MELO3C008228 (gene) Melon (DHL92) v4

Overview


Name	MELO3C008228
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotran_gag_3 domain-containing protein
Location	chr03: 2150282 .. 2150698 (-)
RNA-Seq Expression	MELO3C008228
Synteny	MELO3C008228

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATCACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCAACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGGCTTTATTGACGAATCCTTTCCCACACCTCCGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCCTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACTGAAATCAGACCACTTCATCTTCAACAACCAAAATCAGTAA

mRNA sequence

ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATCACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCAACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGGCTTTATTGACGAATCCTTTCCCACACCTCCGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCCTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACTGAAATCAGACCACTTCATCTTCAACAACCAAAATCAGTAA

Coding sequence (CDS)

ATGGGAACCGAAGCAAGTTTTTCTTCTTCAACCTCCAAAGAACTATCATCACCCCTCTTCCTTCTAACAAATATATGTAACCTAATATCCATTCGGCTTGATTCAACCAACTACACCCTCTGGAAGTTCCAATTTGAACCTATGCTGAAAGCGTTGTACGGCTTTATTGACGAATCCTTTCCCACACCTCCGAAGACGATTTCAAACTCCACAACTGTGAGTTCCTCAACAACTACTCAGACCACTTCGTCCTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAACTCAGACCACTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACCGAAATCAGACCGCTTCGTCTTCAACAACTGAAATCAGACCACTTCATCTTCAACAACCAAAATCAGTAA

Protein sequence

MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKALYGFIDESFPTPPKTISNSTTVSSSTTTQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKSDHFIFNNQNQ

Homology

[Close]

BLAST of MELO3C008228 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 86/108 (79.63%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDE 60
           M TEAS SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA  LYGFIDE
Sbjct: 1   MATEASSSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDE 60

Query: 61  SFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQPNSDHFVF 105
           S PTPPKTISN TT SSS TTQTTSSSTTE+   P    Q     F+F
Sbjct: 61  SIPTPPKTISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMF 108

[Close]

BLAST of MELO3C008228 vs. NCBI nr
Match: KAA0041430.1 (Thaumatin-like protein [Cucumis melo var. makuwa] >TYK24304.1 Thaumatin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 5.1e-13
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 79  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS 129
           TQTTSSSTTELRPLRLQQP SD FVFNNRNQTASSSTTEIRPL LQQ KS
Sbjct: 156 TQTTSSSTTELRPLRLQQPKSDRFVFNNRNQTASSSTTEIRPLHLQQPKS 205

[Close]

BLAST of MELO3C008228 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

[Close]

BLAST of MELO3C008228 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

[Close]

BLAST of MELO3C008228 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-11
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

[Close]

BLAST of MELO3C008228 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 86/108 (79.63%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 1   MGTEASFSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDE 60
           M TEAS SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA  LYGFIDE
Sbjct: 1   MATEASSSSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDE 60

Query: 61  SFPTPPKTISNSTTVSSSTTTQTTSSSTTELR--PLRLQQPNSDHFVF 105
           S PTPPKTISN TT SSS TTQTTSSSTTE+   P    Q     F+F
Sbjct: 61  SIPTPPKTISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMF 108

[Close]

BLAST of MELO3C008228 vs. ExPASy TrEMBL
Match: A0A5D3DL32 (Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00750 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.5e-13
Identity = 46/50 (92.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 79  TQTTSSSTTELRPLRLQQPNSDHFVFNNRNQTASSSTTEIRPLRLQQLKS 129
           TQTTSSSTTELRPLRLQQP SD FVFNNRNQTASSSTTEIRPL LQQ KS
Sbjct: 156 TQTTSSSTTELRPLRLQQPKSDRFVFNNRNQTASSSTTEIRPLHLQQPKS 205

[Close]

BLAST of MELO3C008228 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

[Close]

BLAST of MELO3C008228 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

[Close]

BLAST of MELO3C008228 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 8  SSSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKA--LYGFIDESFPTPPK 67
          SSS  K+  SP+FLL+NICNLIS+RLDSTN+ LWKFQ   +LKA  LYGFID + P PP+
Sbjct: 9  SSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCPPR 68

Query: 68 TISNSTT 73
          T ++S+T
Sbjct: 69 TNNSSST 75

The following BLAST results are available for this feature:

BLAST of MELO3C008228 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17989.1	1.1e-31	79.63	uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]	[more]
KAA0041430.1	5.1e-13	92.00	Thaumatin-like protein [Cucumis melo var. makuwa] >TYK24304.1 Thaumatin-like pro...	[more]
XP_008448007.1	1.3e-11	62.69	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_008448008.1	1.3e-11	62.69	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
KAA0049700.1	1.3e-11	62.69	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C008228 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C008228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3T6	5.3e-32	79.63	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3DL32	2.5e-13	92.00	Thaumatin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A5D3CLI6	6.1e-12	62.69	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]
A0A1S3BI58	6.1e-12	62.69	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	6.1e-12	62.69	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MELO3C008228 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 27..63 e-value: 1.0E-5 score: 25.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008228.1	MELO3C008228.1	mRNA