MELO3C004808 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004808
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ribosomal protein s12
Location	chr05: 22009822 .. 22010123 (-)
RNA-Seq Expression	MELO3C004808
Synteny	MELO3C004808

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

mRNA sequence

gcataacttgtatccatgcgcttcatattcgcctggagttcgctcccagaaatatagccatccccaccccctcacgtcaatcccacgagcctcttatccattctcattcgatcacgggggagcaagtcaaaatagaaaaactcacattgggtttagggataatcaggctcgaactgatgacttccgccacgtcaaggcgacactctaccgctgagttatatcccttcccttgcccccatcgagaaatagaactgactaatcctaaggcaaagggtcgagaaactcaacgccactattcttga

Coding sequence (CDS)

ATAACTTGTATCCATGCGCTTCATATTCGCCTGGAGTTCGCTCCCAGAAATATAGCCATCCCCACCCCCTCACGTCAATCCCACGAGCCTCTTATCCATTCTCATTCGATCACGGGGGAGCAAGTCAAAATAGAAAAACTCACATTGGGTTTAGGGATAATCAGGCTCGAACTGATGACTTCCGCCACGTCAAGGCGACACTCTACCGCTGAGTTATATCCCTTCCCTTGCCCCCATCGAGAAATAGAACTGACTAATCCTAAGGCAAAGGGTCGAGAAACTCAACGCCACTATTCTTGA

Protein sequence

ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITGEQVKIEKLTLGLGIIRLELMTSATSRRHSTAELYPFPCPHREIELTNPKAKGRETQRHYS

Homology

[Close]

BLAST of MELO3C004808 vs. NCBI nr
Match: KAF4359988.1 (hypothetical protein F8388_004495 [Cannabis sativa])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSIT GEQVKIEKLTLGLGIIRLELM
Sbjct: 29 ITCIHALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 88

Query: 61 TSATSR 66
          TS TSR
Sbjct: 89 TSTTSR 94

[Close]

BLAST of MELO3C004808 vs. NCBI nr
Match: ERM97518.1 (hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELM
Sbjct: 13 ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 72

Query: 61 TSATS 65
          TS TS
Sbjct: 73 TSTTS 77

[Close]

BLAST of MELO3C004808 vs. NCBI nr
Match: KAG9438526.1 (hypothetical protein H6P81_021526 [Aristolochia fimbriata])

HSP 1 Score: 117.1 bits (292), Expect = 8.7e-23
Identity = 64/79 (81.01%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELM 60
           ITCIHALHI LEFAP NIAIPT SRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELM
Sbjct: 177 ITCIHALHISLEFAPSNIAIPTLSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 236

Query: 61  TSATSRRHSTAELYPFPCP 79
           TS TSR  S    +  P P
Sbjct: 237 TSTTSRLTSLLLSWYNPIP 255

[Close]

BLAST of MELO3C004808 vs. NCBI nr
Match: TYJ97094.1 (hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.4e-20
Identity = 56/64 (87.50%), Postives = 59/64 (92.19%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSI-TGEQVKIEKLTLGLGIIRLELM 60
           ITCIHA H+RL+FAPR+IAIPTPSRQSHEPLIHSHSI T EQVKIEKLTLGL IIRLELM
Sbjct: 115 ITCIHAFHVRLDFAPRDIAIPTPSRQSHEPLIHSHSIMTEEQVKIEKLTLGLEIIRLELM 174

Query: 61  TSAT 64
            SAT
Sbjct: 175 NSAT 178

[Close]

BLAST of MELO3C004808 vs. NCBI nr
Match: KAF4360038.1 (hypothetical protein G4B88_025799, partial [Cannabis sativa])

HSP 1 Score: 100.5 bits (249), Expect = 8.4e-18
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 13  FAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELMTSATSRR 67
           FAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELMTS TSR+
Sbjct: 50  FAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELMTSTTSRQ 104

[Close]

BLAST of MELO3C004808 vs. ExPASy TrEMBL
Match: A0A6N2KRR2 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLEL
Sbjct: 242 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 301

Query: 61  MTSATSRRHSTA 71
           MTS TSR+  T+
Sbjct: 302 MTSTTSRQRFTS 313

[Close]

BLAST of MELO3C004808 vs. ExPASy TrEMBL
Match: A0A6N2K9N9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLEL
Sbjct: 251 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 310

Query: 61  MTSATSRRHSTA 71
           MTS TSR+  T+
Sbjct: 311 MTSTTSRQRFTS 322

[Close]

BLAST of MELO3C004808 vs. ExPASy TrEMBL
Match: A0A6N2LAQ4 (Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS200687 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 63/72 (87.50%), Postives = 66/72 (91.67%), Query Frame = 0


Query: 1   ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT--GEQVKIEKLTLGLGIIRLEL 60
           + CIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT  GEQVKIEKLTLGLGIIRLEL
Sbjct: 147 LACIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAEGEQVKIEKLTLGLGIIRLEL 206

Query: 61  MTSATSRRHSTA 71
           MTS TSR+  T+
Sbjct: 207 MTSTTSRQRFTS 218

[Close]

BLAST of MELO3C004808 vs. ExPASy TrEMBL
Match: A0A7J6ENJ8 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.9e-25
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSH+PLIHSHSIT GEQVKIEKLTLGLGIIRLELM
Sbjct: 29 ITCIHALHIRLEFAPRNIAIPTPSRQSHKPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 88

Query: 61 TSATSR 66
          TS TSR
Sbjct: 89 TSTTSR 94

[Close]

BLAST of MELO3C004808 vs. ExPASy TrEMBL
Match: U5CXB4 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s05231p00006790 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.7e-25
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 1  ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT-GEQVKIEKLTLGLGIIRLELM 60
          ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSIT GEQVKIEKLTLGLGIIRLELM
Sbjct: 13 ITCIHALHIRLEFAPRNIAIPTPSRQSHEPLIHSHSITAGEQVKIEKLTLGLGIIRLELM 72

Query: 61 TSATS 65
          TS TS
Sbjct: 73 TSTTS 77

The following BLAST results are available for this feature:

BLAST of MELO3C004808 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4359988.1	1.2e-24	95.45	hypothetical protein F8388_004495 [Cannabis sativa]	[more]
ERM97518.1	1.6e-24	96.92	hypothetical protein AMTR_s05231p00006790, partial [Amborella trichopoda]	[more]
KAG9438526.1	8.7e-23	81.01	hypothetical protein H6P81_021526 [Aristolochia fimbriata]	[more]
TYJ97094.1	1.4e-20	87.50	hypothetical protein E5676_scaffold23G00250 [Cucumis melo var. makuwa]	[more]
KAF4360038.1	8.4e-18	94.55	hypothetical protein G4B88_025799, partial [Cannabis sativa]	[more]

BLAST of MELO3C004808 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C004808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2KRR2	4.5e-25	87.50	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS86348 PE=3 SV=1	[more]
A0A6N2K9N9	4.5e-25	87.50	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS53288 PE=3 SV=1	[more]
A0A6N2LAQ4	4.5e-25	87.50	Uncharacterized protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS2006...	[more]
A0A7J6ENJ8	5.9e-25	95.45	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_004495 PE=4 SV=1	[more]
U5CXB4	7.7e-25	96.92	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s052...	[more]

BLAST of MELO3C004808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004808.1	MELO3C004808.1	mRNA