MELO3C008504 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008504
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	EKC/KEOPS complex, subunit Pcc1
Location	chr06: 8888087 .. 8889956 (-)
RNA-Seq Expression	MELO3C008504
Synteny	MELO3C008504

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCTCTCACATCCGAGTCAGTCATCTTCGTTTTTTCAACGAGTCACGGTCTCAACTTCTTCCCATTTCTTCCACTCCCTCGCCGCCCACCATCCTCCCCCCGCTTCTGACTTGCCGCTGCCGGTCAGTTTCAAAGCGCTCTTCATGCTCGTCAAACCCTTCCATAAACTCAACCTTCTCTGTATTCTTATCTTTACTTCATAGGTTATTTGAGGGGAAAATCTGGCTGTTTTTCATTAGAATTTAAGCAATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTCTCTCTAAGTCCATAAATATATAATTATAAGTTTTCCTTTTCTTATATGGCATATGCTTTGAAATCGATTTATTCGTAGATGTTTCGTGTTAGCACTTGGGTTATAACTTCGCCTCTTTAGCTTTATCTTAAATTGATTCTCCTGTGATTAATCACTTAAGTTCTTTCTCTGGTTCATTGTAATCTCCACAAACAATGTAAGACAATGATGACGATTATCCTGATGTTCTTCCTCCTGTCAACCCTTTGTTTGGTTTTCTTTTTCACCCTGAAAGTTCAATTTTTTCTTGCTGAATTATCCGGATTTTGTGGCCAGCGTAGTGTCATGAAAGCTTACTGTTTGAATGCACGAGTAGGTTTGTATTTATGTTATTTATAATTTTGACTCTAGGTTTATATGAGCGTGCTATACAAACTCTCTACTTCTAGAAGTTGTAATTTGTAATTTGATAGTTATCTCTTATAATAAAACTGCTCTCCTCCTTTGTCCTTTGATGTAACTAACACTATTAGTGAACCTTTTCAATCTCTGTGTCTATTTCTCTGTTGCTTACGTCTTCTGTTTTCTTTGATTGTCAATTGCCACCAAATTCTTGGTTGTTGGAACGGTGGGGACCTTTTTAACTAGCCAAATCTCTCTTCTTTTGCTGTCGTTTTTGGAAGCCAAAGTTGTTTTTTCTGTCTTGTCAGCGTTCAACAATTGTTACTTGTTTCTAAAATGCTCATCGCTTCTTTCCTTAAATAAGCATCTGTTTTGGATCATATATCGGAAATATGCAGTTCCACTCATTGTTAGCGATCTTTCATCTCTTCTATATTACCTTCGAGACAGGACAAGTAATTTGCTTCTTATTCCAACTGGTTTGATCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAACGCTTTAATCGTCGATAAAGAGGTGCTTCTCGATGATATCAATCTTCACGTTGTTCCTACAAAGTTAACTTGTTTCTGATTCGATATGTGTGCTATGAACAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAATTTCTAATGGAAAACTTTCAATGTGAGCCTCTTTTTTGGTCCTTGCATTCATAGTTTTTAATGTACTTCACAGCTTAGTACTGCTATTGCATTCCATCATATTTTGTAGACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTTCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACTCGAAGTGGAATTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATATATGCAGTGTCATTTATTTCCTTAAAGAAGCTCCGATTTTAATTTACATCTGACCTGTAATTTTATCACAATGTTTTGTCATTGTTTGATCGAGTGTGACGCTCTTTCTCCGCCCATCATTCGAGCATTGAGATCTAACAAGATAAACATTTTCAGTAACAAATTGTCCTTTATTACTCCTTACAGTCAACCATATAACTACTTGATATCTTTTTCCTTTTTTATGCC

mRNA sequence

ATTCTCTCACATCCGAGTCAGTCATCTTCGTTTTTTCAACGAGTCACGGTCTCAACTTCTTCCCATTTCTTCCACTCCCTCGCCGCCCACCATCCTCCCCCCGCTTCTGACTTGCCGCTGCCGGTCAGTTTCAAAGCGCTCTTCATGCTCGTCAAACCCTTCCATAAACTCAACCTTCTCTGTATTCTTATCTTTACTTCATAGGTTATTTGAGGGGAAAATCTGGCTGTTTTTCATTAGAATTTAAGCAATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAACGCTTTAATCGTCGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAATTTCTAATGGAAAACTTTCAATACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTTCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACTCGAAGTGGAATTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATATATGCAGTGTCATTTATTTCCTTAAAGAAGCTCCGATTTTAATTTACATCTGACCTGTAATTTTATCACAATGTTTTGTCATTGTTTGATCGAGTGTGACGCTCTTTCTCCGCCCATCATTCGAGCATTGAGATCTAACAAGATAAACATTTTCAGTAACAAATTGTCCTTTATTACTCCTTACAGTCAACCATATAACTACTTGATATCTTTTTCCTTTTTTATGCC

Coding sequence (CDS)

ATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAACGCTTTAATCGTCGATAAAGAGTTACAGCCAGACAAGGTGAAAAGGGCGATGTCAATTTCTAATGGAAAACTTTCAATACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTCAGTTCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTCGGACTCGAAGTGGAATTCTGA

Protein sequence

MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKLSIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF

Homology

[Close]

BLAST of MELO3C008504 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >KAA0050520.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa] >TYK11292.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of MELO3C008504 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 91/99 (91.92%), Postives = 96/99 (96.97%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKR MS+S+GKL
Sbjct: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKT+EDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

[Close]

BLAST of MELO3C008504 vs. NCBI nr
Match: XP_004146228.1 (uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetical protein Csa_010241 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 7.9e-40
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKRAMS S+GKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG E +F
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

[Close]

BLAST of MELO3C008504 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 171.0 bits (432), Expect = 5.1e-39
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           M PTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL VDKELQPDKVKR M++S+GKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 95
           S+HFEAVEARFLRASFS+FVDVLTLATKTIEDFG
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFG 117

[Close]

BLAST of MELO3C008504 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           M PT SVASDGE  WEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG  V+F
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

[Close]

BLAST of MELO3C008504 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.9e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of MELO3C008504 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.9e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

[Close]

BLAST of MELO3C008504 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVY AL+VDKELQPDKVKRAMS S+GKL
Sbjct: 59  MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 118

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           SIHFEAVEARFLRASFS+FVDVLTLATKTIEDFG E +F
Sbjct: 119 SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

[Close]

BLAST of MELO3C008504 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.5e-39
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           M PTASVASDGEAKWEF CDFEVDYESEKKASIVYNAL VDKELQPDKVKR M++S+GKL
Sbjct: 24  MAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDGKL 83

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 95
           S+HFEAVEARFLRASFS+FVDVLTLATKTIEDFG
Sbjct: 84  SVHFEAVEARFLRASFSAFVDVLTLATKTIEDFG 117

[Close]

BLAST of MELO3C008504 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.4e-37
Identity = 81/99 (81.82%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVYNAL+VDKELQPDKVKR M++S+GKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 100
           S+HFEAVEARFLRAS+S+F+DVLTLA KTIEDFG  ++F
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

[Close]

BLAST of MELO3C008504 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 123.2 bits (308), Expect = 1.1e-28
Identity = 58/94 (61.70%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60
          M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+R MS+SN KL
Sbjct: 1  MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 61 SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFG 95
          S+HFEA+EAR LRASFS+FVDVLTLAT+TI++FG
Sbjct: 61 SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFG 94

The following BLAST results are available for this feature:

BLAST of MELO3C008504 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466840.1	1.6e-45	100.00	PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P...	[more]
XP_038895564.1	2.9e-42	91.92	uncharacterized protein LOC120083771 [Benincasa hispida]	[more]
XP_004146228.1	7.9e-40	89.90	uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetica...	[more]
XP_022141079.1	5.1e-39	90.43	uncharacterized protein LOC111011564 [Momordica charantia]	[more]
XP_023553191.1	1.9e-38	85.86	uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C008504 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008504 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CTG0	7.9e-46	100.00	uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=...	[more]
A0A5D3CJ23	7.9e-46	100.00	EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0L7A2	3.8e-40	89.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1	[more]
A0A6J1CHJ5	2.5e-39	90.43	uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1G2C3	1.4e-37	81.82	uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500...	[more]

BLAST of MELO3C008504 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53045.1	1.1e-28	61.70	unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.310.50		coord: 7..97 e-value: 7.2E-23 score: 82.4
None	No IPR available	PANTHER	PTHR31283:SF5	GEO08993P1	coord: 10..96
IPR015419	CTAG/Pcc1 family	PFAM	PF09341	Pcc1	coord: 18..91 e-value: 5.7E-19 score: 68.1
IPR015419	CTAG/Pcc1 family	PANTHER	PTHR31283	EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER	coord: 10..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008504.1	MELO3C008504.1	mRNA