MELO3C008603.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008603.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCACTA en-spm transposon protein
Locationchr05: 15701815 .. 15702021 (+)
RNA-Seq ExpressionMELO3C008603.jh1
SyntenyMELO3C008603.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCGGAGAGGTCATCGGAAGTAAGGAGAGCTCTCGATGCTAATTTTAGTTCGTCTGGAATGGCATCGAAAGTAATGGGAGATCCCGACACCATTAGTGATTCTTCGAGAATGGCGTTGGGAGTAAAAGGATCTCCCGACATTTTCGTGCTGCGTCGGAAGTTCCCCTATAAAAATAGATGTTTTAGTTCTGTGAAACACTGA

mRNA sequence

ATGGTGTCGGAGAGGTCATCGGAAGTAAGGAGAGCTCTCGATGCTAATTTTAGTTCGTCTGGAATGGCATCGAAAGTAATGGGAGATCCCGACACCATTAGTGATTCTTCGAGAATGGCGTTGGGAGTAAAAGGATCTCCCGACATTTTCGTGCTGCGTCGGAAGTTCCCCTATAAAAATAGATGTTTTAGTTCTGTGAAACACTGA

Coding sequence (CDS)

ATGGTGTCGGAGAGGTCATCGGAAGTAAGGAGAGCTCTCGATGCTAATTTTAGTTCGTCTGGAATGGCATCGAAAGTAATGGGAGATCCCGACACCATTAGTGATTCTTCGAGAATGGCGTTGGGAGTAAAAGGATCTCCCGACATTTTCGTGCTGCGTCGGAAGTTCCCCTATAAAAATAGATGTTTTAGTTCTGTGAAACACTGA

Protein sequence

MVSERSSEVRRALDANFSSSGMASKVMGDPDTISDSSRMALGVKGSPDIFVLRRKFPYKNRCFSSVKH
Homology
BLAST of MELO3C008603.jh1 vs. NCBI nr
Match: TYK23854.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 3.56e-21
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MVSERSSEVRRALDANFSSSGMASKVMGDPDTISDSSRMALGVKGSPDIFVLRRK 55
          M S RSS VRRALDANFSSSGMASKVMGDPDTISDSSR ALGV+GSPD+FVLRRK
Sbjct: 1  MASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTALGVRGSPDVFVLRRK 55

BLAST of MELO3C008603.jh1 vs. NCBI nr
Match: KAA0051366.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 7.63e-20
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 1  MVSERSSEVRRALDANFSSSGMASKVMGDPDTISDSSRMALGVKGSPDIFVLRRK 55
          M S RSS VRRALDANFSSSGMASKVMGDPDTISDSSR  LGV+GSPD+FVLRR+
Sbjct: 1  MASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTTLGVRGSPDVFVLRRE 55

BLAST of MELO3C008603.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DJN9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00240 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.72e-21
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0

Query: 1  MVSERSSEVRRALDANFSSSGMASKVMGDPDTISDSSRMALGVKGSPDIFVLRRK 55
          M S RSS VRRALDANFSSSGMASKVMGDPDTISDSSR ALGV+GSPD+FVLRRK
Sbjct: 1  MASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTALGVRGSPDVFVLRRK 55

BLAST of MELO3C008603.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UAZ2 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00910 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.69e-20
Identity = 47/55 (85.45%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 1  MVSERSSEVRRALDANFSSSGMASKVMGDPDTISDSSRMALGVKGSPDIFVLRRK 55
          M S RSS VRRALDANFSSSGMASKVMGDPDTISDSSR  LGV+GSPD+FVLRR+
Sbjct: 1  MASGRSSGVRRALDANFSSSGMASKVMGDPDTISDSSRTTLGVRGSPDVFVLRRE 55

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23854.13.56e-2189.09CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0051366.17.63e-2085.45CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJN91.72e-2189.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7UAZ23.69e-2085.45CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008603.jh1.t1MELO3C008603.jh1.t1mRNA