MELO3C008876.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008876.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionMediator of RNA polymerase II transcription subunit 11
Locationchr08: 24011912 .. 24019302 (+)
RNA-Seq ExpressionMELO3C008876.jh1
SyntenyMELO3C008876.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCTAAACAAAATTACTCTCACCACACCCATTAATCCACCGCGGTTGCCGCTCGTTCCCTTATAGCCGTCGTCGAACATCCAGTCCAGTTACCATCAGTCCACTCGCGTCGTTTAGGTTCTTCTCGTCGTTTTTTGCTGAGGTAAGCTCAAAACATGGTTAAATCTTTTGTTTTTACTTTAACAAAGCGTGAGATGAATACTCTGTGTACAAACAACACAATAAATGAAGCTTTGAAATGTGGGTATTTCAAGCTTTGTTATGTTCATTAAGAATCTTCAATTTCACTAATTTTACTTTTAACTCTCTAATTTCAGTTTTAATTTCACTAGTTTTCTTGATCTTCTTGAAGTTTTATTTTCTTTTGCTATGTATTGATTTGGGGTTGAAGAATTTAGTGTTTGTGTATTTTTTAGTTGTCAAATGCAAATTATCTGTGTACGTTTTTGATTGGTTCATTTTATATACATTTGGACTATTTTCAACTCTGGTAAACAATGCACTACTATTGAAAAACTTATTTGAAAATTTTTAGGTTGACACTTAGATATTTATAAGTTGATTTGAGAGGTAAACTTCCACTTATACAATCTTTAGAAACTTTTTAGGTTGTTAATCAAAGTGAATGTCATGAACCATTCACTTGTGTACTTTATAGGTTTGTTTTTAAGTTGGTTTGATAGTCAAAGAGGCACTTAGACACTTCTTAGGTAGTTTTTAAGTTGGTTTGAGGGTGAAATTGTTGTTGAAGTAATTTTGAGACTTGAAATGCTACTTTCACACATTTTAAAAACCTTTTAGGTTGGCATTGAGTTTGAAAGTCAAACTTAGGAATTTTTAGGTTGGTTTTGGTTTTCACCTTGAAAGTCTCATTTAGGCATTTTAAAGATACGTTGATAGTTAAAGTAACACTTAGACACTTATTGGGTACTTTTTAGATTGATTTGAAAGTAAAATTGATATTTTGAAGTAATATTTGAGATTTGGAGTGCTACTTTCACAAAAGCCCATGGGATGTCTCGAATCCGAAGCAGCCACCAAGCAAATCCCTAACCCAAGTTGGAGTGCCCGAATCCAACCCTAGCCTGCCCGATTTCCTTCCGTTCTTTTCCTCTATGTAGATCATCCTACCGTTTCCCAGATTTCCGACCACAAACACCTTCCTATCTATTTTGAACTTTCCCATCTTGTAGCTTTCCTTACAGTTTTTGAGAGAAAAGTTAGAGAGAGAATAGGGAATCTACTTTTTTGAGGATCTATATTGTTCGTCGTTAATGCCTTCACAATCTATTGGATGTGGCAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGGTTTGTTTACCATTTTTAAATTTTTAATTTTGTTCAAAAGATTAGTTTGTTTAAATTTCTTATTGCTATGTGATTTATCACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGGTTGGAATTACTTTCAACATCACAAACGTTTTGTTTCTAGTTCTTTGCATGGTCTTTATTGCAGCACGGTGTTGATATAATTTTTTGGCCAACATTTGTGTTTCATTCCTGCAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGTGAGCCCTCTGTTTAGATAGGTTTATTTTGCGTTGGGAGTCTGTGTTTAATGACGTTTGTACTTATTCAGTGGGTTTCATTCTTAATCGTTTTATTTCTCAATACGTTAGGATCTGTTGGTTCCTTCTGTGCTGCCACTTTTGTATGTCGAACTTTTTCTCTGTTGCAATTGTTTATTTATTTATTTTTATTTTGGTCGACCCTACTTTCTCCCATTTCTTTTCTCTCCATGAAAGTACGGTTTCTTCAGGGAAGTCACTTTTGTACGTAAATTTGAAAGTTTGGTTCTTTGATTCAATGATCTTTCAAGTTTTTAGGTTTAAGGGCTCTAGCAAACATCCTTGAACTATTATTGCTTGAGGTTTTCCCTAGTTTTCTTTTTCTGTTTCCTTTTTTTCTTTTTATAAAAGGTTTTCCTTTGTTTTCTTAGTTTGTTAACTGTTTGATGGGGGATAGTGCTAACCGTTAGAATTAGTGGGCTTGGCCCTTAGAGGAGTATTTATGGAAAGATTATGGGAAGACTTACCCTATTTCCTAAATGTTTTCCTTTCTTATTCTATTGTGTATTCTATTTATTCTCCCTTAGTGTACCTATAATTTATCAGAAAATAGTAAAACAACAATATCGTGGTTTTCCTCCTAGTACTCGAGTTTCCACGTAAGTCTTGGTTTTGTGTTTATTGCTTTTAATATGGTATTAGAGCAGGTGGTCCAGGAGGCCCTGTGTTCAAGCCCCTGCATTGTTGTTTTCTCCCCAACTAAAATTGATCTCCACTTGTTGGGCCTTCCAAATATTTCAAGCCTACAAGTGAGGGAGAGTGTTAGTGATATATAATTAAATTTGCCTTCAACTACTAGCTTAAGCTTTTGGATGAACTGGTGGCTTCATACAAACAATTATATTTTGGAGGATACTTGGGAGAAGAAAAGCCCGTTTATGCCGCTTTCCTCGACTCTATCACTTGTTAGATAGAGAATGCACTCGATATCCTTTGTTTTGCCCTCTTTTGTTATTTTCTTCTTGTTGCCCCTTCATACCCTTACTGACCAAGAGGCAGTTGAGGTAGTTGGCCTTTGTCTTCTTTCTATTGTTCCCAAAAAAAAAAGTGTTTCAACAAGTGTTCCATCATGGATGAAGGGATTCCAAATTTTGGGCTTCCAAGCCATCTAAGGGTTTCTCTTGTAACACTTTTTTTCATATGTTCTTTGCTCCTTCCTCTCAGTTTGGGTGCGTTTGCATTCTCCTCTCTTTGGCTGGCTAAAACTCTAAAATGTTGAAGTCTTTGTTTGGCAAGTTCTGGATGGGAAAGTAAACACACAAGATCATCTACAAAGACATTCATCATTCACTCTATTGCAATAGTATATTTTTTGTTGCAAGGAGGATGACCTTGAATATCTTTGAGTCTTTGTCTTCTTTTTTTTTCTATTTATTTTTTTTATGAGTATCTTGTCTAGCTTACGCATGCCGAATAATCTTGTGAGACAACCTGCCTAATCCTACAGTATTTGGATAGAGGAACAATACGATTTTTAGAGGGTCTTGTGCAGTGTAGTTGGGGTATTTTTGCTACAACCCAACTAAACTCGTGGGATATTAAACCTTCAGTAGGTGAATATCATGGATTGAGCCTATGACCTCTTAGCCTTAGAAGCATCTCGCGGCATAGTTGTTTTTGTCCATTTTGTGGGAATTTAGATAGAGGAACAATAGGATTTTTAGAGGGTCTAAAAGATATGGAGATGAGCCCTGTGTGGGTGTTTGTTTGGTTTAATTCCTCGTTATGGGTGTCTAATATTCAAGCTTTTTGTAATCGCCAGCATGATTTGATTCTTTTTGATTGAAATCCTTTCTTGTTGTTGAGATGAGGCTGTTTTCTTTTTTATTTGTTTTTTGTGGTATGCCCTTTACCTTCATTCTTCTCGATAAAAGCTTGGTTTCTTATATAAAAAGAAAAAAAATGTTTTTTATGGCAAGGCCTCATTGTATAATTTCATTATTCTAACAATTCAAGAATGTAATAGATTTTCTTTTTCATGGTAACTTAACTGGAAATTATCATGGAAAGCTTACATTTAAGGAATGTTATTATAATAAATTTATTCCTCTTATAGTCTAGAATTGGGGAAATCTAACAAAGGAGGAAGAGTGGAGGAGTAAGGTAAGTATGCTCTCTCCTCTCTCCTCTCTTTGCTGCCTTCTCCTTTGATTTTCTGTACCTCTTCGGTGATTTCTCTAGCATCTTCTTCAATCCTCAGCTTCACTTTTAGTCTTCTCTGGGGTTTCTTTGGCTTAGTTCTTGCTCATGGAAGTAGCAAGTTGCAAAATACTTCATACACACTTTTGCATTTGGCTGGAAAACGACCACTTTCATGTGGAGGATGTGGAAGCTCAACGATCCCTAGTTGTCTCAAAAGCCCATCTGAATTGGTTCCGTGCAGCGATAGCAAAGTTAGTCAGGCCTCGAAGGATCGGTTCTTTCTAAATTTCAAGGAGTTAGACAATGGGGGAACGGAGATCTCAAAGTTCAGATCCGACATTGGCTGGGTTTAATGTTGCTATTTCTGGCCGGTTTCAGGTGGGCGTTCAACCATCAGGGTTTCTTCAGAGGAAGACAAAAAGGGGTGGTCGTCCTTCCTCCAGATGTTGAACAGTTCTTATCAAACTTGAAGTATAAGAAATGGTTCTCGAGGCATCGCCTTCCAACTCAACTCCCTCCATAGTTCCAAAAGATCGTTAATAGAGAGTTAAGACCTGGGTTTTTCAGCTAATGATCAGAAGTTAGGAAACCTGAGCCATAGCAAAGGAAAGCTTGAATCCTTACAGCCCTCCCCTGTTTTGAAGTTGGGGATTTAGAACCCCTCGGTCTTTGTTTGAGCACCAGCAAAACAGAGCGTTCACTCGGGTCATTTGCATTTCCACCACTTGAGTAGCTGACCTCTCCTTATTGGGTGAAATCTTGAGGAAGATTTCAGCACTCTGGATCATTTCCAAGCTTTTTGTATATAATGATTGGAAGGATATTGTCAAAACTCTGGAGGCTCACTTTCAAGACAAAATCAGCTTCAATCCTTTGTATGCTGATAAGGCATTAATCCGCCTCTCTCGAAGGAATCTGGAAGATTTGGTTGAGACTCCCGGTAAATGCCAGCGTATTGGAATCTTCCATCTTTTAGTAAAAAACTGGAACAAGTTCAAACATGGCAGGCCAAAAATTATTTGAGGTTTTGAAGGGTGGTTATCCACAACAACTTACCGTTAGATTATTGGAAAAAGGATGTCTTTGTTGCAATTGGGAATTATTTTAGTGGCCTCGAGAGCATATCCTTGGATACATTGAATATGATTAATGTGTCTAAAGCTAAAATTAAGGTGAAGGAAAATCTTTGTGGTTTTTTACCGATAACAATCCAATCGAAAGATGATTTTTGTGGAAAATCTTATCTTAACTTTTGAGATATTGAAATTATTGAAGAGCCTTCGGCCGTTCAAGATGCCATCTCTATTAAGTATTTCTCAAATCTGCAAGAATTGATCTCGTCTTAAAAGATGAAGGGCTAGATTTTAATGTTTCCAACCAGGAATGGGATTCAATTCGTTTCTTTCAAAGTCAAGCTTCTCAAGGAACCCATGCATTGAATTCAATAGTAATCCTAGCCTAGCTTTACCGATCGAGGCTCCTTGCTCATATTGTCGGAATCTTCCTCCTGCTGCAGTAAATTTGGTTAATCAATTCAAATTTGGAGGGAACTTGATTGGAAAAGGCAAAGAGTAGCCTTCTCATAAGAGAGAAAAATGCGGCTGAATCCTTTGCTTTGCCCAATAAGAATCCATGTGCCACACATCCTTTAACCAAGCAATTAAACTCCTCTCAGATTAATTCGGCTGACATCTTTTTAAAAAATGGACAGATGGCATCCTCTTACACGTTAGATGCTAAAAAACCTGCAAAATTTTAGCAGTTGCTCATTGGGCGTAAGAACTTTTAGTTCCCTCTTCAACGGATGCTCCAGAAACCTTTAAAATACCTTCAAAGCATGCTCGTTCCAACTCCGCATCTTTTAATTCTCTCTTATCTTCTTCTCTCCATTCCTCATTAAAGTCAGGCCCAAGAGAAAGATTGAAAAAAAAGAAAATGTTAGAAAATCTTCCCACATTACCTCAAGCCCTTCCCAAAGTTTTTCATCCGAAAGAAAAAATCTAAGAATTTTTAGGCCAAACAATCTTTAAAAGCCCAGATACTTGAAGATCAAGCTCTTGATTTGATAAAGGCAATCTGCGCCCACTCTCATTCCTCAGTCCAATCCAGCAGATCCAAGTTGTTTTTGAAGGCTAATCCAGATTTGTTGAAAGTTAGTTGTACCCAGATTCTAGCTCCAACCTGTTCTACTAATTCAATTGGTCATGATTCTCACCCTACGCAGTTTAAATATTTAGAGTTCTATTTGCCCCAACGGGAAGGTAAAACTTTTTAGGGCTCTCTAAGCAAAACCCTTATCAATCCCTCTAGAAAGAAGGGTGAGTCTTCCTTTGACTCTTCTTTCGGCATTAGCAATGAGGAATTGGAGTTTTCTGCTAAGTCATCCAAGTTTGAGAGGCAAAAGCATTATGAGCCTTTAGAAACAGATCTTAATGCACTGTTTCATTGCAAGGAAGACTTGAAATCTGAAAATTTGCCGTTTGCTACCCGCTGTGCCCAACTTGCGAAATACCAGATCATCTAAAGTCAATAGTTGTCGACTGTGAAATTATTCTAATTTGATTCTTTAGATACTTAAATGTAAGTTTCTCAAAAGCTTGGTCCAGTTTCTGGCTTTCCTTAATTTCTCTTCATGTGGGTGGCAAGTAAAATCGCACTGATTGTGGTAGATGACTTGAGATTGGTGGTCTTGATCTTTGTTTCTTTGGCCTGCCAAAGGGAAGTAACTTCTGGGGTTTGTTTTTTGAAATAATGGCTGATGGTATTGAAAACTTCTTCGAGCTTCCTCTGGGTTCAGTTTATATTGGCAAGACAGATTTGAGGCAATTGTTTGCATCTTCTAGGCGACTCTCTCTCCAATCATTTTGAAGATTTTGGTTTGCTAGTTTTCAGTTTCAAATGGGTTCCTTACGAGAGAACTTTAAGTTTTGCTTTGTATTTTGCTTTCTACGTTTGTTTTATCTTTGAGTCGTTTGTTTTAATTTGTTTAGATTCCATTGAAATTCGTTTTTAGGTTGCCTTCTTTTTGTTAGCCTAAGCTAGCTTCAGGTTTAGTCTTGACTGTATTCTTTTAGTTTGTCTTTGTATAATACTCTTGTATTTTAAGCTTAGGTCTCATTTATTATCATTAATAAAGAGACTTGTCTCTGCTTAAAAAAAAGTCTAGAATCCAGATAAAAGTTTATTACAAATAGTATTCTTGCTTGTATCTGGTTTCTTCCTGAAAAAACGTGGAATGATTGTGTTAAGAGTATTACTGGTAACATACTAACCCTAAAATCAGTTCCTAATTCTTCTTCACTAGGAACATACTGGGATACTATTAGACACTTAATGCTTTGTTATTTTGTCGTTAGTTTGTTAGGGTGAGTTGGGGGGTTTAGTTGGGATATTTTTGCTGATTGATATTAACTTTTTACCATCTAGTTCTCAGAATCAGGATCCTACCCTAACAGATCCTAGGGAAGAATTAAAAGATTAATGTTTTGTGGTTGGTATGCTAATTTTTTATATTGTTAAAGATGGAGCATCATGATCAGGATTTGGTAACCTCCGATATTTAATTTTAAGTGAAGAGTATGTCTGGATATATTTTCTTTTTAAGATTCCCCAACTCTCTAGTCTCAATTAGTTCAAATAGTTATCTAATTGATGACTACCTGTCCAAAATATTTTTTAAAAATCTTGAAAGCACTCCCCTCTCTCCTTTTTCAAGTTTATAATAGGTGTTTCTCTTTCACTAGTAAAGTTCATTTGAAATTGTCTCAATGCAATCCTGTATTTCACCTAAAGCTCTTTGCACTATATCTGAGGAATAACGTGACACATTTTTATTACTTCCTTGAAATCAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTATTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAAGGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTACTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTA

mRNA sequence

TTCTAAACAAAATTACTCTCACCACACCCATTAATCCACCGCGGTTGCCGCTCGTTCCCTTATAGCCGTCGTCGAACATCCAGTCCAGTTACCATCAGTCCACTCGCGTCGTTTAGGTTCTTCTCGTCGTTTTTTGCTGAGAAACCTTAAACCTGGTTTTTTGGTGAAGAGATCCTTGTAATAACGGATGAATTCAGCTTTAATTGAGATGTTGACGTTTATTACTTATTAGGACACAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCACATGTCCTATTGAGCTTCTAATCTATCTCTGCCACTTTCCCCATTTGTAGAAACGAAAGGTTGAAGGAGAACTTCAGTCATGTATGTATATAATCTATCTCTAGTTGAGCTGATAGCATCCACTTTTGAATGTTGATTCATACAAAGATTCTACTATACAGTATATCTGTTTTATTATCCTATCATCTGTGTTTTTTAGTATCAATTTCGAGAAGGTGACAAATCCAAATCCAGGTAGATCTTCTATCTCAAGGGATGTAAACTATTCCTTGTTTTTTCTTTAATCTATGGCCTTTTCTGTACTTTGGCATGGACCATATCACATTGGCTGTATACATTTTCTTCCTTTTGTTTTTGTCATAGAGACTGTCACCTTCTCAATAGTAAACGGTTGTTTTTCTGGTTTACTTGGAACTATTGGGCTGTTTGGTGAACCGTGATGGAATGAGTTTGCAATGTAATATACTCGAAAACTCTATGTTTGGATTA

Coding sequence (CDS)

ATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTCCAAAATGTTGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCAGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTTATCAAGGATATCCAAGTTACATTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGA

Protein sequence

MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Homology
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BLAST of MELO3C008876.jh1 vs. NCBI nr
Match: XP_008442051.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_008442052.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo] >XP_016899531.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo])

HSP 1 Score: 242 bits (618), Expect = 8.93e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. NCBI nr
Match: XP_004144648.1 (mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011653961.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_031740627.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >KAE8649777.1 hypothetical protein Csa_012388 [Cucumis sativus])

HSP 1 Score: 238 bits (608), Expect = 3.00e-79
Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMVSKLDGMKQTIDDYQVKIEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. NCBI nr
Match: XP_022927640.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >XP_022927641.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata] >KAG6583673.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 235 bits (600), Expect = 4.98e-78
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. NCBI nr
Match: XP_023520392.1 (mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023520393.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 234 bits (597), Expect = 1.43e-77
Identity = 114/118 (96.61%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of MELO3C008876.jh1 vs. NCBI nr
Match: XP_038894867.1 (mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_038894868.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida])

HSP 1 Score: 233 bits (594), Expect = 4.10e-77
Identity = 114/118 (96.61%), Postives = 115/118 (97.46%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MD P QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDLPTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLD MKQTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDAMKQTIDEYQVKMEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy Swiss-Prot
Match: Q6ID77 (Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana OX=3702 GN=MED11 PE=1 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.0e-45
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B5G7 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 GN=LOC103486032 PE=3 SV=1)

HSP 1 Score: 242 bits (618), Expect = 4.32e-81
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EPJ1 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111434405 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 2.41e-78
Identity = 115/118 (97.46%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVKMEDS
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKMEDS 118

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CKY4 (Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX=3673 GN=LOC111012572 PE=3 SV=1)

HSP 1 Score: 233 bits (593), Expect = 2.82e-77
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQVK+ED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQVKVEDA 118

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I6T5 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=3661 GN=LOC111471674 PE=3 SV=1)

HSP 1 Score: 229 bits (585), Expect = 4.68e-76
Identity = 112/118 (94.92%), Postives = 114/118 (96.61%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ
Sbjct: 1   MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS 118
           VTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI KLDGMKQTID+YQVKMED+
Sbjct: 61  VTLRDEIKSACEYRPFEKCDYSSRIINELCCKKLEYMILKLDGMKQTIDEYQVKMEDA 118

[Close]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L450 (Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=3659 GN=MED11 PE=3 SV=1)

HSP 1 Score: 226 bits (575), Expect = 3.24e-74
Identity = 115/140 (82.14%), Postives = 117/140 (83.57%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK--- 60
           MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK   
Sbjct: 1   MDPPAHNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKNQR 60

Query: 61  -------------------DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMI 118
                              DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+
Sbjct: 61  NLTKEEEWRSKMEHHDQDLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMV 120

[Close]
BLAST of MELO3C008876.jh1 vs. TAIR 10
Match: AT3G01435.1 (Expressed protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.4e-46
Identity = 83/111 (74.77%), Postives = 101/111 (90.99%), Query Frame = 0 

Query: 1   MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQ 60
           MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQ
Sbjct: 1   MDPQTQNTSLQRLQNVENRVVKVLELAGGVMEELASPSGPKKEFVNSHCREFMQSMKDIQ 60

Query: 61  VTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDDY 112
           VTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Sbjct: 61  VTLREEIKSACEYRPFEKCDYNARIANEICFQKLEYVLTQLEDLKQTADRY 111

The following BLAST results are available for this feature:
BLAST of MELO3C008876.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442051.18.93e-81100.00PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]... [more]
XP_004144648.13.00e-7997.46mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus] >XP_011... [more]
XP_022927640.14.98e-7897.46mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita mos... [more]
XP_023520392.11.43e-7796.61mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pep... [more]
XP_038894867.14.10e-7796.61mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida] >XP_0... [more]
BLAST of MELO3C008876.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6ID772.0e-4574.77Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana O... [more]
BLAST of MELO3C008876.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B5G74.32e-81100.00Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis melo OX=3656 G... [more]
A0A6J1EPJ12.41e-7897.46Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita moschata OX=... [more]
A0A6J1CKY42.82e-7795.76Mediator of RNA polymerase II transcription subunit 11 OS=Momordica charantia OX... [more]
A0A6J1I6T54.68e-7694.92Mediator of RNA polymerase II transcription subunit 11 OS=Cucurbita maxima OX=36... [more]
A0A0A0L4503.24e-7482.14Mediator of RNA polymerase II transcription subunit 11 OS=Cucumis sativus OX=365... [more]
BLAST of MELO3C008876.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G01435.11.4e-4674.77Expressed protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019404Mediator complex, subunit Med11PFAMPF10280Med11coord: 8..111
e-value: 5.8E-14
score: 52.7
IPR019404Mediator complex, subunit Med11PANTHERPTHR22890UNCHARACTERIZEDcoord: 1..114
NoneNo IPR availableGENE3D1.10.287.3490coord: 7..75
e-value: 1.1E-6
score: 31.0
NoneNo IPR availablePANTHERPTHR22890:SF2MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 11coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008876.jh1.t2MELO3C008876.jh1.t2mRNA
MELO3C008876.jh1.t1MELO3C008876.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0016592 mediator complex
molecular_function GO:0003712 transcription coregulator activity