MELO3C006829.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C006829.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description40S ribosomal protein S20
Locationchr06: 6811285 .. 6813229 (-)
RNA-Seq ExpressionMELO3C006829.jh1
SyntenyMELO3C006829.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGAACCCGAGCCCACTTTCAGGAAAGGAAAAAAAAAACCCTAATAGCTCCCGAATCATATAAATTGTAATATCGTCACTCTCGTTCTCCTTCTTTCAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGTTTCTCTATTTTTCTTATCTCCATTGCTTATTGTTTCTTGTATTTTGGAATTGTTTCCTGTGGTTGAGTTCTTTTTGTCAATATTGAAACCACTGTTCGGTTGGTTCAACAGATTCATTTTGGAAACAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGGTATTCACTTTTACATGCTGGATTATTGTTGTTTTTTTTTTTCTTCTTCTTTTGTAATTTAGTGAATATGGGACTCAAATGAGACTGCGTTTTCGTTTGTTTAGTTTGTTAACTTTCATGTCAAGTGAGTAGAGGATGATTGGTTGGTAATTTTCTTGCAATGCTCTGATTATGAATTGAATACGATATAATATTGTAAACACGTGAACAAATTATTGAGAGATAGTATTGTTGGATAAAATGGATGAATGATCCTTATTTTATGCCTAATGACCAACGCGAGTTTAGGGGTTGTTAAATTACTTCTTAAGATTGTAGTTTGTTTTTCTGGATGTTGGTGCATTGTTAATCCTCACTCTATTGATTTCTACTGCATAGTTGGCTTATCATGTAATTGGGTTTAGGGTTTTTCAAAGTTGTCCAATTTACGGCCCTTCTGTCAATTAGTTTGTTTGATGTCATTTTTAATCAATAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTATTTTGTTTTCCACTTATCTATGATCTTCTGAGTTTAAGTTCATCTTTTCGTGGATTTGAAACTAATATATGTAATATCCCTTCATCGCGGTCCATTGCCATTTGGGAACTCATTTCTTGTGACGTCATTTCAATATTTGCTATCAAATTTGGAAAGAGGGGTGGATTCTTTTGGTTTTTATAGATATGAGTCCGATGTTGAAAAATCATCTAAGGCCAATTCTTAGTGAAATCATTTCTTTGTTCGGTTTTTGATTGTAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCACGGTTCTTTATATTCGAATCACAGCTTCTTGGTTTTTTCTTCGACAGGTGAATAAATAAGGACATATAGGAAGAAAAGTTTCAAAGGTAAATAAAATTATAAATGGCGTCTAGGTGAGTCTGTCGTTATGATGACATACATATAAACTAGCCAAATGAGCTCAACTCATTTCTCTTTAGAAGTTGGAGAACCAATTCTTTTAACTCTATTTAAGTAGCAAGCTCCTTTCCCAGGATCAAAAGAAATTTAAGAATTGATGTAAACAATT

mRNA sequence

ATGATCGAACCCGAGCCCACTTTCAGGAAAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCACGGTTCTTTATATTCGAATCACAGCTTCTTGGTTTTTTCTTCGACAGGTGAATAAATAAGGACATATAGGAAGAAAAGTTTCAAAGGTAAATAAAATTATAAATGGCGTCTAGGTGAGTCTGTCGTTATGATGACATACATATAAACTAGCCAAATGAGCTCAACTCATTTCTCTTTAGAAGTTGGAGAACCAATTCTTTTAACTCTATTTAAGTAGCAAGCTCCTTTCCCAGGATCAAAAGAAATTTAAGAATTGATGTAAACAATT

Coding sequence (CDS)

ATGATCGAACCCGAGCCCACTTTCAGGAAAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGAGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGA

Protein sequence

MIEPEPTFRKEAAGYAIVEISFAPAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Homology
[Close]
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match: XP_022922646.1 (40S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 243 bits (619), Expect = 8.31e-80
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 151
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match: XP_022922647.1 (40S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 243 bits (619), Expect = 8.31e-80
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 151
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (610), Expect = 6.50e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (602), Expect = 1.08e-77
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match: XP_024198508.1 (40S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal protein S10 [Rosa chinensis])

HSP 1 Score: 236 bits (601), Expect = 1.53e-77
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-55
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.2 bits (544), Expect = 1.0e-54
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 199.9 bits (507), Expect = 2.0e-50
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0 

Query: 30  MAYA-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 89
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 90  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 149
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 150 ADQ 152
           +DQ
Sbjct: 126 SDQ 128

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.8e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 44  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 103
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 104 EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 151
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.3e-41
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 34  AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 93
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 94  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 151
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match: A0A6J1E3W2 (40S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 243 bits (619), Expect = 4.02e-80
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 151
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match: A0A6J1E4N9 (40S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430590 PE=3 SV=1)

HSP 1 Score: 243 bits (619), Expect = 4.02e-80
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0 

Query: 24  PAVPGSMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 83
           P + GSMAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK
Sbjct: 28  PRITGSMAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVK 87

Query: 84  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 143
           GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE
Sbjct: 88  GPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVE 147

Query: 144 VEVTIADQ 151
           VEVTIADQ
Sbjct: 148 VEVTIADQ 155

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 3.15e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 3.15e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 3.15e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 150 DQ 151
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.2 bits (552), Expect = 8.8e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 30  MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 89
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 90  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 149
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 150 D 151
           D
Sbjct: 121 D 121

[Close]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.2 bits (544), Expect = 7.5e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 31  AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 90
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 91  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 150
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of MELO3C006829.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922646.18.31e-8096.8840S ribosomal protein S20-2-like isoform X1 [Cucurbita moschata][more]
XP_022922647.18.31e-8096.8840S ribosomal protein S20-2-like isoform X2 [Cucurbita moschata][more]
XP_008439109.16.50e-79100.00PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r... [more]
XP_022985516.11.08e-7799.1840S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_024198508.11.53e-7798.3640S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal prot... [more]
BLAST of MELO3C006829.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY61.2e-5591.7440S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492001.0e-5490.8340S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356862.0e-5083.7440S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234037.8e-4274.7740S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH81.3e-4170.0940S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of MELO3C006829.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E3W24.02e-8096.8840S ribosomal protein S20-2-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A6J1E4N94.02e-8096.8840S ribosomal protein S20-2-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5A7VKH93.15e-79100.0040S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1IAH13.15e-79100.0040S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=... [more]
A0A6J1FSX53.15e-79100.0040S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P... [more]
BLAST of MELO3C006829.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.28.8e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.18.8e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.38.8e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G45030.17.5e-5690.83Ribosomal protein S10p/S20e family protein [more]
AT5G62300.17.5e-5690.83Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 108..122
score: 52.69
coord: 86..101
score: 42.43
coord: 51..64
score: 44.51
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 30..150
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 49..148
score: 18.389648
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 53..147
e-value: 2.0E-38
score: 143.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 53..147
e-value: 1.3E-27
score: 95.9
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 36..150
e-value: 1.2E-48
score: 166.0
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 51..148
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 50..148
e-value: 3.5E-40
score: 134.4
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 30..150
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 75..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C006829.jh1.t1MELO3C006829.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome