MELO3C008544 (gene) Melon (DHL92) v4

Overview
NameMELO3C008544
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionCell division protein ftsH
Locationchr05: 12656989 .. 12657343 (+)
RNA-Seq ExpressionMELO3C008544
SyntenyMELO3C008544
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGTATATTTTTAAGTTTCTAAAGGTGTATTTGGAATGGTATAAATCGTTAAACAAAAAATAATATGTATATATATGGTAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

mRNA sequence

ATCTGTATATGTAGTTGAAAAGAAATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAGAAATTTATGAAATTAGATGTTGTCTTTGAAACACCGGAA

Coding sequence (CDS)

ATGGTGCGTCGAAGGGAAAGATGCCTAGGATCAAGGTTGAAACATATTAAATCAAACAAGGATGATCTAATTCTGATTGACGATAATACAGAGGAGGAAGATAGATATGAAGAACCAATTCAGTACAAACCACTGCAAACTATATATCCAGATGATGATGAACAAGAGTTAAGAGGACCTACAGGTACACAGAATGTGGTGTACCAGGATTAG

Protein sequence

MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGTQNVVYQD
Homology
BLAST of MELO3C008544 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 6.4e-20
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLG +LK IKSNKDD I+I DNTEEE RYEEPIQY+PLQTIY DDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQNVVYQD 71
          T T  VVYQ+
Sbjct: 61 TDTLIVVYQN 70

BLAST of MELO3C008544 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 102.1 bits (253), Expect = 2.1e-18
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLGSRLK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+Q IYP DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQNVVYQD 71
          TGTQ VVY D
Sbjct: 61 TGTQIVVYDD 70

BLAST of MELO3C008544 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of MELO3C008544 vs. NCBI nr
Match: TYK30853.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 3   RRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTG 62
           +RR    G    H+     DL  +  N  +E+RYEE I Y+PLQ +YP+D E ELRGPTG
Sbjct: 118 KRRGEASGREFLHLLREMPDLSSL--NRADEERYEEAINYEPLQAVYPNDGEHELRGPTG 177

Query: 63  TQNVVYQD 71
           TQ V+Y++
Sbjct: 178 TQIVLYEE 183

BLAST of MELO3C008544 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVR+  RCLGSR+KH+KSNKDD I+I+D              +   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 57

Query: 61 TGTQNVVYQD 71
          T TQ ++Y++
Sbjct: 61 TCTQIMLYEE 57

BLAST of MELO3C008544 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.1e-20
Identity = 56/70 (80.00%), Postives = 60/70 (85.71%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLG +LK IKSNKDD I+I DNTEEE RYEEPIQY+PLQTIY DDDEQELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQNVVYQD 71
          T T  VVYQ+
Sbjct: 61 TDTLIVVYQN 70

BLAST of MELO3C008544 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.9e-19
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVRR ERCLGSRLK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+Q IYP DDE+EL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQNVVYQD 71
          TGTQ VVY D
Sbjct: 61 TGTQIVVYDD 70

BLAST of MELO3C008544 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.5e-09
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 11  SRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EE+ R EEP+ Y+P+QTIYP DDE+EL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

BLAST of MELO3C008544 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 1  MVRRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGP 60
          MVR+  RCLGSR+KH+KSNKDD I+I+D              +   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 57

Query: 61 TGTQNVVYQD 71
          T TQ ++Y++
Sbjct: 61 TCTQIMLYEE 57

BLAST of MELO3C008544 vs. ExPASy TrEMBL
Match: A0A5D3E406 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00510 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.1e-07
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 0

Query: 3   RRRERCLGSRLKHIKSNKDDLILIDDNTEEEDRYEEPIQYKPLQTIYPDDDEQELRGPTG 62
           +RR    G    H+     DL  +  N  +E+RYEE I Y+PLQ +YP+D E ELRGPTG
Sbjct: 118 KRRGEASGREFLHLLREMPDLSSL--NRADEERYEEAINYEPLQAVYPNDGEHELRGPTG 177

Query: 63  TQNVVYQD 71
           TQ V+Y++
Sbjct: 178 TQIVLYEE 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0043162.16.4e-2080.00uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1... [more]
TYK30586.12.1e-1871.43protein Ycf2-like [Cucumis melo var. makuwa][more]
XP_008464749.11.1e-0862.26PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo][more]
TYK30853.11.1e-0647.06retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0066916.11.1e-0648.57Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TIM33.1e-2080.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E3X19.9e-1971.43Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00... [more]
A0A1S3CM645.5e-0962.26uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A5A7VKG55.1e-0748.57Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5D3E4065.1e-0747.06Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008544.1MELO3C008544.1mRNA