MELO3C005323 (gene) Melon (DHL92) v4

Overview
NameMELO3C005323
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptionextensin-like
Locationchr09: 19197342 .. 19197784 (+)
RNA-Seq ExpressionMELO3C005323
SyntenyMELO3C005323
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTTCTTCTCTCTAAAAAAATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTTCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGCCACCGTCCGCCGCCTCGACGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAACCCCCATCTCCCCCTCCACCGCTGGTGTACCCCTCACCCCCCCCGCCGTCTCCTCCGCCGCCCGATGTCGTCCCCTACTACTCGCCCCCACCCCCCAAGAAGAAGGAGCCCAAAAACCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAACTGGACCTCCCGGCGACCTCTATCCCATCGACCAGAATTACAACGCCGCCGGGCGAAGATCCGCCGCCGCCGCCGCGGTTGGGGTTGTTCTGGCCGGGCTTCTGTTGGTCGGTTAG

mRNA sequence

CTCTTTCTTCTCTCTAAAAAAATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTTCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGCCACCGTCCGCCGCCTCGACGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAACCCCCATCTCCCCCTCCACCGCTGGTGTACCCCTCACCCCCCCCGCCGTCTCCTCCGCCGCCCGATGTCGTCCCCTACTACTCGCCCCCACCCCCCAAGAAGAAGGAGCCCAAAAACCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAACTGGACCTCCCGGCGACCTCTATCCCATCGACCAGAATTACAACGCCGCCGGGCGAAGATCCGCCGCCGCCGCCGCGGTTGGGGTTGTTCTGGCCGGGCTTCTGTTGGTCGGTTAG

Coding sequence (CDS)

ATGCTTCCTCTCAAATTTCTCCTTTTTCTCAATTTCCTTCTCCTCATTTCCCCTTCCTCGGCCCTCACCTCCGCCACCGTCCGCCGCCTCGACGACACCACCACCCCCACCGACCCCAACGTCAAGTGCGCCCCATGCGAACAAAACCCCCATCTCCCCCTCCACCGCTGGTGTACCCCTCACCCCCCCCGCCGTCTCCTCCGCCGCCCGATGTCGTCCCCTACTACTCGCCCCCACCCCCCAAGAAGAAGGAGCCCAAAAACCCCAACTGCCCTCCGCCGCCGTCTCCGTCGTTCATGTACATAA

Protein sequence

MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTPHPPRRLLRRPMSSPTTRPHPPRRRSPKTPTALRRRLRRSCT
Homology
BLAST of MELO3C005323 vs. NCBI nr
Match: XP_008467156.1 (PREDICTED: extensin-like [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 3.5e-19
Identity = 62/89 (69.66%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNP  P      P
Sbjct: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPPSPPPPLVYP 60

Query: 61 HPPRRLLRRPMSSPTTRPHPPRRRSPKTP 90
           PP      P   P   P PP+++ PK P
Sbjct: 61 SPPPPSPPPPDVVPYYSPPPPKKKEPKNP 89

BLAST of MELO3C005323 vs. NCBI nr
Match: XP_004150475.1 (leucine-rich repeat extensin-like protein 6 [Cucumis sativus] >KGN51515.1 hypothetical protein Csa_009313 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 61/89 (68.54%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLPLKFLLFLNFLLLISPSSALTS TVRRLDDTTTPTDPNVKCAPCEQNP  P      P
Sbjct: 1  MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQNPPSPPPPVVYP 60

Query: 61 HPPRRLLRRPMSSPTTRPHPPRRRSPKTP 90
           PP      P   P   P PP+++ PK+P
Sbjct: 61 SPPPPSPPPPDVVPYYSPPPPKKKEPKSP 89

BLAST of MELO3C005323 vs. NCBI nr
Match: XP_022989990.1 (leucine-rich repeat extensin-like protein 3 [Cucurbita maxima])

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-05
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDT---TTPTDPNVKCAPCEQNPHLPLHRW 60
          MLP   LLFL  LLLISPSS  +SA VRRLDDT    TP DP VKC+PCEQNP  P    
Sbjct: 1  MLPFNSLLFLTLLLLISPSS--SSAAVRRLDDTPVSATPADPTVKCSPCEQNPPSPPPPP 60

Query: 61 CTPHPPRRLLRRPMSSPTTRPHPPRR 84
            P PP      P       P PP++
Sbjct: 61 VYPSPPPPSPPPPDVVVYYSPPPPKK 84

BLAST of MELO3C005323 vs. NCBI nr
Match: XP_023520933.1 (extensin [Cucurbita pepo subsp. pepo] >XP_023521360.1 extensin-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-05
Identity = 48/94 (51.06%), Postives = 52/94 (55.32%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLP   LLFL  LLLISPSS  +SA VRRLDD  TPTDP VKC+PCEQNP  P      P
Sbjct: 1  MLPFNSLLFLTLLLLISPSS--SSAAVRRLDD--TPTDPTVKCSPCEQNPPSP------P 60

Query: 61 HPPRRLLRRPMSSPTT-------RPHPPRRRSPK 88
           PP      P  SP          P PP ++  K
Sbjct: 61 PPPPVYPSPPPPSPPPPDVVIYYSPPPPPKKDHK 84

BLAST of MELO3C005323 vs. NCBI nr
Match: XP_022152315.1 (acrosin [Momordica charantia])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPS-SALTSATVRRLDDT----TTPTDPNVKCAPCEQNPHLPLH 60
          MLPLK LLFLN LLLISPS +A  SA  R LD+     +T  DP VKCAPC+QNP  P  
Sbjct: 1  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPP 60

Query: 61 RWCTPHPPRRLLRRPMSSPTTRPHPPRR 84
              P PP      P   P   P PP++
Sbjct: 61 PPIYPSPPPPSPPPPDVLPYYSPPPPKK 88

BLAST of MELO3C005323 vs. ExPASy TrEMBL
Match: A0A1S3CT22 (extensin-like OS=Cucumis melo OX=3656 GN=LOC103504576 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 62/89 (69.66%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNP  P      P
Sbjct: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPPSPPPPLVYP 60

Query: 61 HPPRRLLRRPMSSPTTRPHPPRRRSPKTP 90
           PP      P   P   P PP+++ PK P
Sbjct: 61 SPPPPSPPPPDVVPYYSPPPPKKKEPKNP 89

BLAST of MELO3C005323 vs. ExPASy TrEMBL
Match: A0A0A0KPJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571580 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.9e-19
Identity = 61/89 (68.54%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLPLKFLLFLNFLLLISPSSALTS TVRRLDDTTTPTDPNVKCAPCEQNP  P      P
Sbjct: 1  MLPLKFLLFLNFLLLISPSSALTSVTVRRLDDTTTPTDPNVKCAPCEQNPPSPPPPVVYP 60

Query: 61 HPPRRLLRRPMSSPTTRPHPPRRRSPKTP 90
           PP      P   P   P PP+++ PK+P
Sbjct: 61 SPPPPSPPPPDVVPYYSPPPPKKKEPKSP 89

BLAST of MELO3C005323 vs. ExPASy TrEMBL
Match: A0A6J1JNW0 (leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111487018 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 8.2e-06
Identity = 45/86 (52.33%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDT---TTPTDPNVKCAPCEQNPHLPLHRW 60
          MLP   LLFL  LLLISPSS  +SA VRRLDDT    TP DP VKC+PCEQNP  P    
Sbjct: 1  MLPFNSLLFLTLLLLISPSS--SSAAVRRLDDTPVSATPADPTVKCSPCEQNPPSPPPPP 60

Query: 61 CTPHPPRRLLRRPMSSPTTRPHPPRR 84
            P PP      P       P PP++
Sbjct: 61 VYPSPPPPSPPPPDVVVYYSPPPPKK 84

BLAST of MELO3C005323 vs. ExPASy TrEMBL
Match: A0A6J1DDL2 (acrosin OS=Momordica charantia OX=3673 GN=LOC111020062 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.9e-05
Identity = 44/88 (50.00%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPS-SALTSATVRRLDDT----TTPTDPNVKCAPCEQNPHLPLH 60
          MLPLK LLFLN LLLISPS +A  SA  R LD+     +T  DP VKCAPC+QNP  P  
Sbjct: 1  MLPLKSLLFLNLLLLISPSATAAASAAARFLDEAPAVPSTTGDPTVKCAPCDQNPPSPPP 60

Query: 61 RWCTPHPPRRLLRRPMSSPTTRPHPPRR 84
              P PP      P   P   P PP++
Sbjct: 61 PPIYPSPPPPSPPPPDVLPYYSPPPPKK 88

BLAST of MELO3C005323 vs. ExPASy TrEMBL
Match: A0A6J1GMY1 (extensin OS=Cucurbita moschata OX=3662 GN=LOC111455867 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.0e-05
Identity = 45/87 (51.72%), Postives = 49/87 (56.32%), Query Frame = 0

Query: 1  MLPLKFLLFLNFLLLISPSSALTSATVRRLDDTTTPTDPNVKCAPCEQNPHLPLHRWCTP 60
          MLP   LLFL  LLLISPSS  +SA VRRLDD  TP DP VKC+PCEQNP  P      P
Sbjct: 1  MLPFNSLLFLALLLLISPSS--SSAAVRRLDD--TPADPTVKCSPCEQNPPSPPPPPVYP 60

Query: 61 HPPRRLLRRPMSSPTTRPHPPRRRSPK 88
           PP      P       P PP ++  K
Sbjct: 61 SPPPPSPPPPDVVIYYSPPPPPKKDHK 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008467156.13.5e-1969.66PREDICTED: extensin-like [Cucumis melo][more]
XP_004150475.11.0e-1868.54leucine-rich repeat extensin-like protein 6 [Cucumis sativus] >KGN51515.1 hypoth... [more]
XP_022989990.11.7e-0552.33leucine-rich repeat extensin-like protein 3 [Cucurbita maxima][more]
XP_023520933.13.8e-0551.06extensin [Cucurbita pepo subsp. pepo] >XP_023521360.1 extensin-like [Cucurbita p... [more]
XP_022152315.11.4e-0450.00acrosin [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1S3CT221.7e-1969.66extensin-like OS=Cucumis melo OX=3656 GN=LOC103504576 PE=4 SV=1[more]
A0A0A0KPJ14.9e-1968.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571580 PE=4 SV=1[more]
A0A6J1JNW08.2e-0652.33leucine-rich repeat extensin-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1DDL26.9e-0550.00acrosin OS=Momordica charantia OX=3673 GN=LOC111020062 PE=4 SV=1[more]
A0A6J1GMY19.0e-0551.72extensin OS=Cucurbita moschata OX=3662 GN=LOC111455867 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 80..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005323.1MELO3C005323.1mRNA