MELO3C007029.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C007029.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	RRM domain-containing protein
Location	chr08: 317559 .. 320746 (+)
RNA-Seq Expression	MELO3C007029.jh1
Synteny	MELO3C007029.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAAATAAATTTTCCAAAATTAAAACCGTCCGGTGTTATGAAAATAAGAAACCGCGAATTCGAGCTGTGAGGTGCGATCGATCGATCGAACGAGCAAAGCTCCAGGACGTGGACTGAGCAGATTTGGGCTCCAACATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAGTAAATTCACTTCCCTCTTCCTTTCGTTTCATTTGATTTTCTTGATTTCCCATTTCGAATTTTCCCCCCAATTTGTCGTGTTTGCTGTGATTTCAGTTTTTCTGTTTCTCCTCTTAGGGTTTTCCTGTTTCCTTCCTTTTATTTTTAGCTTTATTGGTTGCTGTCATGGTTTTGCCCTATTGTTGTTTTTTATGCTATTTTTGTGCCTTTGGTTTACTTTTCAAGGCTTTTTTCTGCTGAAAGTTTACGCTGTTGTCTGCCTGATTACTCTAATCAGATTGGTTTAGTTATTTGTTTGTTTATTATTAGCAATGATGAAATTGGTACGGAAGAATAGAAGACACCATGAAAGTTCGCGGTGTTCATTATGAATAACCTAGAAAGTTAGATATTCAATGCCATTGAATTGAAAAATTCCCAAGTTTATTAAGGATTGTTTATGGAGTTGTAAGAAAGAAATTGTCCCTACACGAAAAAGGGTGGGGGGTGATAAATTATCCCCCTCCCCAAGAAAGGGAAAACTGCAAGAAAGTCTTTGAACCTAAATTAAAAAACCTATCGCAAGTGAAATTGTTTATGAAACTGCAAACTACCTAGCAGTGAGAGCTGACCAGGACTTTGACCATGCACCTGTTTAAAAGGAAAATGAACTGTATATAAACTGGTTCAATTATAACACATCCTGGTGACAATGTTAAAAAAAAAAAAAAAAATCTTTTGTTGAATTGATCTAGATTGAAACTTTTCTTATATTTCCGTCTCTGCGTGTAGGTGACTAGAGATACAGTCTTCATTGTCTTGCTAATGGAAGTTTTAATGGCATAGTTTATTGCTTATTTGGCACACAAAACTTTTAGTTAAATAAATTCAGAAGCTAAAAGGATAGTTTTTTTATTTTTTTTTTAATTTTTTTAACTTTCCATGAAGGTCACACATATCAATTTGGTCCAATTTGATTCCTGAAAATGGAATTAGGAAGTAAAAGCATAATATTGTTGACACCTTAGATGTCCACTAACATGATGATAATGATGCTTAATGCAAGTGATGTGGAGCGGATAATAAAGCATTTATGGAGTACGGGAACTCATGTATTGATAATTATGTAGACTTTTGAGTTTCCACAGATCCTTTTTTCCTTATTTTTAAGAATACGGGCATAAAGGATTAATAATTTATTTGAAGTGAAAAAAAAAAGTTAAGGTGAACTGTGGCCCTTGGTGTATATATATGAAAATTATTCAGATCTTCCCGTTTGCCTTTTTTCTTCGAGTTTCCCAGTCAACTTCCTTCCCTCAATTTTCTTTTTATATGTTGTCCTGCAATATGAATGACTTTCACCCCGACCCCATTATCCAACCTTTGTCACGTTAATGTGGGTTTTCATGGAAAACTGTTGGTGTCGTTTTTCACTTATTTTAATTGATTCAAGAAAGGTGAGAAGAGAAGAAACAAAGTAGCATTACCCTCCTTTCTATTTGTTTAGCTATTTTTATTTTAATTTTTTCCTGTTTTCGTTATACTGATAATTTATTTAGAGTGCAAGTTCTGTTTATGCATGGTGTAACTTAATATTAGTGAAAGTACAAAGTCGATAGAAAACAAATACAATAGGAAAAGAACCTTTCCAAACTATCTTCTGAAGTAAACTAATTGAAAACATTTTTATTAAGAAAGTAGATTTCCAATAATTTGTGAGAGAAGTTTAAGAGGGTATTGTTCACTTCTAATTCATATGCCTTCTGAAACCAACTTTTTCTTCATGAGTTTTCTTCTGCTATTTTCTCGTTCTTGTTTTTTTTAATGTCTTGTGAAGCCTTCCGGAATGTCATTATGTCTAGATTTTAAGAAGTCTTAGGAGGTTATTGCAATATCGAATCAATGGAATACTTTTTCTCGAGCACCTTTGAATGCTCAAATGCTGCTTCCATTTAGATTTTTTTTTTAATTAAAAAACTGTATGCAGATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGGTAATTGCAGTTTTTGTTGGCTAATCTCCAACCAAGTCGAACAAGCTTTTTAATCTTGTTGCTTCACTTATCAACCCATGGCAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGGTTAAAAACTTCACCTAGCTTTGTCTTTTGTAGATAATGTTGTTAATGTTGCTTCACCTAGATTTGTCTTGAAAGTTAATGTTGTTTCTTCTGTCTCCCAAAACCAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGAGCTTCCTTTTTCTGAGAAGCACAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAATGAGATTTAGATCAATTTCAAAGAATCTATGAGTGTTGAAGTGTTTGCTGAGATGGATTCATTTCATTTATTTTCATAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAGCTCTTCTCCTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTTACTGCATCTCGCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGAATATGCGGAAATTCGTAAAGCAAATACCTTTACAAGTCCAAAAAATCCTTATCCAGTAATCAGTTTCCAAATTTGAAGGGCATTATGTTTTTGCAATCAGATTTTAATTTCTTGACTTGCA

mRNA sequence

AACAAAATAAATTTTCCAAAATTAAAACCGTCCGGTGTTATGAAAATAAGAAACCGCGAATTCGAGCTGTGAGGTGCGATCGATCGATCGAACGAGCAAAGCTCCAGGACGTGGACTGAGCAGATTTGGGCTCCAACATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGAGCTTCCTTTTTCTGAGAAGCACAATATTTATATAGGAAAGAGATGGCTTGACAGTTAATGACAGTTATGCCCAATGAGATTTAGATCAATTTCAAAGAATCTATGAGTGTTGAAGTGTTTGCTGAGATGGATTCATTTCATTTATTTTCATAGTTCCAAGCGTTAGATGCTGATAAGATTGTGAAGCTCTTCTCCTGTATTTTGTAACAGGAACAAAATATCTGTATTTGTAAATACACTGTTTAGGACACTTTACTGCATCTCGCAGTGCGTATTGCTTTTTGTAGCGTTGCAATTCAGATTGTGGAATATGCGGAAATTCGTAAAGCAAATACCTTTACAAGTCCAAAAAATCCTTATCCAGTAATCAGTTTCCAAATTTGAAGGGCATTATGTTTTTGCAATCAGATTTTAATTTCTTGACTTGCA

Coding sequence (CDS)

ATGTGGGCGACAACCGTCTCCTTACCTTCAATTTCAAATCTTCGGGGACCCGTTTTTCCGAATAATCCGCTTGTCGCTTCCAATCGCCCATCTCTGAATCTTCGAGCTTCTTTCTTTGATTATCCTCTTGCCAGTAGACTCATGGTTAGAAATTTACCATACTCCACCAATGAGAGTCGACTGCAAGAAGAATTTTCAAATTTTGGTGAGATTGCTGAAGTGTTGTTAGCAAAAGATCGATCAACAAAAAGACCAAAAGGATATGCGTTTATTCAATACACTTGCCAAGACGATGCGATGCTTGCACTGGAAAATATGGATTGCAAGATATTTGATGGAAGGACGATCTATGTGGAAATTGCAAAACCTGGTAGCGGTTCCTTTGGAGGATACCCAAGAACCTCTGGACCCCCAAAAGAGCGGCCTAACGTGGAGCAAGAAGATATAGCAGATTGTTGGTATTGA

Protein sequence

MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY

Homology

[Close]

BLAST of MELO3C007029.jh1 vs. NCBI nr
Match: XP_008439484.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 320 bits (821), Expect = 1.44e-110
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154
           AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of MELO3C007029.jh1 vs. NCBI nr
Match: XP_004134540.1 (glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 hypothetical protein Csa_003456 [Cucumis sativus])

HSP 1 Score: 295 bits (754), Expect = 2.73e-100
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SNLRGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPN----VEQEDIADCWY 154
           A PGSGSFGGYPR SGPPKERPN    V+QED+ADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of MELO3C007029.jh1 vs. NCBI nr
Match: XP_022977992.1 (small RNA-binding protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 261 bits (666), Expect = 6.66e-87
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP--NVEQEDIADCWY 154
           AKPGSGSFGGYP TSGPPKERP   +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.jh1 vs. NCBI nr
Match: XP_038883016.1 (organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa hispida])

HSP 1 Score: 260 bits (665), Expect = 1.74e-86
Identity = 129/174 (74.14%), Postives = 137/174 (78.74%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVR---------- 60
           MWA TVS PSISNLRGP+ PNN    S RPSLN RASF DYPLASRL+VR          
Sbjct: 1   MWAATVSFPSISNLRGPILPNNRTDGSKRPSLNFRASFSDYPLASRLLVRTSLNFEGSNL 60

Query: 61  ----------NLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAM 120
                     +LPYST ESRLQEEFSNFGEIAEVLLAKD+ TKRPKGYAFIQYTCQDDAM
Sbjct: 61  NSMRVVLRREDLPYSTKESRLQEEFSNFGEIAEVLLAKDQLTKRPKGYAFIQYTCQDDAM 120

Query: 121 LALENMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154
           LALENMDCK FDGR IYVE+AKPGS SFGGYPRTSGPPKERP VE +++ADCWY
Sbjct: 121 LALENMDCKKFDGRMIYVELAKPGSSSFGGYPRTSGPPKERPKVELQEVADCWY 174

[Close]

BLAST of MELO3C007029.jh1 vs. NCBI nr
Match: XP_023543104.1 (small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258 bits (658), Expect = 1.10e-85
Identity = 128/156 (82.05%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP--NVEQEDIADCWY 154
           AKPGSGSF GYP TSGPPKERP   +  E++ADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot
Match: Q54PB2 (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           + R+ VRNL YST E  L++ FS FG+I+E+ +  D  +K+ KG AFI Y   ++A+ AL
Sbjct: 360 SGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQAL 419

Query: 104 ENMDCKIFDGRTIYV 119
            +MD K+F GR I+V
Sbjct: 420 NDMDGKVFQGRLIHV 434

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE 104
           ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGP-PKERP 143
            M  K  DGR I+VE AK  S      PR   P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-12
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           +AS+L +  L + T E  L E FS  G++ E  +  DR + R KG+ F+ +   D+A  A
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 103 LENMDCKIFDGRTIYVEI--AKPGSGSFGGYPRTSGPP 139
           L   + +  +GRTI+V+   AK   G  GGYP   GPP
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPP 129

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-12
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++S+L V  L + T++S L++ F++FGE+ E  +  DR T R +G+ F+ ++C+D A  A
Sbjct: 33  MSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNA 92

Query: 103 LENMDCKIFDGRTIYVEIAKPGS----GSFGG 131
           ++ MD K  +GR I V +A   S     SFGG
Sbjct: 93  IKEMDGKELNGRQIRVNLATERSSAPRSSFGG 124

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot
Match: Q9DED4 (Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALEN 105
           +L +  L + TNE  L++ FS +G+I+EV++ KDR TKR +G+ F+ +   DDA  A+  
Sbjct: 6   KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 106 MDCKIFDGRTIYVEIAKPGSGS-FGGY 132
           M+ K  DGR I V+ A   SG   GGY
Sbjct: 66  MNGKAVDGRQIRVDQAGKSSGDRRGGY 92

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AYG0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484270 PE=4 SV=1)

HSP 1 Score: 320 bits (821), Expect = 6.97e-111
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154
           AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY
Sbjct: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KL21 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV=1)

HSP 1 Score: 295 bits (754), Expect = 1.32e-100
Identity = 143/158 (90.51%), Postives = 147/158 (93.04%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWATTVS PS+SNLRGP+FPNN LVASNR SLNLRASFFDYPLASRLMVRNLPYSTNESR
Sbjct: 1   MWATTVSFPSVSNLRGPIFPNNRLVASNRISLNLRASFFDYPLASRLMVRNLPYSTNESR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE MDCKIFDGR IYVEI
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALETMDCKIFDGRMIYVEI 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPN----VEQEDIADCWY 154
           A PGSGSFGGYPR SGPPKERPN    V+QED+ADCWY
Sbjct: 121 ATPGSGSFGGYPRASGPPKERPNERANVDQEDVADCWY 158

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IJY1 (small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111478117 PE=4 SV=1)

HSP 1 Score: 261 bits (666), Expect = 3.23e-87
Identity = 129/156 (82.69%), Postives = 137/156 (87.82%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  NN L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLNNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP--NVEQEDIADCWY 154
           AKPGSGSFGGYP TSGPPKERP   +  E++ADCWY
Sbjct: 121 AKPGSGSFGGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EGU7 (small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433254 PE=4 SV=1)

HSP 1 Score: 256 bits (653), Expect = 3.09e-85
Identity = 127/156 (81.41%), Postives = 136/156 (87.18%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA TVS PS+SNLRGP+  +N L +S R SLNLRASF DYPLASRLMVRNLPYSTNE+R
Sbjct: 1   MWAATVSFPSLSNLRGPIPLSNRLDSSKRQSLNLRASFSDYPLASRLMVRNLPYSTNENR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFSNFGEIAEVLLAKDR TK PKGYAFIQYT QDDAMLALENMDCK FDGRTIYVE+
Sbjct: 61  LQEEFSNFGEIAEVLLAKDRLTKTPKGYAFIQYTSQDDAMLALENMDCKKFDGRTIYVEL 120

Query: 121 AKPGSGSFGGYPRTSGPPKERP--NVEQEDIADCWY 154
           AKPGSGSF GYP TSGPPKERP   +  E++ADCWY
Sbjct: 121 AKPGSGSFRGYPVTSGPPKERPIPKLVPEEVADCWY 156

[Close]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CXC0 (glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111015686 PE=4 SV=1)

HSP 1 Score: 254 bits (649), Expect = 1.18e-84
Identity = 120/154 (77.92%), Postives = 135/154 (87.66%), Query Frame = 0


Query: 1   MWATTVSLPSISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLPYSTNESR 60
           MWA+TVS P + N R P+  +NP   + R SLNLRASFFDYPLASR+MVRNLPYST+E R
Sbjct: 1   MWASTVSFPCLLNPRFPILLSNPTHGTARQSLNLRASFFDYPLASRVMVRNLPYSTDEGR 60

Query: 61  LQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDGRTIYVEI 120
           LQEEFS+FGE+AEVLLAKDR TKRP+GYAFIQYTCQDDAMLALENMD K FDGRTIYVE+
Sbjct: 61  LQEEFSSFGEVAEVLLAKDRVTKRPRGYAFIQYTCQDDAMLALENMDGKKFDGRTIYVEV 120

Query: 121 AKPGSGSFGGYPRTSGPPKERPNVEQEDIADCWY 154
           A+PGS SFGGYPRTSGPPKERP +E E++ADCWY
Sbjct: 121 ARPGSDSFGGYPRTSGPPKERPKLELEEVADCWY 154

[Close]

BLAST of MELO3C007029.jh1 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 84/164 (51.22%), Postives = 110/164 (67.07%), Query Frame = 0


Query: 1   MWATTVSLP-------SISNLRGPVFPNNPLVASNRPSLNLRASFFDYPLASRLMVRNLP 60
           MW+ T+S P       S+ N R   FP             ++AS F+YPLAS++MVRNLP
Sbjct: 1   MWSATLSFPSFVASSSSLPNYRNLRFP------------KIKASLFNYPLASKIMVRNLP 60

Query: 61  YSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALENMDCKIFDG 120
           +ST+E  L+ EFS FGEIAEV L KD + KR KGYAFIQ+T QDDA LA+E MD ++++G
Sbjct: 61  FSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNG 120

Query: 121 RTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQ---EDIADCWY 155
           R IY++IAKPG   F G PRTSGPP++    E+   +++ADCWY
Sbjct: 121 RMIYIDIAKPGKRDFQGLPRTSGPPEKSDEPEEAANDEVADCWY 152

[Close]

BLAST of MELO3C007029.jh1 vs. TAIR 10
Match: AT5G08695.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-15
Identity = 41/104 (39.42%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 44  ASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLAL 103
           A RL V  LPYST E  L E FS FG+I+EV L  D+ T+  +G AF+ Y   + A +A+
Sbjct: 226 AGRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAM 285

Query: 104 ENMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPKERPNVEQE 148
           + +D   F GRT+++  AKP + S      +S  PK      +E
Sbjct: 286 DKLDKLPFQGRTLHILPAKPRAMSAKQVDNSSNLPKSFKKEREE 329

[Close]

BLAST of MELO3C007029.jh1 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 77.8 bits (190), Expect = 8.5e-15
Identity = 36/80 (45.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 43  LASRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLA 102
           ++++L V  L   T +  L++ FS FG+I E  L +D  T+RPKG+ FI +  +DDA  A
Sbjct: 5   ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKA 64

Query: 103 LENMDCKIFDGRTIYVEIAK 123
           L+++D KI DGR I+VE+AK
Sbjct: 65  LKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of MELO3C007029.jh1 vs. TAIR 10
Match: AT4G19610.1 (nucleotide binding;nucleic acid binding;RNA binding )

HSP 1 Score: 75.5 bits (184), Expect = 4.2e-14
Identity = 41/94 (43.62%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 46  RLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALEN 105
           RL VRNLPY+  E  L E FS FG+I+EV L  D+ TKR +G A+I Y   + A  A+E 
Sbjct: 295 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEE 354

Query: 106 MDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGPPK 140
           +D   F GR +++  AK    S      TS  PK
Sbjct: 355 LDNSSFQGRLLHILPAKHRETSDKQVNDTSNLPK 388

[Close]

BLAST of MELO3C007029.jh1 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-13
Identity = 36/99 (36.36%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 45  SRLMVRNLPYSTNESRLQEEFSNFGEIAEVLLAKDRSTKRPKGYAFIQYTCQDDAMLALE 104
           ++L V  L + T E  L++ F  FG +  + +  D+   RPKG+AF++Y  +++AM A++
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 105 NMDCKIFDGRTIYVEIAKPGSGSFGGYPRTSGP-PKERP 143
            M  K  DGR I+VE AK  S      PR   P P+ +P
Sbjct: 137 GMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKP 175

The following BLAST results are available for this feature:

BLAST of MELO3C007029.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439484.1	1.44e-110	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_004134540.1	2.73e-100	90.51	glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus] >KGN49509.1 ...	[more]
XP_022977992.1	6.66e-87	82.69	small RNA-binding protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_038883016.1	1.74e-86	74.14	organelle RRM domain-containing protein 6, chloroplastic isoform X3 [Benincasa h...	[more]
XP_023543104.1	1.10e-85	82.05	small RNA-binding protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C007029.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54PB2	1.3e-12	46.67	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=...	[more]
Q9FX45	1.7e-12	36.36	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	1.7e-12	37.76	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	2.3e-12	38.04	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q9DED4	2.9e-12	42.53	Cold-inducible RNA-binding protein B OS=Xenopus laevis OX=8355 GN=cirbp-b PE=1 S...	[more]

BLAST of MELO3C007029.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYG0	6.97e-111	100.00	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0KL21	1.32e-100	90.51	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526430 PE=4 SV...	[more]
A0A6J1IJY1	3.23e-87	82.69	small RNA-binding protein 11, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1EGU7	3.09e-85	81.41	small RNA-binding protein 11, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1CXC0	1.18e-84	77.92	glycine-rich RNA-binding protein 4, mitochondrial OS=Momordica charantia OX=3673...	[more]

BLAST of MELO3C007029.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20030.1	1.4e-41	51.22	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G08695.1	2.9e-15	39.42	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	8.5e-15	45.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G19610.1	4.2e-14	43.62	nucleotide binding;nucleic acid binding;RNA binding	[more]
AT1G73530.1	1.2e-13	36.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 46..119 e-value: 4.7E-24 score: 95.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 47..116 e-value: 2.7E-19 score: 68.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 45..123 score: 18.444448
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 40..148 e-value: 4.3E-27 score: 96.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..154
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 24..148
None	No IPR available	PANTHER	PTHR13952:SF19	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1	coord: 24..148
None	No IPR available	CDD	cd12316	RRM3_RBM19_RRM2_MRD1	coord: 46..118 e-value: 2.6659E-25 score: 90.0492
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 16..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007029.jh1.t1	MELO3C007029.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding