MELO3C004943 (gene) Melon (DHL92) v4

Overview
NameMELO3C004943
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPolyadenylation and cleavage factor-like protein 4 isoform X2
Locationchr12: 5857877 .. 5859068 (-)
RNA-Seq ExpressionMELO3C004943
SyntenyMELO3C004943
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAAAAAGAGCCTTGAGACGGATGAAGAAGATGGTAGATCAGAAGCGATGCTCCCTCGAGTTCGAGCGGGGGGATTAGGTTCTCGTCAAGTGGCGCAACAGTGGCATATTACTATTTATTGGCAAAAGAAAGAAGATTGTGAAGTCGCAGAAATCCTTCTTGATAAAGCAAGGAAGAGTGGAAGACCCATGGGAAGTATACATGAATTCCTAGTGAAGTGGAATAACCTTCCCATGGAAGAAACAAGTTGAGAATGTGTCGGAGACTGAAGAATTCCAGCTTTGTCAGTTGACAGGATGTCAACCGCTTAGGCAGGGTAGAATGTCACGGACATGCTTATCCAAGGTGTTGTTTGCCTATGGCCGCATGCCCAAATACCCCAAAATTACTTTATCTTTATGTCATGTACGTAGTTTAGTCTATTGCCTTCATTTTCATGTCACCGGGCTAGAGTATGACGTTTTGGCATTTTTATATGCAAGTCTGCCAAGACTAAAAATGTTCAAAATGTACTATAAAGGAGACATAGTAGTTGAATCCTCGACCAAGCCTCGTTGAACTCTTTGCAAGTTTAGCTTTTCTTTATAATTGACAGTCTTCGATGCTTGCATTTATGATGTTTTCGATGATTTCATTTCCTTTCTCTCTCACGTTTTATAAAACAATTTTCTCAAGAACGTGAAGGGAGGCTACATGATATCGCGAGTTCGTCCATGACTTTCGAATTTTATACGACTAACTTGTTGACGGAATAGAACAAGTACCGTACAATCGTGTTTGAAAGACTACAATTATGACACCAAACGCCCTGTTGAAGAGTATTTATTCCTATATATATATAATATTCTCTCCAAATTTTGACAAACCGGTTTTAGAAGAAAAGAGTTTGATTGAGTGACCCAAACCGGATGACTCTAATTTAATCGAAAATCGAAATATACTCAATTTAGGGCTGTTCAAATAAGGGGTGCGGCTTTCGATCCTCTTCGGGGTTCTCAAAACGTGAATCCGAGCCAATCTGTGAAGTGCGCGAGCGAGCGAACGTATCGGGGCCCTTTGCAATAAGAGGCGGCTGCTGGTTTAGCGTCCGTCGACGGTGCCTGCAACGGAGCAAGCGCTGAGCAGCGGCGGTGTGGGCACGAGTCTGGGAGTGCTCTGCGAATGATTGACTGGTAGTTCTGCGTGAAG

mRNA sequence

ATGTCTAAAAAGAGCCTTGAGACGGATGAAGAAGATGGTAGATCAGAAGCGATGCTCCCTCGAGTTCGAGCGGGGGGATTAGGTTCTCGTCAAGTGGCGCAACAGTGGCATATTACTATTTATTGGCAAAAGAAAGAAGATTGTGAAGTCGCAGAAATCCTTCTTGATAAAGCAAGGAAGAGTGGAAGACCCATGGGAAAGGCGGCTGCTGGTTTAGCGTCCGTCGACGGTGCCTGCAACGGAGCAAGCGCTGAGCAGCGGCGGTGTGGGCACGAGTCTGGGAGTGCTCTGCGAATGATTGACTGGTAGTTCTGCGTGAAG

Coding sequence (CDS)

ATGTCTAAAAAGAGCCTTGAGACGGATGAAGAAGATGGTAGATCAGAAGCGATGCTCCCTCGAGTTCGAGCGGGGGGATTAGGTTCTCGTCAAGTGGCGCAACAGTGGCATATTACTATTTATTGGCAAAAGAAAGAAGATTGTGAAGTCGCAGAAATCCTTCTTGATAAAGCAAGGAAGAGTGGAAGACCCATGGGAAAGGCGGCTGCTGGTTTAGCGTCCGTCGACGGTGCCTGCAACGGAGCAAGCGCTGAGCAGCGGCGGTGTGGGCACGAGTCTGGGAGTGCTCTGCGAATGATTGACTGGTAG

Protein sequence

MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARKSGRPMGKAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW
Homology
[Close]
BLAST of MELO3C004943 vs. NCBI nr
Match: KAA0051796.1 (polyadenylation and cleavage factor-like protein 4 isoform X2 [Cucumis melo var. makuwa] >TYK21445.1 polyadenylation and cleavage factor-like protein 4 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 102/118 (86.44%), Postives = 102/118 (86.44%), Query Frame = 0 

Query: 1   MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK 60
           MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK
Sbjct: 1   MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK 60

Query: 61  SGRPMG----------------KAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW 103
           SGRPMG                KAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW
Sbjct: 61  SGRPMGRCQPLRQGRMSRTCLSKAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW 118

[Close]
BLAST of MELO3C004943 vs. ExPASy TrEMBL
Match: A0A5A7UC46 (Polyadenylation and cleavage factor-like protein 4 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001150 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 7.4e-47
Identity = 102/118 (86.44%), Postives = 102/118 (86.44%), Query Frame = 0 

Query: 1   MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK 60
           MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK
Sbjct: 1   MSKKSLETDEEDGRSEAMLPRVRAGGLGSRQVAQQWHITIYWQKKEDCEVAEILLDKARK 60

Query: 61  SGRPMG----------------KAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW 103
           SGRPMG                KAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW
Sbjct: 61  SGRPMGRCQPLRQGRMSRTCLSKAAAGLASVDGACNGASAEQRRCGHESGSALRMIDW 118

The following BLAST results are available for this feature:
BLAST of MELO3C004943 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C004943 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051796.11.5e-4686.44polyadenylation and cleavage factor-like protein 4 isoform X2 [Cucumis melo var.... [more]
BLAST of MELO3C004943 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UC467.4e-4786.44Polyadenylation and cleavage factor-like protein 4 isoform X2 OS=Cucumis melo va... [more]
BLAST of MELO3C004943 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004943.1MELO3C004943.1mRNA