MELO3C006272 (gene) Melon (DHL92) v4

Overview


Name	MELO3C006272
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pentatricopeptide repeat-containing protein
Location	chr06: 2130609 .. 2131863 (+)
RNA-Seq Expression	MELO3C006272
Synteny	MELO3C006272

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTCAATGTGCGTCGCCTGCAGAACTCTTTTAAGGTACACTGGTCTTCTTCTCTGAGTTCATCTCAAACCCTAATTCCGAAATTCTTTAACGAGTATTATTATTCGTCTGATTCGAGTACTCGTTCTTTTGATTATATTGCTCAATTTTTGCCTTCAAACGATGGTACTTTGAAATTGATCTCTGTGAATTCCGTGACTACAAATGACCGCCGTAGAGTCAGTGTTGGGTTATCCAAAGCGGTTAAGCTGCCTCAGGGATACGTATTGAAGGGATTATCGAGAAATTTCTGTCCATTTTTACTGGTCAAGATTATGAAACTGTTTGAATGTCGGGAAACCGCGTTTGCGTTCTTCAAGCTAGCATTTAAGGACGATTCTGAAGAAACTGTTAAGTCTTGTTGTGTGCTGGCACATCTCTTAGCTGCAGAACAACTTCGTTTTCTAGCGCAAGATATTGTTTCGTGGGTTGTTGCTAGAATTGGTCCAGGAAGGAGCAAGAATTTGGCGGCATTTATGTGGGAAGGTCACCGTATGTACGAATCTGATTTTTCAGTGTTGAACACTCTAATGCGGGCGTTTATGAAGTCAGAAATGCATTTTGAGGCTTTAGAAATATTGAGTAAGATGCGGGAGGTGGGAGTGACGCCAAATCCATCGGCCATTTCGATTCTTTTTAGATTGCTGATTAGAGCTGGCGATTGTGGTGCTGTATGGAAGTTGTTTGGAGATGTGGTTCGAAAGGGACCTTGCCCTAATAATTTTATATTTAACTTATTGATTCTTGAGTTTTGTAGAAAAGGTTGGACTAGGATTGGAGAAGCTCTGTTGCACGTAATGGGCAAATTTAGATGTGAACCAGATGTTTATTCCTATAATATCGTGATACATGCGAACTGCTTAAAAGGGCAATCATCATATGCACTTCATTTGGTGAATCTAATGATCGCAAATGACTGTAAACCTAGCATTGCCACATTCTGTACCATCATTGATGCCTTCTGCAAGGAGGGTAACATAGAGTTAGCTAGGAAATTTTTTGATGAAATTGAAGACATGGGTCTTTCTCAGAATACTAGAGTCTATAATATCATGATAAGTGGGTATGTTAAGGCAAGAGACATTGGTCAAGCAAACTTGCTATTTGAAGAAATGAGGACCAAGGATATAGTTCCAGATGGCATTACTTTTAATATATTGGTTGCTGGCCATTACAGATATGGAAAGGAGGAGGATGGGGATCGATTATTAA

mRNA sequence

ATGTTTGTCAATGTGCGTCGCCTGCAGAACTCTTTTAAGGTACACTGGTCTTCTTCTCTGAGTTCATCTCAAACCCTAATTCCGAAATTCTTTAACGAGTATTATTATTCGTCTGATTCGAGTACTCGTTCTTTTGATTATATTGCTCAATTTTTGCCTTCAAACGATGGTACTTTGAAATTGATCTCTGTGAATTCCGTGACTACAAATGACCGCCGTAGAGTCAGTGTTGGGTTATCCAAAGCGGTTAAGCTGCCTCAGGGATACGTATTGAAGGGATTATCGAGAAATTTCTGTCCATTTTTACTGGTCAAGATTATGAAACTGTTTGAATGTCGGGAAACCGCGTTTGCGTTCTTCAAGCTAGCATTTAAGGACGATTCTGAAGAAACTGTTAAGTCTTGTTGTGTGCTGGCACATCTCTTAGCTGCAGAACAACTTCGTTTTCTAGCGCAAGATATTGTTTCGTGGGTTGTTGCTAGAATTGGTCCAGGAAGGAGCAAGAATTTGGCGGCATTTATGTGGGAAGGTCACCGTATGTACGAATCTGATTTTTCAGTGTTGAACACTCTAATGCGGGCGTTTATGAAGTCAGAAATGCATTTTGAGGCTTTAGAAATATTGAGTAAGATGCGGGAGGTGGGAGTGACGCCAAATCCATCGGCCATTTCGATTCTTTTTAGATTGCTGATTAGAGCTGGCGATTGTGGTGCTGTATGGAAGTTGTTTGGAGATGTGGTTCGAAAGGGACCTTGCCCTAATAATTTTATATTTAACTTATTGATTCTTGAGTTTTGTAGAAAAGGTTGGACTAGGATTGGAGAAGCTCTGTTGCACGTAATGGGCAAATTTAGATGTGAACCAGATGTTTATTCCTATAATATCGTGATACATGCGAACTGCTTAAAAGGGCAATCATCATATGCACTTCATTTGGTGAATCTAATGATCGCAAATGACTGTAAACCTAGCATTGCCACATTCTGTACCATCATTGATGCCTTCTGCAAGGAGGATATGGAAAGGAGGAGGATGGGGATCGATTATTAA

Coding sequence (CDS)

ATGTTTGTCAATGTGCGTCGCCTGCAGAACTCTTTTAAGGTACACTGGTCTTCTTCTCTGAGTTCATCTCAAACCCTAATTCCGAAATTCTTTAACGAGTATTATTATTCGTCTGATTCGAGTACTCGTTCTTTTGATTATATTGCTCAATTTTTGCCTTCAAACGATGGTACTTTGAAATTGATCTCTGTGAATTCCGTGACTACAAATGACCGCCGTAGAGTCAGTGTTGGGTTATCCAAAGCGGTTAAGCTGCCTCAGGGATACGTATTGAAGGGATTATCGAGAAATTTCTGTCCATTTTTACTGGTCAAGATTATGAAACTGTTTGAATGTCGGGAAACCGCGTTTGCGTTCTTCAAGCTAGCATTTAAGGACGATTCTGAAGAAACTGTTAAGTCTTGTTGTGTGCTGGCACATCTCTTAGCTGCAGAACAACTTCGTTTTCTAGCGCAAGATATTGTTTCGTGGGTTGTTGCTAGAATTGGTCCAGGAAGGAGCAAGAATTTGGCGGCATTTATGTGGGAAGGTCACCGTATGTACGAATCTGATTTTTCAGTGTTGAACACTCTAATGCGGGCGTTTATGAAGTCAGAAATGCATTTTGAGGCTTTAGAAATATTGAGTAAGATGCGGGAGGTGGGAGTGACGCCAAATCCATCGGCCATTTCGATTCTTTTTAGATTGCTGATTAGAGCTGGCGATTGTGGTGCTGTATGGAAGTTGTTTGGAGATGTGGTTCGAAAGGGACCTTGCCCTAATAATTTTATATTTAACTTATTGATTCTTGAGTTTTGTAGAAAAGGTTGGACTAGGATTGGAGAAGCTCTGTTGCACGTAATGGGCAAATTTAGATGTGAACCAGATGTTTATTCCTATAATATCGTGATACATGCGAACTGCTTAAAAGGGCAATCATCATATGCACTTCATTTGGTGAATCTAATGATCGCAAATGACTGTAAACCTAGCATTGCCACATTCTGTACCATCATTGATGCCTTCTGCAAGGAGGATATGGAAAGGAGGAGGATGGGGATCGATTATTAA

Protein sequence

MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKEDMERRRMGIDY

Homology

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BLAST of MELO3C006272 vs. NCBI nr
Match: KAA0049114.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 682.9 bits (1761), Expect = 1.4e-192
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60

Query: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120
           LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF
Sbjct: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120

Query: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180
           KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM
Sbjct: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180

Query: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240
           YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW
Sbjct: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240

Query: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300
           KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN
Sbjct: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300

Query: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 338

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BLAST of MELO3C006272 vs. NCBI nr
Match: XP_016899019.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like [Cucumis melo])

HSP 1 Score: 682.9 bits (1761), Expect = 1.4e-192
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60

Query: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120
           LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF
Sbjct: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120

Query: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180
           KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM
Sbjct: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180

Query: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240
           YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW
Sbjct: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240

Query: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300
           KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN
Sbjct: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300

Query: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 338

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BLAST of MELO3C006272 vs. NCBI nr
Match: TYK17450.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 666.4 bits (1718), Expect = 1.4e-187
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 10  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT 69
           NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT
Sbjct: 52  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT 111

Query: 70  NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE 129
           NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE
Sbjct: 112 NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE 171

Query: 130 ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN 189
           ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN
Sbjct: 172 ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN 231

Query: 190 TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 249
           TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK
Sbjct: 232 TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 291

Query: 250 GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA 309
           GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA
Sbjct: 292 GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA 351

Query: 310 LHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           LHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 352 LHLVNLMIANDCKPSIATFCTIIDAFCKE 380

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BLAST of MELO3C006272 vs. NCBI nr
Match: XP_031738963.1 (pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650288.1 hypothetical protein Csa_011189 [Cucumis sativus])

HSP 1 Score: 644.4 bits (1661), Expect = 5.5e-181
Identity = 321/340 (94.41%), Postives = 331/340 (97.35%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGT 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPK FNEY    SSDSSTRSFDYIAQFLPSNDGT
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGT 60

Query: 61  LKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFA 120
           LKLISVNSVTTNDRRRV+VGLSKA+KL QGYVLKGLSRNFCPFLLVKIMKLFECRETA+A
Sbjct: 61  LKLISVNSVTTNDRRRVTVGLSKAIKLYQGYVLKGLSRNFCPFLLVKIMKLFECRETAYA 120

Query: 121 FFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180
           FFKLAFKDDSEETV+SCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH
Sbjct: 121 FFKLAFKDDSEETVRSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180

Query: 181 RMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240
           R+YESD+SVL+TLMRAF+KSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA
Sbjct: 181 RVYESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240

Query: 241 VWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIH 300
           VWKLFGDVVRKGPCPNNF FNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVI+
Sbjct: 241 VWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIN 300

Query: 301 ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           ANCLKGQSSYALHL+NLMI N CKPSIATFCTIIDAFCKE
Sbjct: 301 ANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKE 340

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BLAST of MELO3C006272 vs. NCBI nr
Match: XP_038892548.1 (pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida])

HSP 1 Score: 590.1 bits (1520), Expect = 1.2e-164
Identity = 296/340 (87.06%), Postives = 315/340 (92.65%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGT 60
           M VNVRRLQNSFKVHWSSSLS SQTLI KF NEY    SSDS T +FDYIAQFLPSNDGT
Sbjct: 14  MIVNVRRLQNSFKVHWSSSLSPSQTLILKFLNEYCSSSSSDSGTHAFDYIAQFLPSNDGT 73

Query: 61  LKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFA 120
           LKLISVNSV TNDRRRV+VGLSKA+KL QGY LKGLSRNFCPFLLV+IMKLFECRETAFA
Sbjct: 74  LKLISVNSVNTNDRRRVTVGLSKAIKLYQGYALKGLSRNFCPFLLVEIMKLFECRETAFA 133

Query: 121 FFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180
           FFKLAFKDDSEETV+SCC++AHLLAAE+LRFLAQDI+SWVVARIGPGRSKNLAAFMW+GH
Sbjct: 134 FFKLAFKDDSEETVRSCCIVAHLLAAERLRFLAQDIISWVVARIGPGRSKNLAAFMWDGH 193

Query: 181 RMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240
             YESD SVL+TLMRAFMKSEMHFEALEILSKMREVGVTPN SAISILFRLL+RAGD GA
Sbjct: 194 CEYESDLSVLDTLMRAFMKSEMHFEALEILSKMREVGVTPNASAISILFRLLLRAGDYGA 253

Query: 241 VWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIH 300
           VWKLFGD+VRKGP PNN++FN++ILEFCRKGWTRIGE LLHVM KFRCEPDVYSYNIVI+
Sbjct: 254 VWKLFGDLVRKGPRPNNYMFNVMILEFCRKGWTRIGEGLLHVMRKFRCEPDVYSYNIVIN 313

Query: 301 ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           ANCLKG+SS ALHLVNLMIAN CKPSIAT  TIIDAFCKE
Sbjct: 314 ANCLKGRSSDALHLVNLMIANGCKPSIATLSTIIDAFCKE 353

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BLAST of MELO3C006272 vs. ExPASy Swiss-Prot
Match: P0C894 (Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana OX=3702 GN=At2g02150 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-18
Identity = 67/272 (24.63%), Postives = 116/272 (42.65%), Query Frame = 0


Query: 106 IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGP 165
           +++L E  + AF FFK +  ++  + +V+S C++AH+L   ++ + A  ++  +V     
Sbjct: 115 LVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL---S 174

Query: 166 GRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAIS 225
               ++   +W    +    F V + L    +   M  EA++  SKM+   V P   + +
Sbjct: 175 KADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCN 234

Query: 226 ILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKF 285
            L     + G    V + F D++  G  P  F +N++I   C++G       L   M KF
Sbjct: 235 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM-KF 294

Query: 286 R------------------------------------CEPDVYSYNIVIHANCLKGQSSY 341
           R                                    CEPDV +YN +I+  C  G+   
Sbjct: 295 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 354

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BLAST of MELO3C006272 vs. ExPASy Swiss-Prot
Match: Q9LVQ5 (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-16
Identity = 55/227 (24.23%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 116 AFAFFKLAFKDDSEET---VKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAA 175
           A  F K   K    ET   V+  C+  H+L   ++   A+ I+  +   +  G+S  +  
Sbjct: 53  ALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKEL--SLMSGKSSFVFG 112

Query: 176 FMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIR 235
            +   +R+  S+ SV + L+R +++  M  ++LEI   M   G  P+    + +   +++
Sbjct: 113 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 172

Query: 236 AGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYS 295
           +G+  +VW    +++++  CP+   FN+LI   C +G       L+  M K    P + +
Sbjct: 173 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 232

Query: 296 YNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKED 340
           YN V+H  C KG+   A+ L++ M +      + T+  +I   C+ +
Sbjct: 233 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN 277

[Close]

BLAST of MELO3C006272 vs. ExPASy Swiss-Prot
Match: Q3EDF8 (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX=3702 GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.8e-16
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 184 DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLF 243
           D    N L+    K     EA++ L+ M   G  PN    +I+ R +   G      KL 
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 244 GDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLK 303
            D++RKG  P+   FN+LI   CRKG       +L  M +  C+P+  SYN ++H  C +
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392

Query: 304 GQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
            +   A+  +  M++  C P I T+ T++ A CK+
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427

[Close]

BLAST of MELO3C006272 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 47/172 (27.33%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 167 SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISIL 226
           +K +  FM   H     D    NTL++ F K +   E +E+  +M + G+  N    +IL
Sbjct: 380 AKQMFEFMVSKHCF--PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 439

Query: 227 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRC 286
            + L +AGDC    ++F ++V  G  PN   +N L+   C+ G       +   + + + 
Sbjct: 440 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 499

Query: 287 EPDVYSYNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           EP +Y+YNI+I   C  G+      L   +     KP +  + T+I  FC++
Sbjct: 500 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549

[Close]

BLAST of MELO3C006272 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-15
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 182 ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWK 241
           E+D  + NT++    K +   +AL + ++M   G+ P+    S L   L   G      +
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 242 LFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANC 301
           L  D++ +   PN   F+ LI  F ++G     E L   M K   +PD+++Y+ +I+  C
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 374

Query: 302 LKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK 338
           +  +   A H+  LMI+ DC P++ T+ T+I  FCK
Sbjct: 375 MHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410

[Close]

BLAST of MELO3C006272 vs. ExPASy TrEMBL
Match: A0A5A7U1D1 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G003440 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 6.8e-193
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60

Query: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120
           LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF
Sbjct: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120

Query: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180
           KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM
Sbjct: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180

Query: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240
           YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW
Sbjct: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240

Query: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300
           KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN
Sbjct: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300

Query: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 338

[Close]

BLAST of MELO3C006272 vs. ExPASy TrEMBL
Match: A0A1S4DSR0 (pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103483442 PE=4 SV=1)

HSP 1 Score: 682.9 bits (1761), Expect = 6.8e-193
Identity = 338/338 (100.00%), Postives = 338/338 (100.00%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLK 60

Query: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120
           LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF
Sbjct: 61  LISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFF 120

Query: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180
           KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM
Sbjct: 121 KLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRM 180

Query: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240
           YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW
Sbjct: 181 YESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVW 240

Query: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300
           KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN
Sbjct: 241 KLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHAN 300

Query: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 301 CLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 338

[Close]

BLAST of MELO3C006272 vs. ExPASy TrEMBL
Match: A0A5D3D1G3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003140 PE=4 SV=1)

HSP 1 Score: 666.4 bits (1718), Expect = 6.6e-188
Identity = 329/329 (100.00%), Postives = 329/329 (100.00%), Query Frame = 0


Query: 10  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT 69
           NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT
Sbjct: 52  NSFKVHWSSSLSSSQTLIPKFFNEYYYSSDSSTRSFDYIAQFLPSNDGTLKLISVNSVTT 111

Query: 70  NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE 129
           NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE
Sbjct: 112 NDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFAFFKLAFKDDSE 171

Query: 130 ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN 189
           ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN
Sbjct: 172 ETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRMYESDFSVLN 231

Query: 190 TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 249
           TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK
Sbjct: 232 TLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRK 291

Query: 250 GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA 309
           GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA
Sbjct: 292 GPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLKGQSSYA 351

Query: 310 LHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           LHLVNLMIANDCKPSIATFCTIIDAFCKE
Sbjct: 352 LHLVNLMIANDCKPSIATFCTIIDAFCKE 380

[Close]

BLAST of MELO3C006272 vs. ExPASy TrEMBL
Match: A0A0A0L7U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1)

HSP 1 Score: 644.4 bits (1661), Expect = 2.7e-181
Identity = 321/340 (94.41%), Postives = 331/340 (97.35%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGT 60
           MFVNVRRLQNSFKVHWSSSLSSSQTLIPK FNEY    SSDSSTRSFDYIAQFLPSNDGT
Sbjct: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKLFNEYCSSSSSDSSTRSFDYIAQFLPSNDGT 60

Query: 61  LKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFA 120
           LKLISVNSVTTNDRRRV+VGLSKA+KL QGYVLKGLSRNFCPFLLVKIMKLFECRETA+A
Sbjct: 61  LKLISVNSVTTNDRRRVTVGLSKAIKLYQGYVLKGLSRNFCPFLLVKIMKLFECRETAYA 120

Query: 121 FFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180
           FFKLAFKDDSEETV+SCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH
Sbjct: 121 FFKLAFKDDSEETVRSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180

Query: 181 RMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240
           R+YESD+SVL+TLMRAF+KSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA
Sbjct: 181 RVYESDYSVLDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240

Query: 241 VWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIH 300
           VWKLFGDVVRKGPCPNNF FNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVI+
Sbjct: 241 VWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIN 300

Query: 301 ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           ANCLKGQSSYALHL+NLMI N CKPSIATFCTIIDAFCKE
Sbjct: 301 ANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKE 340

[Close]

BLAST of MELO3C006272 vs. ExPASy TrEMBL
Match: A0A6J1IVM8 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima OX=3661 GN=LOC111479659 PE=4 SV=1)

HSP 1 Score: 558.5 bits (1438), Expect = 1.9e-155
Identity = 280/340 (82.35%), Postives = 302/340 (88.82%), Query Frame = 0


Query: 1   MFVNVRRLQNSFKVHWSSSLSSSQTLIPKFFNEY--YYSSDSSTRSFDYIAQFLPSNDGT 60
           MFV VR LQNSFKVHWSSSLS  QTL PKF N+Y    SSDSST +FDYIAQFLPSNDGT
Sbjct: 1   MFVYVRCLQNSFKVHWSSSLSPFQTLTPKFLNKYSSSSSSDSSTCAFDYIAQFLPSNDGT 60

Query: 61  LKLISVNSVTTNDRRRVSVGLSKAVKLPQGYVLKGLSRNFCPFLLVKIMKLFECRETAFA 120
           LKL+SV+SVTTNDRRR++VGLSKA+KL QGY LK LSRNFCPF LVKIMKLFECRETAFA
Sbjct: 61  LKLVSVSSVTTNDRRRITVGLSKAIKLYQGYALKELSRNFCPFFLVKIMKLFECRETAFA 120

Query: 121 FFKLAFKDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGH 180
           FFKLAF DD E+TV+SCCV+AHLLAAE+   LAQDIVSW+ ARIGP RSKNLAAFMWEGH
Sbjct: 121 FFKLAFNDDCEDTVRSCCVVAHLLAAERFFLLAQDIVSWIFARIGPRRSKNLAAFMWEGH 180

Query: 181 RMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGA 240
             YESD SVLNTLMR FMKSEMH+EALEILSKMREVGV PN SAISILFRLL+RAGD GA
Sbjct: 181 CDYESDLSVLNTLMRGFMKSEMHYEALEILSKMREVGVMPNASAISILFRLLLRAGDYGA 240

Query: 241 VWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIH 300
           VWKLFGDVVRKGPCPNN++FN++ILEFCRKGW+ IGE LLHVM KFRCEPDVYSYNIVI+
Sbjct: 241 VWKLFGDVVRKGPCPNNYMFNVMILEFCRKGWSVIGEGLLHVMRKFRCEPDVYSYNIVIN 300

Query: 301 ANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           A CL+GQSS ALH VNLMIAN CKPSIATF  +IDAFCKE
Sbjct: 301 ATCLRGQSSDALHWVNLMIANGCKPSIATFSIVIDAFCKE 340

[Close]

BLAST of MELO3C006272 vs. TAIR 10
Match: AT2G02150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-19
Identity = 67/272 (24.63%), Postives = 116/272 (42.65%), Query Frame = 0


Query: 106 IMKLFECRETAFAFFKLAF-KDDSEETVKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGP 165
           +++L E  + AF FFK +  ++  + +V+S C++AH+L   ++ + A  ++  +V     
Sbjct: 115 LVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVL---S 174

Query: 166 GRSKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAIS 225
               ++   +W    +    F V + L    +   M  EA++  SKM+   V P   + +
Sbjct: 175 KADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCN 234

Query: 226 ILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKF 285
            L     + G    V + F D++  G  P  F +N++I   C++G       L   M KF
Sbjct: 235 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEM-KF 294

Query: 286 R------------------------------------CEPDVYSYNIVIHANCLKGQSSY 341
           R                                    CEPDV +YN +I+  C  G+   
Sbjct: 295 RGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPI 354

[Close]

BLAST of MELO3C006272 vs. TAIR 10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 3.2e-17
Identity = 55/227 (24.23%), Postives = 108/227 (47.58%), Query Frame = 0


Query: 116 AFAFFKLAFKDDSEET---VKSCCVLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAA 175
           A  F K   K    ET   V+  C+  H+L   ++   A+ I+  +   +  G+S  +  
Sbjct: 93  ALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKEL--SLMSGKSSFVFG 152

Query: 176 FMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIR 235
            +   +R+  S+ SV + L+R +++  M  ++LEI   M   G  P+    + +   +++
Sbjct: 153 ALMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVK 212

Query: 236 AGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYS 295
           +G+  +VW    +++++  CP+   FN+LI   C +G       L+  M K    P + +
Sbjct: 213 SGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVT 272

Query: 296 YNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKED 340
           YN V+H  C KG+   A+ L++ M +      + T+  +I   C+ +
Sbjct: 273 YNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSN 317

[Close]

BLAST of MELO3C006272 vs. TAIR 10
Match: AT1G09900.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-17
Identity = 48/155 (30.97%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 184 DFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLF 243
           D    N L+    K     EA++ L+ M   G  PN    +I+ R +   G      KL 
Sbjct: 273 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLL 332

Query: 244 GDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANCLK 303
            D++RKG  P+   FN+LI   CRKG       +L  M +  C+P+  SYN ++H  C +
Sbjct: 333 ADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKE 392

Query: 304 GQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
            +   A+  +  M++  C P I T+ T++ A CK+
Sbjct: 393 KKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKD 427

[Close]

BLAST of MELO3C006272 vs. TAIR 10
Match: AT1G62670.1 (rna processing factor 2 )

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-17
Identity = 47/172 (27.33%), Postives = 81/172 (47.09%), Query Frame = 0


Query: 167 SKNLAAFMWEGHRMYESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISIL 226
           +K +  FM   H     D    NTL++ F K +   E +E+  +M + G+  N    +IL
Sbjct: 380 AKQMFEFMVSKHCF--PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNIL 439

Query: 227 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRC 286
            + L +AGDC    ++F ++V  G  PN   +N L+   C+ G       +   + + + 
Sbjct: 440 IQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKM 499

Query: 287 EPDVYSYNIVIHANCLKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCKE 339
           EP +Y+YNI+I   C  G+      L   +     KP +  + T+I  FC++
Sbjct: 500 EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRK 549

[Close]

BLAST of MELO3C006272 vs. TAIR 10
Match: AT1G62910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-17
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 0


Query: 182 ESDFSVLNTLMRAFMKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWK 241
           E+D  + NT++    K +   +AL + ++M   G+ P+    S L   L   G      +
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314

Query: 242 LFGDVVRKGPCPNNFIFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVIHANC 301
           L  D++ +   PN   F+ LI  F ++G     E L   M K   +PD+++Y+ +I+  C
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFC 374

Query: 302 LKGQSSYALHLVNLMIANDCKPSIATFCTIIDAFCK 338
           +  +   A H+  LMI+ DC P++ T+ T+I  FCK
Sbjct: 375 MHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410

The following BLAST results are available for this feature:

BLAST of MELO3C006272 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049114.1	1.4e-192	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016899019.1	1.4e-192	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g63130, mitochondrial-...	[more]
TYK17450.1	1.4e-187	100.00	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_031738963.1	5.5e-181	94.41	pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus] >KAE8650...	[more]
XP_038892548.1	1.2e-164	87.06	pentatricopeptide repeat-containing protein At1g63330-like [Benincasa hispida]	[more]

BLAST of MELO3C006272 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C894	8.1e-18	24.63	Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis th...	[more]
Q9LVQ5	4.5e-16	24.23	Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX...	[more]
Q3EDF8	5.8e-16	30.97	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana OX...	[more]
Q9SXD1	1.0e-15	27.33	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
Q9LQ16	1.0e-15	29.49	Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C006272 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1D1	6.8e-193	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DSR0	6.8e-193	100.00	pentatricopeptide repeat-containing protein At1g63130, mitochondrial-like OS=Cuc...	[more]
A0A5D3D1G3	6.6e-188	100.00	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0L7U2	2.7e-181	94.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G128950 PE=4 SV=1	[more]
A0A6J1IVM8	1.9e-155	82.35	pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita maxima O...	[more]

BLAST of MELO3C006272 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02150.1	5.8e-19	24.63	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G55840.1	3.2e-17	24.23	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	4.1e-17	30.97	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G62670.1	7.1e-17	27.33	rna processing factor 2	[more]
AT1G62910.1	7.1e-17	29.49	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 124..272 e-value: 3.9E-15 score: 57.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 274..345 e-value: 1.1E-13 score: 53.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 288..337 e-value: 5.6E-11 score: 42.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 188..219 e-value: 1.9E-5 score: 22.5 coord: 291..324 e-value: 1.3E-4 score: 19.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 188..216 e-value: 2.2E-4 score: 21.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 184..218 score: 10.413293
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 289..323 score: 9.821383
None	No IPR available	PANTHER	PTHR47941:SF9	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 51..339
None	No IPR available	PANTHER	PTHR47941	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL	coord: 51..339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006272.1	MELO3C006272.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding