MELO3C008106.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008106.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription initiation factor IIA subunit 2
Locationchr03: 735791 .. 746484 (-)
RNA-Seq ExpressionMELO3C008106.jh1
SyntenyMELO3C008106.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTTTCGTGGAACAGCCCCCACTTGAACTTTCAGCCGCCCAAGAAATCCTCTCTCCGACAACCATTAGCAGCGACTACTAGTGACTGAGCGACACTAGAACCACCATCCAGCATCCCATTTCTGTCTTCATCAACCACGCCAGACTCCGAGTTCCAGCGACGGCGGCGCTTACATCCTTCGGTGGCGGTTACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAAGCGACGTTTTCCTCCCTTTCGGCAAGGTTAGACACTTACCCATTGTTTCAATGTTGGATTTAAGTCACCCACTCCTTAAGGGATCGTTATATATGGGATCGAGCATATTCGAACACCAACAAACAAGGATTTGGGTTGTTTTGAGTAAGAATCAGCGGGTAAACAGTCTAAATTTATTTTCTAACTAGTTTAAGATGCTCTAGACTAGTCTCTAATACTTGGAAGTCCTTTTGTAGGTTTGAAATAGTTTAGGAACTATTATATCACCTTGCAGCAAGGACTCAATTATGTTGTCTTGTTGATTTTTAGTTGTTAGAACCCCGTTTAGAGCCTTTTCAATTGAATCTGTGTAGATGTTTGAATATACGTATGATTAATGTTAGAGAACATAACACATAAGCATAAAACATATTGTAGAGTTTACAATGGAAAGTATTAGAATTCTTGAGAATGTCGATGGCCCTTCGTGGAGTCAGTCAGTTGGGCTGACGTTGACTGAGAGATCAGTGATCTTGGATTATATCAGTTGGACCGGAAAAGAGGTCGGTGGACTTGGATATATCAGTTAGGGGCAATGGAGATCGTTGGTAGCCTCGGATGAAGTCAACAAGGTTGACGGAGTGTGTTGATGATAGTGGATAAAGTCATGTCGATGCACCTGGTCTCAATTAGTTGAGGTCAACGTGTTTGAGGTATTCATTCAGAATTTTTTGTGAGTGTTAAGCTGGAATGTTTACTGAATTTGATTAGTTTGATTTAAAACTACGTATGATATGGTAATCTAATTCATGAGGTTAGCATCATGTGATTGACATTTAAAGTTGTATGTATGTTGTTTGGTGACTGTTCAGCTGTGGGCTAGGGCTACTTACCAGTACAAGTGTCAAGTGTGTATCAACCCCCCACAACATTTTTTAGGTGTTGACGGCTGTTGCGACCTTGGTTATAGCAAAAAGGGAATATAGGAAAGATTGACTATTGGGCACATGCCATTGTCGTGGTCTATTTTCTTTAAAAGATCATTTCATTCCAACATTTGATTATTGAAACTTTGTTTCAAAGTCAAGTAGGTTTTTTCCGTTGGCTTTGAGTCGAGGATTGTAATTGACTTGTTTGGGTTATGTTGTTTGAGTTTGACATTAGTTTTGTTTTGTTTTGTTGAATTTGACTAAATTGATGCTTTGCATATCAATTTAGCATCAATTTTAAAAAAAAATTTACATTGAATTTCAAATTGTTTAATAGTTGTTTTAAAGTTGGTAGCATATATATTTACATCGTTACATCACTGAAAGCTTTCTAATGTACCAGAGATAGTAGAGTTAGTTACATGTCGAATATTGGTAACGTTCTCTTGGTTGGAGTTGAAATTTGGGGTCGTTAGAAGTTTCCTTTATTATTATTATTTTATCCTTTTTTAAATTGATCTCTCACTTTATTGCCATATATTTTGCTAGCTTACTCGAATTCCGATGCTATGTTCCAAAATTTTATCATTCTTTTTCAATTGTGGATTGTGTACTTTTCAACTAAAGATGTAGAGGATTGCATAAACAAGTTGAAGGAAGGTATTATCCTCAAGCTGGATTTCAAGAAGGCTTATGATCTTGTCGATTGAGACTTTTTGGATAAGTTGTTGGATGAGTAAGGTTTTGGGTATAAATGGAGAATGTGGTTTGGGGTTGCGTTAGGAAAGTGAACTATTCCATCCTCATTAATGGTACCCCTAAGGGATCTATTTAGGCTTTTAGAGGCTTAAGGCAAGGAGATCATCTGTCCCTTCTTGTTCGTAATTGTGGTGGATGTTTTAAGTTGTCTCATTTCTAAGGGAGTGGAGGGAAATATTATTGAGCCTTTTTGGGTTGGTTCCGAAAAGGTTGCTTTGTCTCCTTATTTAAGCTTCTAGCTCTGTCTGCAAAAGTATCGAGAAGCTTATGAGAGAATTTCTTTGGGAAGGAATGGATGAGGGGAAGAGATCTTATCTGGTTAGTTGGCAGGTAAATGGGTGCCCCGTGAAAGAGGGAGGGTTTGAAATTGGTAACTTAAGGATGTGTAACAAAGCCTTGTTGGCTAAATGGCTTTGGCGTTTTGTCCTTGACCCCAAATCTTTGTGGCATAGGATCATTGTGAGCAAGTATGGCTTTGATCCCTTTCAATGGGTGGCTAAAGGGATTATAGGCGCACATTGTACTCCGTGGAAGGACATCTCGCTTGAGGTCCTTTCTTTCTATGCTTGGACTAGATGCATTGTGGGAGATGGTAAGGAGACCATTTTTCTTTTTGGAAGATCAGTGGGTTGGGGATAGCCCCCCTTCTCTATCTATCCTCATCTTTATCATCTGTCATTTCTTAAAAATCATGCAATCTCTATCTTTTTATTTTGGGTGGGAAGTTCAGTGTCTTTTTCTATCAAATTCCGTTGTCACTTATCCAATAGGGAATCGACGGAAGTGGCCTCCTTTCTTTGCTCGATGAGTGCAACTTTAGGGAGGAAAGGAGGGATGTTTGTGTTTGGAAACCTAATCCTTCGAAGGCTTCTTTTGTAAATCTTTCTTCAAATTGTTGTTAGACCCTTCCATGGTTGTGTGTTGGTTTTTGGCAAGGTTTGGAGGATAAATCTAGTTCTTTATCTAGTAGGTTTTGTTAGGTTGCGTGAGCACCTTGGATGGGCTTGCTAAGAAGATGCCTATGCTTATGGGACCACCCTGTTGTATTCTTTGTCGGAAGGAGGAGGAAAACCTGAACCACCTGCTTTGGGACTGTCACTACGTGAGGTTTGTGTGGTCTTGTTCTTTCAGAAGTTTGGTTTTCAGAGTGCTGGTCAGAGAGAGATCCGTGCCATGATTGAGGAGTTTATCTTGTATCGTCCGCCATTTAGAGAGAAAGGCTGGTTTTTGTTGCTTGCCAGGGTGTACGCCATAGTTTGGGGTATTTGAGGTGAAAGGAACAAGAGAGTTTTTAGAGGTTTAGAGGACCCTTCTAATGTTTGGTCCTTAGTGAAGTTCCATATTTCTCTTTGGGCTTCTGTTTGAAGGTTCTTTTTTGTAATTATTCCATTGGTGGAATTTTATTGAGTTGGAAGTATTTCTTGTAGAAAGCTTGTTTTTTGGTGGGCTTGGTTTTTTGTCGGGCATTCTTTTCATTTCTTTTTCAATGAAAGTTGACTATTTTTACTAAAAAAAAAGCAAAAACTAGATTTTCTATCTTAGCTAAAGAGCTTCAATATTTTGCAGATCTTGATTTCCGAGAAGAATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAATGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGGTATAGCCAAAGCTGTTAGGAGATGTGGTATATTTTTCTATTTGTGTTTAGAATTTAGGTCTTGTTTAATTTAATTTGTTACTGCTTTTGCAGTCGATGACTGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGTATCTTTTTTGGCTTAAGAATTTGACAATCTTTAACGCTATAAATTTATGTTGCTAAATAAAGTCAACGTTATAAATTTGAACATATTTTTACTGATAAGAGGAATCGGTTGTGTTTGCCTTGTTTGTAGATTGCTCTGTTTGTGCTCTATTGCATGTCTAGACTTGATCTAGATAATTTTGTCAATAACACATTACATATTTGTACGTCGAATGTATATCTTAGGAACCAAGGTAGTATGGTATAACTTCGTTTCACATTGGTGAGAATGAATGGGATGATCAATGTGGTACTTAAGTGGCTTGACTCTCCCACTCCAATAGCTGACTTTTTGTGTGTTGTTCCTCAAGGTGCTTAAGTACCTAACAATGGTATCATAGCTAGTTGTCAACGTTTTGGAGTAGAGTCGGTTGAGGGTTTTGATCGAGTGTGGCTGAGTGAAGTACTATCGGAGTAGCCGGTTGGACGTCGGCTTTTCGGCGATGGGGTATTGTTAGGAACCAATATAGTGTGGGATGTCAGTGACCAATGTGATACTCTAGTGGCTTGACTCTTCCACCCAATAGTTGACTTTTGGGATGTGGTTCTCCAATGTCCTTAAGTACCTAATAGTATAGTGGATATTCTCCCGGTTCTTTTGGTTGCCATGTAGTGACTAGAACCGTGATATAGGAATGAAACAGTGTACAGTATAAAACCATTTGTATTGAGAGATGGTAGTGTTTCTTTAGTGGAGCTTTTGATTTCTATGCGATTTGGTTGGTTTTGTGATAGACCCCTATCATTAAACAACACAGTAGAAGAGTGAAGAAAGCCAATAACTGAAAATAGTCTGTTAATGAGTCGGTTAGAAAAGTTTGTTATGAAAGTAGTTAGGAAAGTAGCACAAATAGCACAGTACCCTGAAGAGTGTTCATTCTTGAAAGATAGAATAACAGGAAGAGTGTTTTGTAATTCGTGGAGGAGTATTACAATCAATAAAAGAATTCTTACTTGATATACATATTCGGGTCCCATCATATTGGTATCAGAGCAGAGCAAGAAAAAAAAATGGCAAAGAAGGCTAAAGAGAGATTTGACGATGTCGAACAAAAGATTATCAACATTCAAGCAGAGTTGAAATGCCTATGTTCAATGGTGAGGATTCTGACACTTGGTTATTTCGTGTAGACAGATATTTTAATATTCACAAATTGACAGATTCCAAAAAGATGACCGTAGCAACAATCAGTTTCGAAGGGCCAACCCTGAATTGGTATAGAGCGCAGAAGAGCAAGAGAAGTTCATGAATTGGTTGAAGTTAAAAGAGCAATTACTCGTACGATTTCGATCGGTGAGAGAAGGATCCATTTGCTGTCAGTTCCTAAGAATTCGGCAAGAATCAAGCGTGGAGGAATATCGAAACCAATTTGATAAATTGATGGCACCATTATCAAATCTACAGGATCGAGTGATTGAAGAAACGTTCATGAATGGGCTACTATCGTGGATTAAAGCCGAGGTTAAATTTTGTCGACCAAGCCGAAATGATGTTGTTGGTGATGTATAATTAAAATTTACCTTCAACCACCAGCTTAAGCTTTTAGGTGAATTGGCAGTTTAATATGGTATCAGAGTAGGTAGTCCAGGGAGGTCCTGTGTTCAAGCCCCTGCATTGTCGTTTCCTCCCAATTAAAATTAATTTCCACTTGTTGGGCCTTTCAAAATATTTCAGTCCACAAGTGAGGTAAAATTGATTTCCATTTGTTGGGTCTTTCAAATATTTCAAGCCCACAAGTGAGGGGGATTGTTGGTGATATATAATTAAAATTTGCATTCAACCACCAGCTTAAGCTTTTGGGTGAATTGGCAGTTTAATAGATGCAATTGGCTCAACTCGCAAAAAATCGGGAAATAATCTGAAACGAGGCCAACCTTAAAAGCTATATTGGAGGTAAGTACTCTGCTTCCTCTTCATCTGCTACTAAATCCAGTAATACTTCAGGCGATAGAGGAAATGCCATATTTCCAATGAGGATAATTACTTTAAGAGCAAATCCAACCGGAGAAATAAAGAAAGAAGGTCCATCAAAGAGATTGAGCAATGCAGAATTTCAAGCCAGGAAAGAGAAAGGCCTTTGTTTTCGCTACAATGAGATATTCTCATGACCACAAGTGTAAAGCCGGGGAACAAAGAAAATTGAGAATGTACATAGTGAAGAATGATGATGAAGAATTCGAAATTATAGAAGATACCAATTACGAAGAAAAAGAGTTGAAAATGGTAAGAATAGTAGAGGAAGACTAAATTGTAATTGAATTATCTATCAATTCAGTTGTGGGCCTTTCCAATCTGGACACCATGAAAGTAAGGGGAAAAATCAAGATAAAAAATATAGTAGTATTGATAGATTGTGGAGCCACCCACAATTTTATCTCAGAGAAGTTAACCAATGAATTACAATTGATCACAAAGGATACTTTCCACTATGGAGTAATCCTAGGATTTGGTGTAGCAATAAAAGGCAAGGGAATATGTGAATCAATGGAAATAATACTGAGTGAATGGAAGGTAGTAGCCGATTTATTACCATTGGAGCTAGGGGGAGTAGATGTGGAGTTAGGGATGCAATGGCTATACTCCCTAGGAAATGCAGAAGTTGACCGGCGAAACTTGACCATGACCTTCTTACACCAAGGAAGGAAAATAGTCATTAAAGGAGATCCTAGTCTAAACAAAGCAAGCGTAAGCCTGAAGAACATGATAAAATCATGGGAAGATTCTAACCAAGGATTTTTGGTAGAATGCCGATCCATGGAAGGAAATGACTACATCCTCGAAAGAGAGTGAAAATGAAATAGAAGGTTAACAACCGAAGAATTAGTGAGAGTAGTGCTGAAAAGATATGAAGATGTGTTTACATGGCCAGAAGAGCTTCCTCCACAAAGAAACATAGAACATCACATCCACCTCAAACAGGGTACCAACCCAATAAACGTCAGACCATATCGTTGTGCCTATCAACAGAAAGCAGAAATGGAGAAACTTGTAGATGAGATGCTGAAATCAGGAATCATTCGCCCTAGTAATATCCCCTACTCCAGCCTAGTCCTATTAGTAAGAAAGAAAGATGGGAGTTGGCGCTTCTGTGTAGATTATCGAGCACTGAATAATGCAACCATACCCGATAAATTCCCAATACCAGTGATCGAAGAGCTATTTGACGAATTAAATGGAGCAACCTGATTCTCCAAAATTGACCTAAAAGCAGGATACCACTAGATTCAGATGTGCGAAGATGATAATGAGAAAACGGCATTCCCAGCCCATGAAGGTCACTATGAATTCATGGCTATGCCCTTCAGCTTAACCAATGCACCGTCAACATTTCAGTCCTTAATGAATTTAATCTTCAGGCCCATATCTAAGGAAGTTTGTGCTGGTATTCTTCGATGATATACTAATCTACAGCAAAGACATAGAAGCTCATCTACAACACTTGGGGCTAGCATTAGAAGTATTAAGAAAGAATGAGTTATATGCAAATCAGAAAAAATGCAGCTTTGCCAAAACAAGGGTTGATTACTTGGGAGTAGAAGTTGACCCTGAAAAAAATTAAGCAATCAAATAATGGCCAGTACCACAGAATGTGCGAGAAGTTCGAGGTTTTCTAGACCTAACCGGATATTACAGAAAATTTGTTCAACATTATGGCTCAATAGCAGCTCAATTAACACAACTATTGAAGCTTGGAGGATTTAAATGGAATGAGGAAGCCTATGAAGCATTCCAAAAGCTGCAGAATGCCATGATGACACTTCCGGTACTAGCTCTACCAGATTTTAATGCTACCTTTGAAATATAGACAGATGCATCTGGCTAAGGAATAGGTGCAGTGCTGACTCAATCTAAACGCCCCATTGCTTACTTCAGTCACACATTGGCTGTGAGAGATAGAGCCAAACTGGTATACGAAAGGGAACTTATGGTTGTTGTCCTAGCTGTCCAAAGATGGAGATCCTATTTGCTTGCTAGAAAATTTGTAGTCAAAACCGATCAAAGATCGCTAAAGTTCCTGCTAGAACAAAGGGTGATCCAACCTCAATACCAAAAGTGGATAGTCAAGCTCTTAGGCTACTCATTTGAGGTAATATATAAACCTGGAGTAGAAAATAAAGCAGCAGATGTGCTCTCAAGGATGCCCCTACAGTGCACTTATGCAACTTGACAGCACCTACATTGATTGATCTACTCACAGTCAAAGAAGAGGTGGAAAAAGATGACCATCTACAGAAAATAATGACAACTTAAGAAGGAAGAAGGAAGCAAGGAAAGTAAGTTCTCCATCCAACAAGAGATGCTGAGATATAAAGACAGGTTGGTCATCTCTAAAGCATCAAAACTGATCCCAACTATACTACACACCTACCATGATTCAGTATTCGGGGGCACTTAGGGTTCTTAAAAACCTATAAAAGTGAAACAAGACGTAAAAAAGTACTGTGAGCAGTGCTTAACCTGTCAGAAAAATAAATCCTTAGCCCTATCTCATGCAGGTCCTTTGACACCATTGGGAATACCAAACAGTGTGTGGAGTGATATCTCTATGGACTTCATTGAAGGTCTACCTAAATCCAATGGGTTTGAAGTAATTCTGGTGGTAGTAGATCAGTTCAGTAAGTATGGGAATTTTTGACATTGAAACACCCTTACACTGCCAAAATTGTGGCTGATATCTTCATCAAAGAAGTTGTTAGATTACACGGATACCCTAAATCTATAGTCTCAGATAGAGACAAAGTCTTCTTAAGCAACTTCTGGAAAGAGCTCTTCAAAATGGCAGGAACAAAACTGAACCGAAGCAGATCATACCACCCTCAATCTGACGGGCAAATCGAAGTAGTTAACAGAGGAGTGGAGACATAGCCTTAGGGGCATTAAAAGAAAATCTCAGAATCGCTGATCCTGAAAAGAAGTGCAGATCAAAAAAGAAGAGAAGTAGAATATGCAGTTGGAGATATGGTCTTCTTAAAAATAAAACCCTACAGACAAGTCTCACTAAAGAAGAGAAGGAATTAAAAGCTCTCTCCAAAACTTTTTGGACCCTACAAAATCCTAGAAAGGATTGGTCAAGTGGCATACAGGAAAAAGCATCCATCCATCCCGTGTTCCATATTTCGCAGCTGAAAAAAAATGATGGGGGAACACCAAGCTGAACCAGCAGAATTACCCTACATACTGAGAACCATTAATAGCGTGCAGAACCAGAAGAAGCTTATGGATATCTCAAGAACAAAATTGCCAGATGGGATGTTTTAATCAAGTGGAAAGGACTATCTAGAAATGAAGCAACATGGGAAGATTATGATGAGATCCAGCAGCAATTCCCTAAGTTTCACCTTGAGGACAAGGTGAATTTGGAGAAGGGGTGTAATGATAGACCCCCTATCATTAAACAATACAACAGAAGAGTGAAGAAAGCCAATAACTGAAAATAGTCTGTTAATGAGTTTGTAGAAAAGTCGTAGTTAGGAAAGTAGCATAAATAGCACAGTTTGAGAGAGATATTCCTTGTTCATTCTTGAAAGATAGAATAACAGGAAGAGTGTTCTATAATTCGTGGAGGAGTATTACTATCAATAAAAGAATTCTTACTTGATATATATATTTGGGTCCCATCATTTTGTTAATTCTATTCCTTGCTTCGTTGTTTCTTAATTTTAGAAACGTTTTCCCTATGAAATATTGCTCCTTGGATAAGTGATGAAACACCACTTTTTGGTATGAATTCCCTCTTCTATTTAGATTCTGATAAGGGGTACATTCTGGAACTGAGTGGAACTCAATTCCTTTCACTCTCTACTGCCTTTCTCTTTCAGGAAATTACAGTAAATCTTCTTACAAAATTCTCATCTCCTTCCTCCTGAATTCTATTAGTATTTATACTAATCTTGCCAGCCTCTAACTAACTCACATGTGAGTGTTATTACAACTAATATAACAAACTAATGTAACAAACTCCAGCTGGTATGACTAACTTTTCCTTCTGCTGTAAACAAATCTAATTGGGGGTCTATCAATAAGTTTCTCTGGAATATACTTTGTAGTTCTTTGTGTTTTGGGAATCTGGGGACAAAGTCATCCCTGTCGTTAGGGAGGTGGCCATATCAGATTCTACAACGAGTCTTCGTGAGTCCACTACCATTGCTTTCAAGTTCTATGTTCAATCCTATGGATGTTGGATTTTCTAACGATACTCAGTTGAACGTTTATCACACACACACATTGTACGAAGGCCATTGCTCTAAAAGAAATTATGAAATCATAATCACACAACAATGGTTATTAGGAGTTGTATAGTTAACATGCGTGACATTTTGTTTATGTCTCAAACACTTTCTTTCTGGTGATTTCTTAATTTCTTTGTCCTCGTACTGTCTTGTCATGCAACAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCAAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTCTCATACATCAGTTCTATTCAATGAAATTTGCATAGTTATTTGCTGATGATGGAGCGAATTCAGTCACGGTGAGGAGGAAATGACCATCCAGGAAGTGATTCAAACGTGATTCTGTAAAGTCATCAACCTGAACGGCAAAAAGTTGCATTGACGATACATAGACTGAAATTGGCTTCTAAAGTTGATTACATAACAATTACGCGATCCTTCTTCTAGTTAACGATAATAAAACATGATATATGTTTCCATATTATGCTATTAATTTCTTGTTGTACTAGTTCCTTTGAATCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGGAACTACT

mRNA sequence

CTCTTTTTCGTGGAACAGCCCCCACTTGAACTTTCAGCCGCCCAAGAAATCCTCTCTCCGACAACCATTAGCAGCGACTACTAGTGACTGAGCGACACTAGAACCACCATCCAGCATCCCATTTCTGTCTTCATCAACCACGCCAGACTCCGAGTTCCAGCGACGGCGGCGCTTACATCCTTCGGTGGCGGTTACCATCGACACCCTGGAAACCCACGCGGTCTGAACACCCTGGAAGCGACGTTTTCCTCCCTTTCGGCAAGATCTTGATTTCCGAGAAGAATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAATGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCAAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAAGCTCTCATACATCAGTTCTATTCAATGAAATTTGCATAGTTATTTGCTGATGATGGAGCGAATTCAGTCACGGTGAGGAGGAAATGACCATCCAGGAAGTGATTCAAACGTGATTCTGTAAAGTCATCAACCTGAACGGCAAAAAGTTGCATTGACGATACATAGACTGAAATTGGCTTCTAAAGTTGATTACATAACAATTACGCGATCCTTCTTCTAGTTAACGATAATAAAACATGATATATGTTTCCATATTATGCTATTAATTTCTTGTTGTACTAGTTCCTTTGAATCTACTTTCTGTACATTAGAATTCAAATTACCACTTCGAAAGGAATAAACTTGATTGGAACTACT

Coding sequence (CDS)

ATGGCAACATTTGAACTCTACCGCAGATCAACGATTGGAATGTGTTTGACTGAAACTTTGGATGAAATGGTTCAGAATGGTACTCTTAGTCCCGAGCTTGCCATTCAGGTTCTTGTCCAGTTCGATAAGTCGATGACTGATGCTTTGGAATCACAAGTGAAAAGCAAGGTGACTATCAAGGGACATCTACACACCTATCGGTTCTGCGACAATGTTTGGACATTCATTTTGCAGGATGCCTCATTTAAAAATGAGGATTCAAGTGAGACTGTTGGAAGAATTAAAATAGTAGCATGTGACTCAAAGTTACTTTCACAATAA

Protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ
Homology
[Close]
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match: XP_008441202.1 (PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_008441203.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo])

HSP 1 Score: 213 bits (542), Expect = 1.45e-69
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match: XP_004138655.1 (transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 transcription initiation factor IIA subunit 2 [Cucumis sativus] >KGN63090.1 hypothetical protein Csa_022522 [Cucumis sativus])

HSP 1 Score: 209 bits (532), Expect = 4.86e-68
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match: XP_038897043.1 (transcription initiation factor IIA subunit 2 [Benincasa hispida])

HSP 1 Score: 209 bits (531), Expect = 6.91e-68
Identity = 103/106 (97.17%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDSSE+VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSSESVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match: XP_022941425.1 (transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_022981079.1 transcription initiation factor IIA subunit 2-like [Cucurbita maxima] >XP_023525811.1 transcription initiation factor IIA subunit 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 207 bits (528), Expect = 1.98e-67
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match: KAG7031763.1 (Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (527), Expect = 2.82e-67
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match: A2XZI2 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=39946 GN=TFIIAy PE=3 SV=2)

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match: Q0DLD3 (Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TFIIAy PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.3e-48
Identity = 93/106 (87.74%), Postives = 103/106 (97.17%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMT+ALE+QVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVSSGTLSPELAIQVLVQFDKSMTEALENQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFIL +ASFKNE+++E VG++KIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILTEASFKNEETTEQVGKVKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match: Q39236 (Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN=TFIIA-S PE=3 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 3.9e-48
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match: O74948 (Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa2 PE=3 SV=2)

HSP 1 Score: 122.1 bits (305), Expect = 3.8e-27
Identity = 53/99 (53.54%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 4   FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIKGHL 63
           +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMT+AL  +V+S++T KGHL
Sbjct: 5   YELYRRSSIGISLTDALDDLISQGKISPQLAMKVLFNFDKSMTEALAEKVRSRLTFKGHL 64

Query: 64  HTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK 103
            TYRFCD VWTFI+++ SF+ ++ + T  +I+IVAC ++
Sbjct: 65  DTYRFCDEVWTFIIKNPSFRFDNETVTSNKIRIVACATR 103

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match: B7Q1Q9 (Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis OX=6945 GN=IscW_ISCW010050 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-25
Identity = 51/101 (50.50%), Postives = 77/101 (76.24%), Query Frame = 0 

Query: 3   TFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK-G 62
           +++LYR +T+G  L E+LDE++Q G ++P LA++VL+QFDK++ +AL ++VK+++T K G
Sbjct: 2   SYQLYRNTTLGNTLQESLDELIQCGQITPHLALKVLLQFDKAINNALANRVKTRLTFKAG 61

Query: 63  HLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSK 103
           HL TYRFCDNVWTF+L+D  F+         ++KIVACD K
Sbjct: 62  HLSTYRFCDNVWTFVLKDVEFREVQELVKADKVKIVACDGK 102

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B2F6 (Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC103485407 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 7.01e-70
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LMF8 (Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G401990 PE=3 SV=1)

HSP 1 Score: 209 bits (532), Expect = 2.35e-68
Identity = 103/106 (97.17%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVT+K
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTVK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDASFKNEDSSE VGRIKIVACDSKLLSQ
Sbjct: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSENVGRIKIVACDSKLLSQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J100 (Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111480333 PE=3 SV=1)

HSP 1 Score: 207 bits (528), Expect = 9.59e-68
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FTM1 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111446721 PE=3 SV=1)

HSP 1 Score: 207 bits (528), Expect = 9.59e-68
Identity = 102/106 (96.23%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKVTIK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVTIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match: A0A6J1F935 (Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111443199 PE=3 SV=1)

HSP 1 Score: 206 bits (524), Expect = 3.91e-67
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 106
           GHLHTYRFCDNVWTFILQDA+FKNEDS ETVGRIKIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDATFKNEDSQETVGRIKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. TAIR 10
Match: AT4G24440.1 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-49
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

[Close]
BLAST of MELO3C008106.jh1 vs. TAIR 10
Match: AT4G24440.2 (transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) )

HSP 1 Score: 191.8 bits (486), Expect = 2.8e-49
Identity = 93/106 (87.74%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTDALESQVKSKVTIK 60
           MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMT+ALESQVK+KV+IK
Sbjct: 1   MATFELYRRSTIGMCLTETLDEMVQSGTLSPELAIQVLVQFDKSMTEALESQVKTKVSIK 60

Query: 61  GHLHTYRFCDNVWTFILQDASFKNEDSSETVGRIKIVACDSKLLSQ 107
           GHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACDSKLL+Q
Sbjct: 61  GHLHTYRFCDNVWTFILQDAMFKSDDRQENVSRVKIVACDSKLLTQ 106

The following BLAST results are available for this feature:
BLAST of MELO3C008106.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441202.11.45e-69100.00PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo] >XP_0084... [more]
XP_004138655.14.86e-6897.17transcription initiation factor IIA subunit 2 [Cucumis sativus] >XP_011649891.1 ... [more]
XP_038897043.16.91e-6897.17transcription initiation factor IIA subunit 2 [Benincasa hispida][more]
XP_022941425.11.98e-6796.23transcription initiation factor IIA subunit 2-like [Cucurbita moschata] >XP_0229... [more]
KAG7031763.12.82e-6795.28Transcription initiation factor IIA subunit 2 [Cucurbita argyrosperma subsp. arg... [more]
BLAST of MELO3C008106.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2XZI22.3e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. indica OX=3... [more]
Q0DLD32.3e-4887.74Transcription initiation factor IIA subunit 2 OS=Oryza sativa subsp. japonica OX... [more]
Q392363.9e-4887.74Transcription initiation factor IIA subunit 2 OS=Arabidopsis thaliana OX=3702 GN... [more]
O749483.8e-2753.54Transcription initiation factor IIA subunit 2 OS=Schizosaccharomyces pombe (stra... [more]
B7Q1Q94.7e-2550.50Transcription initiation factor IIA subunit 2 OS=Ixodes scapularis OX=6945 GN=Is... [more]
BLAST of MELO3C008106.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B2F67.01e-70100.00Transcription initiation factor IIA subunit 2 OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0LMF82.35e-6897.17Transcription initiation factor IIA subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_... [more]
A0A6J1J1009.59e-6896.23Transcription initiation factor IIA subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FTM19.59e-6896.23Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1F9353.91e-6795.28Transcription initiation factor IIA subunit 2 OS=Cucurbita moschata OX=3662 GN=L... [more]
BLAST of MELO3C008106.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G24440.12.8e-4987.74transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
AT4G24440.22.8e-4987.74transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 4..49
e-value: 1.8E-22
score: 79.1
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 4..49
e-value: 3.15063E-22
score: 79.9172
IPR009083Transcription factor IIA, alpha-helical domainGENE3D1.10.287.190coord: 3..54
e-value: 4.3E-24
score: 86.1
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 1..106
e-value: 3.7E-49
score: 163.4
IPR003194Transcription initiation factor IIA, gamma subunitPANTHERPTHR10966TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 55..105
e-value: 1.5E-23
score: 84.4
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 52..102
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 60..101
e-value: 2.3E-21
score: 75.7
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 57..102
e-value: 1.63598E-23
score: 83.0659
NoneNo IPR availablePANTHERPTHR10966:SF8TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 2coord: 1..106
NoneNo IPR availableSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 4..54

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008106.jh1.t1MELO3C008106.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex