPFEKSLE
Sbjct: 69  KSPPHPPAIGSSVSNQMAEFKWKSENFKSCSKSESPFRRGLVFPPKKTSFNCIPFEKSLE 128

Query: 121 GVQQSHICSNKDINYAVSKNKKANKTLTTTKANN 153
           G QQSHICS KD    VS+NK ANK+L TTKANN
Sbjct: 129 GFQQSHICSTKDNINVVSRNKSANKSLITTKANN 162

BLAST of MELO3C009049.jh1 vs. NCBI nr
Match: KAE8649297.1 (hypothetical protein Csa_015271, partial [Cucumis sativus])

HSP 1 Score: 201 bits (511), Expect = 1.26e-61
Identity = 111/153 (72.55%), Postives = 122/153 (79.74%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRN-NKLSKRLFNHLHQRPTTMHRKCKPTSISG 60
           MK+E  EEVS SS FE +LP+NSIPSTQRN +KLS+RL NHLHQR T+ HRKCK +S SG
Sbjct: 108 MKNEGFEEVSISSNFELILPANSIPSTQRNPHKLSERLLNHLHQRSTSTHRKCKASSDSG 167

Query: 61  KSPPQPPAIGSSVGKQMAEDKRKSENSKRRSKSEPPIKRGLVSPPKETSFNCIPFEKSLE 120
           KSPP PP IGSSVG Q+AE K KSEN KRRSKSE P +R LV PPKETSFNCIPFEKSLE
Sbjct: 168 KSPPHPPVIGSSVGNQIAEIKWKSENFKRRSKSESPFRRALVFPPKETSFNCIPFEKSLE 227

Query: 121 GVQQSHICSNKDINYAVSKNKKANKTLTTTKAN 152
           G QQSHICS KD    VS+NK A K+L  TKAN
Sbjct: 228 GFQQSHICSIKDNINVVSRNKSAKKSLIITKAN 260

BLAST of MELO3C009049.jh1 vs. NCBI nr
Match: KAE8649313.1 (hypothetical protein Csa_014975, partial [Cucumis sativus])

HSP 1 Score: 159 bits (402), Expect = 3.01e-45
Identity = 100/155 (64.52%), Postives = 111/155 (71.61%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRNN-KLSKRLFNHLHQRPTTMHRKCKPTSISG 60
           MKDE  EE SFSSKF++LLPSNSIPSTQRN  + S+RLF  L Q+P    R C  +S SG
Sbjct: 9   MKDEGFEEDSFSSKFDYLLPSNSIPSTQRNPYESSERLFKLLQQKPIPSLRNCNASSDSG 68

Query: 61  KSPPQPPAIGSSVGKQMAEDKRKSENSKRRSKSEPPIKRGLVSPPKETSFNCIPFEKSLE 120
            S  Q PA  SSV KQ AED RKSENSK RSKSEPPI+R    PPKETSFN IPF+KSL 
Sbjct: 69  NSSLQHPANVSSVSKQWAEDNRKSENSKSRSKSEPPIRRNSAFPPKETSFNFIPFKKSLV 128

Query: 121 GVQQSHICSNKDINYAVSKNKKANKTLTTTKANNK 154
           G QQS  CSNKD N  VS  K A+K L +TKAN+K
Sbjct: 129 GDQQSLTCSNKD-NSNVSMIKSASKNLISTKANDK 162

BLAST of MELO3C009049.jh1 vs. NCBI nr
Match: KAE8646831.1 (hypothetical protein Csa_018324 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 1.16e-09
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRNN-KLSKRLFNHLHQRP 45
           MKD+   E SFSSKF++LLPSNSIPSTQRN  +LS+RLF HLHQRP
Sbjct: 82  MKDKGFGEGSFSSKFDYLLPSNSIPSTQRNPYELSERLFKHLHQRP 127

BLAST of MELO3C009049.jh1 vs. NCBI nr
Match: KAA0031952.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.04e-05
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRNN-KLSKRLFNHLHQRP 45
           MKDE + +V  + KF++LLPSNSIPS QRN  +LS+RLF HL QRP
Sbjct: 261 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRP 306

BLAST of MELO3C009049.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SLN9 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00330 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.02e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRNN-KLSKRLFNHLHQRP 45
           MKDE + +V  + KF++LLPSNSIPS QRN  +LS+RLF HL QRP
Sbjct: 261 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRP 306

BLAST of MELO3C009049.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.08e-06
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 0

Query: 1   MKDESIEEVSFSSKFEFLLPSNSIPSTQRNN-KLSKRLFNHLHQRP 45
           MKDE + +V  + KF++LLPSNSIPS QRN  +LS+RLF HL QRP
Sbjct: 276 MKDEGLRKVHLAPKFDYLLPSNSIPSMQRNPYELSERLFKHLRQRP 321

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653570.12.29e-6474.03hypothetical protein Csa_007659, partial [Cucumis sativus][more]
KAE8649297.11.26e-6172.55hypothetical protein Csa_015271, partial [Cucumis sativus][more]
KAE8649313.13.01e-4564.52hypothetical protein Csa_014975, partial [Cucumis sativus][more]
KAE8646831.11.16e-0973.91hypothetical protein Csa_018324 [Cucumis sativus][more]
KAA0031952.11.04e-0563.04Retrotransposable element Tf2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SLN95.02e-0663.04Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5D3CZ355.08e-0663.04DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..95
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C009049.jh1.t1MELO3C009049.jh1.t1mRNA