MELO3C004695 (gene) Melon (DHL92) v4

Overview


Name	MELO3C004695
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	pre-mRNA-splicing factor CWC22 homolog isoform X2
Location	chr12: 12031557 .. 12034062 (+)
RNA-Seq Expression	MELO3C004695
Synteny	MELO3C004695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGCTTTCGTCAAATTGTCTGTTCGTCCATTCGTCCATTCGTCCATTCGTCCATCGCTTCATTTCCTCCACAGCCACCGCGCACGGCTGAGGACAGTCACGTCAAACCATCCATTCATTTTCACCACAGTCACCGTCCATTCATCCATTCGTTTCCTCCACGAAGCTCTTGTATCCCTGGGTTTTGTGAAATTTCAAATTCTTGTGCTTGCTTATACTGGAATGGGATGGGTATAAGGAACTACGGAAATGTTGCTACTCTCCTTCACTAACATATGTGTATGCTTGATGATGTGACGTCCTTTCTCTTGTTAATGCACTTTGTGCAATCTACTTACGTCTTTTTCTTCCTCTTGTTAAATATTTTGATGCTTTAATATTTATCTAAATTGAAATGCTTTAATAATTCCTCTGTGATTTAGTTGTTATTTGCTTTCATTCTTGTTTCCATATGCACTCCCATGTAGAGTTTGTTCTTTTGAGCGCTAGTTTCTTCTGTTTCATCAATTAAAAGTTTTGTTTCTTGTTCAAGCTATATCTTTATCTTCTTTATGAATCTAATTTATGGATTATGGATGTGTGTGGTACAATGTTTTATTACAAGTAACTTCAATCTAGAATAGAAAGAAAGAACAGAAAGCTAATCGTGATTCTCTTTGGTTCGCTTATTACAAGTCTTTGGTTTGCTTATCTTCTTATCTTGTTTATTTAGGAATTTTTGTTTTCCTATAATGCATTAGTCAGTTTTACATACTTGCTTGTTGAGATACGTCAAAACGTGAAAGACTTGTTGTTGGCTTTCAAGCTTGGGAATGGAAAGAGTTCAGAAAAAGACGTTGCAGATTTATCCAAGTATTATTCCACTCCTCATGTTGGGATATTTTTTAGTATCTTCTGTTAGGTACCTAAATAAAGAGGTTGTTAGAAAGTTTATTCTACCATTCAAGTATTATTCTACCCCTACACTATAAGTTTTTAGAAATTTTATCTCTACTTGGTTGTATTTGTTCACATCATTTCTTCTTCTCTTCATTTGAAAGTTTGTGTCTTTTCAACTTTTGTTCCTTTTCATAACATCAATAAGAACATAATTCTATATCAAAGTTGTTAGACTTAGAAGTTAAAGTTCTTAGTTTTAATGTTATTCTCATTGACCTTGACTTCTTTGTTTACTCATGTTGTAGAATTCTTTTGTCTTTGCTCTAAGCACATGGTAATTTCAATTGTTGGGCTGTTGTAATTTACTTTAGTTTATTTTTATGATTTTAGAGTTAGTTGAGTTTAGTTTTAATTTGGTAAGATGTTCTTTAATCATGCGTTATAAGACAAGCTTGTTGATTAAAAGTCTTTATGCAAAGTTTTAGATTTGTACTGTTTATAAGGATTTATGAAAAGGGTAGTTAGGTGGCAACGTAGCATATTCCATGCTTTTGGATAAATTTGGAGGGCCTTACATATTATCTACTTTTGCTTTGTTTGATATGCATCTTCCCTAGAAATCTTACTAAAGACCCCTCCTGCTAATCAGTACTTTTTTGTCTGATGGATGGATTTTAGGTTGGTGGTGAAATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAATTTGCGTGAGTCGTCCAACGCTGTAAAGCTGGTAAGATGTTTTCTTATTTTCTACGTCCTTGTCAACTTTAGATTACAAAAATGACATGACCACAAGTTCAAATTCTTTGTAGGTACACTATGAGCAAATTTAAGATAGAAGTACCAAATTATATAATTGAAATTTTAATTATGCAGGTGTGAGATTTTCTTCTTAATTTTGGTGTCTATTATGCAACTAGAGCTCTCTTGGACTTACATTTGAGTGGAGGTTAGTCACCATTAATAATTTTCTATACATTTGAGTTGGATGGAATATATTTCCCCACTTTAAATTGATTATTCTAGGAAGTCTGAATAGAAGAATTGTGAATGCCGAACAGAATCACATTTATTTCAAGAATAGTTTAACTTTTTGTTTATTCAACCTTTCATAGTATCGTTTTATATGGGTATGTTTTGAGATGATCGGACTACAAACTTTTGAATATTGTTTTTCTTTTTTGCTAAAACTTGCTAAGTTTGATTGTAGGTTGTTGCTTCAAGAATTATTCGGTGAAACTTATTGGAAAGCTTCGTGAAGTATTTAACACTCGAAAAGACGAAATTATTGAGGGTCGAAACATAATTTTAATGTTTAATAGTCCTATAGTTAGTTATTTTATTTATCTTTATAAATTGAGCGTAGTTTGTGGAGAGACATTAATAGCCATACTATTCTTATTCTCTTAC

mRNA sequence

CTCTGCTTTCGTCAAATTGTCTGTTCGTCCATTCGTCCATTCGTCCATTCGTCCATCGCTTCATTTCCTCCACAGCCACCGCGCACGGCTGAGGACAGTCACGTCAAACCATCCATTCATTTTCACCACAGTCACCGTCCATTCATCCATTCGTTTCCTCCACGAAGCTCTTGTATCCCTGGGTTTTGTGAAATTTCAAATTCTTGTGCTTGCTTATACTGGAATGGGATGGGTATAAGGAACTACGGAAATGTTGCTACTCTCCTTCACTAACATATGTGTATGCTTGATGATGTGACGTCCTTTCTCTTGTTAATGCACTTTGTGCAATCTACTTACGTCTTTTTCTTCCTCTTGTTAAATATTTTGATGCTTTAATATTTATCTAAATTGAAATGCTTTAATAATTCCTCTGTGATTTAGTTGTTATTTGCTTTCATTCTTGTTTCCATATGCACTCCCATGTAGAGTTTGTTCTTTTGAGCGCTAGTTTCTTCTGTTTCATCAATTAAAAGTTTTGTTTCTTGTTCAAGCTATATCTTTATCTTCTTTATGAATCTAATTTATGGATTATGGATGTGTGTGGTACAATGTTTTATTACAAGTAACTTCAATCTAGAATAGAAAGAAAGAACAGAAAGCTAATCGTGATTCTCTTTGGTTCGCTTATTACAAGTCTTTGGTTTGCTTATCTTCTTATCTTGTTTATTTAGGAATTTTTGTTTTCCTATAATGCATTAGTCAGTTTTACATACTTGCTTGTTGAGATACGTCAAAACGTGAAAGACTTGTTGTTGGCTTTCAAGCTTGGGAATGGAAAGAGTTCAGAAAAAGACGTTGCAGATTTATCCAAGTTGGTGGTGAAATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAATTTGCGTGAGTCGTCCAACGCTGTAAAGCTGGTGTGAGATTTTCTTCTTAATTTTGGTGTCTATTATGCAACTAGAGCTCTCTTGGACTTACATTTGAGTGGAGGTTGTTGCTTCAAGAATTATTCGGTGAAACTTATTGGAAAGCTTCGTGAAGTATTTAACACTCGAAAAGACGAAATTATTGAGGGTCGAAACATAATTTTAATGTTTAATAGTCCTATAGTTAGTTATTTTATTTATCTTTATAAATTGAGCGTAGTTTGTGGAGAGACATTAATAGCCATACTATTCTTATTCTCTTAC

Coding sequence (CDS)

ATGAAATTTGTGCTTTCAAGCCATTTAGATTTTCCTACAGAGAGTCGTCAGATGGATAGGAAGTATAGCCGAGAATCGTCAGATGAGGATGGAGTGAAAGGTAACAGGAGAACAAGCAGAGATAATGACAGACAAGATAGAGACAAAAGACATCAGGGCAAAAATTTGCACAGAGAAGTAGAGAGGGGAAAATCTAAATGGAGATTCATGATTAGAATTAAATAA

Protein sequence

MKFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSKWRFMIRIK

Homology

[Close]

BLAST of MELO3C004695 vs. NCBI nr
Match: KAA0025364.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2   KFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ 53
           KFVLSSHLDFPTESRQ+D KYSRESSDED VKGNRRTS+DN RQDRDKRHQ
Sbjct: 120 KFVLSSHLDFPTESRQIDGKYSRESSDEDEVKGNRRTSKDNVRQDRDKRHQ 170

[Close]

BLAST of MELO3C004695 vs. NCBI nr
Match: XP_004142129.1 (pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus] >KGN54161.1 hypothetical protein Csa_017978 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED VKGNRRTSRDNDRQDRDKRHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEVKGNRRTSRDNDRQDRDKRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. NCBI nr
Match: XP_008449736.1 (PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. NCBI nr
Match: KAA0041393.1 (pre-mRNA-splicing factor CWC22-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. NCBI nr
Match: TYJ96154.1 (pre-mRNA-splicing factor CWC22-like protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. ExPASy TrEMBL
Match: A0A5A7SI96 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00480 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.0e-13
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 2   KFVLSSHLDFPTESRQMDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQ 53
           KFVLSSHLDFPTESRQ+D KYSRESSDED VKGNRRTS+DN RQDRDKRHQ
Sbjct: 120 KFVLSSHLDFPTESRQIDGKYSRESSDEDEVKGNRRTSKDNVRQDRDKRHQ 170

[Close]

BLAST of MELO3C004695 vs. ExPASy TrEMBL
Match: A0A0A0L1Y4 (MI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G290770 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 45/49 (91.84%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED VKGNRRTSRDNDRQDRDKRHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEVKGNRRTSRDNDRQDRDKRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. ExPASy TrEMBL
Match: A0A5D3BB30 (Pre-mRNA-splicing factor CWC22-like protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001240 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. ExPASy TrEMBL
Match: A0A5A7TE12 (Pre-mRNA-splicing factor CWC22-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00390 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

[Close]

BLAST of MELO3C004695 vs. ExPASy TrEMBL
Match: A0A1S3BNN3 (pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491527 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.6e-11
Identity = 42/49 (85.71%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 18 MDRKYSRESSDEDGVKGNRRTSRDNDRQDRDKRHQGKNLHREVERGKSK 67
          MDRKYSRESSDED  KGNRR SRDNDRQDRD+RHQ KNLHREVERG  K
Sbjct: 1  MDRKYSRESSDEDEAKGNRRASRDNDRQDRDRRHQDKNLHREVERGDKK 49

The following BLAST results are available for this feature:

BLAST of MELO3C004695 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C004695 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025364.1	2.1e-13	90.20	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_004142129.1	1.4e-12	91.84	pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus] >KGN54161.1 hypothetica...	[more]
XP_008449736.1	3.4e-11	85.71	PREDICTED: pre-mRNA-splicing factor CWC22 homolog isoform X2 [Cucumis melo]	[more]
KAA0041393.1	3.4e-11	85.71	pre-mRNA-splicing factor CWC22-like protein isoform X1 [Cucumis melo var. makuwa...	[more]
TYJ96154.1	3.4e-11	85.71	pre-mRNA-splicing factor CWC22-like protein isoform X2 [Cucumis melo var. makuwa...	[more]

BLAST of MELO3C004695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SI96	1.0e-13	90.20	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0L1Y4	6.6e-13	91.84	MI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G290770 PE=4 SV=...	[more]
A0A5D3BB30	1.6e-11	85.71	Pre-mRNA-splicing factor CWC22-like protein isoform X2 OS=Cucumis melo var. maku...	[more]
A0A5A7TE12	1.6e-11	85.71	Pre-mRNA-splicing factor CWC22-like protein isoform X1 OS=Cucumis melo var. maku...	[more]
A0A1S3BNN3	1.6e-11	85.71	pre-mRNA-splicing factor CWC22 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of MELO3C004695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C004695.1	MELO3C004695.1	mRNA