MELO3C008276 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008276
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr03: 2940175 .. 2941007 (-)
RNA-Seq Expression	MELO3C008276
Synteny	MELO3C008276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGTTGCAGTTTGACGACGACCGTCATCGAAAGCTGAATAAAGATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAGTAAGAGTATGAACATAATTATATGACTAACTGGATTTTATGGAATACTAATTGCTTTGTTATTTTTTTGTGTTTTTTTTCAGACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAGCTGAGAACCATTGCAAAGTGGTCGAAGAAAGCTATGAGTCTGAAGGATGCGATGACAGTGCAGGTGATTGAGCTTATGGAGATCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTATCATGATAATGAATCAGAAGGTGTCGCTCATGAGGAGCTTCATCAAGATGTCTGATTCGATGATGGCCGCTTACTGTAAGGTCCTCCTTGGCGGTGACCTGTGA

mRNA sequence

ATGATTGGTTGCAGTTTGACGACGACCGTCATCGAAAGCTGAATAAAGATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAGCTGAGAACCATTGCAAAGTGGTCGAAGAAAGCTATGAGTCTGAAGGATGCGATGACAGTGCAGGTGATTGAGCTTATGGAGATCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTATCATGATAATGAATCAGAAGGTGTCGCTCATGAGGAGCTTCATCAAGATGTCTGATTCGATGATGGCCGCTTACTGTAAGGTCCTCCTTGGCGGTGACCTGTGA

Coding sequence (CDS)

ATGTTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGATTAG

Protein sequence

MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

Homology

[Close]

BLAST of MELO3C008276 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 152
           SSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 151

[Close]

BLAST of MELO3C008276 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.6e-47
Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L
Sbjct: 10  LLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKPFPHYDAL 69

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
                                            +D IDMEFPAMCSPRMNMSPE+M+GGR
Sbjct: 70  -----------------------------PVPTKDVIDMEFPAMCSPRMNMSPENMMGGR 129

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
           S RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Sbjct: 130 SGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

[Close]

BLAST of MELO3C008276 vs. NCBI nr
Match: KAA0066443.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 184.1 bits (466), Expect = 9.3e-43
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 20  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFAD 79
           F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFAD
Sbjct: 183 FGLNDDVKFIIAERDMFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTRAKTFAD 242

Query: 80  IVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRS 139
           I SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G RS + SDGRTGSS QKRKRS
Sbjct: 243 IDSNVLGDNDSVPVEDGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSSGQKRKRS 302

Query: 140 MQQFETFDLICECI 154
           MQQFET+DLI EC+
Sbjct: 303 MQQFETYDLIRECL 316

[Close]

BLAST of MELO3C008276 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.3e-40
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 43  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFP 102
           HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 103 AMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI EC+EAA D
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

[Close]

BLAST of MELO3C008276 vs. NCBI nr
Match: TYK29878.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD L
Sbjct: 149 LLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 208

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVF K R TGA  E F DI SNV  +++   AEDG+DMEFP MCS RMN+S ED +G R
Sbjct: 209 SYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 268

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            S S+  R GSS  KRKR   QFET D+  + +  + D
Sbjct: 269 PSMSTVDRMGSSGSKRKR-RGQFETVDVFRDAMHISND 305

[Close]

BLAST of MELO3C008276 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.4e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL
Sbjct: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR
Sbjct: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 152
           SSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Sbjct: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICE 151

[Close]

BLAST of MELO3C008276 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 7.9e-48
Identity = 101/158 (63.92%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LKKTFQAI EMRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L
Sbjct: 10  LLKKTFQAIAEMRGPAGSGFGWNDDVKCIITERDVFDHWVWTHPAAKGLLNKPFPHYDAL 69

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
                                            +D IDMEFPAMCSPRMNMSPE+M+GGR
Sbjct: 70  -----------------------------PVPTKDVIDMEFPAMCSPRMNMSPENMMGGR 129

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
           S RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Sbjct: 130 SGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

[Close]

BLAST of MELO3C008276 vs. ExPASy TrEMBL
Match: A0A5A7VE95 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G005370 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.5e-43
Identity = 93/134 (69.40%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 20  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFAD 79
           F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFAD
Sbjct: 183 FGLNDDVKFIIAERDMFDHWVRTHPVAKRLMNDPFPHYNALSYVFRKDRATGTRAKTFAD 242

Query: 80  IVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRS 139
           I SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G RS + SDGRTGSS QKRKRS
Sbjct: 243 IDSNVLGDNDSVPVEDGIDMEFLAMSSLRMNLSPEGMMGSRSGQLSDGRTGSSGQKRKRS 302

Query: 140 MQQFETFDLICECI 154
           MQQFET+DLI EC+
Sbjct: 303 MQQFETYDLIRECL 316

[Close]

BLAST of MELO3C008276 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.6e-40
Identity = 88/116 (75.86%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 43  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFP 102
           HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP
Sbjct: 2   HPAAKRLLNKPFLHYDALSYVFEKDQATGAHAETFADIDSNMSAGYDSVPTKDGIDMEFP 61

Query: 103 AMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQFET+DLI EC+EAA D
Sbjct: 62  VMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

[Close]

BLAST of MELO3C008276 vs. ExPASy TrEMBL
Match: A0A5D3E267 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001310 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 89/158 (56.33%), Postives = 107/158 (67.72%), Query Frame = 0


Query: 1   MLKKTFQAIVEMRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTL 60
           +LK+T  AIVE++GP  SGF W+  +KCII  +DVFD W RTH   KG LNKPFPHYD L
Sbjct: 149 LLKRTIMAIVEIQGPTCSGFGWHYELKCIIAAKDVFDSWARTHLACKGLLNKPFPHYDEL 208

Query: 61  SYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGR 120
           SYVF K R TGA  E F DI SNV  +++   AEDG+DMEFP MCS RMN+S ED +G R
Sbjct: 209 SYVFEKDRTTGASVEMFTDIGSNVPGESDGVQAEDGLDMEFPTMCSLRMNVSLEDRMGAR 268

Query: 121 SSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID 159
            S S+  R GSS  KRKR   QFET D+  + +  + D
Sbjct: 269 PSMSTVDRMGSSGSKRKR-RGQFETVDVFRDAMHISND 305

[Close]

BLAST of MELO3C008276 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 4.8e-05
Identity = 16/57 (28.07%), Postives = 33/57 (57.89%), Query Frame = 0


Query: 18  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS 75
           +GF W+     +I + D+++ +++ HP A+ +  K  P Y  L ++FGK  + G ++
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDGRYT 455

The following BLAST results are available for this feature:

BLAST of MELO3C008276 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055070.1	1.7e-81	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p...	[more]
KAA0033551.1	1.6e-47	63.92	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p...	[more]
KAA0066443.1	9.3e-43	69.40	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0048148.1	3.3e-40	75.86	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
TYK29878.1	3.6e-39	56.33	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C008276 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLC6	8.4e-82	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B9T0	7.9e-48	63.92	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VE95	4.5e-43	69.40	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7TYU4	1.6e-40	75.86	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E267	1.8e-39	56.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C008276 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	4.8e-05	28.07	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 112..139
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..139
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008276.1	MELO3C008276.1	mRNA