MELO3C004532.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C004532.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 28662997 .. 28663221 (+)
RNA-Seq ExpressionMELO3C004532.jh1
SyntenyMELO3C004532.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAATACTCGGAAGACGACGACAACGTTGATCATAGTGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

mRNA sequence

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAATACTCGGAAGACGACGACAACGTTGATCATAGTGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Coding sequence (CDS)

ATGTCTATCATTTCGAAGATCGTTGTTTGTTGGAACAAAAAATACTCGGAAGACGACGACAACGTTGATCATAGTGATTTTAGCATTATTGATGCTAATTTGATGAACAATGAAGGAGATCACGATCATCACAATAGTATGGATGGATATAACCATCTAATGCCATGTTTTGAAGATGATGGTGATGATGAAGACCCAATTTACGATTATGCTCCGGCTGCATGA

Protein sequence

MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDDGDDEDPIYDYAPAA
Homology
[Close]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match: MBA0622207.1 (hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [Gossypium klotzschianum])

HSP 1 Score: 48.9 bits (115), Expect = 2.94e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASRE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match: MBA0575172.1 (hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gossypium aridum] >TYI79433.1 hypothetical protein E1A91_D05G021900v1 [Gossypium mustelinum])

HSP 1 Score: 48.1 bits (113), Expect = 3.17e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

[Close]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match: MBA0744760.1 (hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 48.1 bits (113), Expect = 5.88e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match: MBA0564450.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 47.4 bits (111), Expect = 6.36e-05
Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+ + DD  D +DF    A  M  +GD D     DG     P    +
Sbjct: 1  MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDNGSYDYAPAA 68

[Close]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match: MBA0744761.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 47.8 bits (112), Expect = 8.31e-05
Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+ + DD  D +DF    A  M  +GD D     DG     P    +
Sbjct: 29 MSALSKVVASWCKKHVDGDD--DDNDFDYAPAACMEGDGDDD-----DGDYDYAPAASLE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match: A0A7J8S7Y2 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_007768 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.42e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASRE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match: A0A7J8V4S3 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009964 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.42e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 29 MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASRE 88

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 89 GDDDDDGSYDYAPAA 96

[Close]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match: A0A7J8XT84 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_007958 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.53e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

[Close]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match: A0A7J8NE91 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_024021 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.53e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

[Close]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match: A0A5D2USF6 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G021900v1 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.53e-05
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 0 

Query: 1  MSIISKIVVCWNKKYSEDDDNVDHSDFSIIDANLMNNEGDHDHHNSMDGYNHLMPCFEDD 60
          MS +SK+V  W KK+++ DD  D +DF    A  M   GD D     DG   + P    +
Sbjct: 1  MSPLSKVVASWCKKHADGDD--DDNDFDYAPAACMEGNGDDD-----DGDYDVAPAASLE 60

Query: 61 GDDEDP-IYDYAPAA 74
          GDD+D   YDYAPAA
Sbjct: 61 GDDDDDGSYDYAPAA 68

The following BLAST results are available for this feature:
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
MBA0622207.12.94e-0542.67hypothetical protein [Gossypium davidsonii] >MBA0657693.1 hypothetical protein [... [more]
MBA0575172.13.17e-0542.67hypothetical protein [Gossypium lobatum] >MBA0690270.1 hypothetical protein [Gos... [more]
MBA0744760.15.88e-0542.67hypothetical protein [Gossypium gossypioides] >MBA0865730.1 hypothetical protein... [more]
MBA0564450.16.36e-0542.67hypothetical protein [Gossypium lobatum][more]
MBA0744761.18.31e-0542.67hypothetical protein [Gossypium gossypioides][more]
BLAST of MELO3C004532.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J8S7Y21.42e-0542.67Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_007768 PE=4 SV... [more]
A0A7J8V4S31.42e-0542.67Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_009964 PE=4... [more]
A0A7J8XT841.53e-0542.67Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_007958 PE=4 SV=1[more]
A0A7J8NE911.53e-0542.67Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_024021 PE=4 SV=1[more]
A0A5D2USF61.53e-0542.67Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G021900v1 P... [more]
BLAST of MELO3C004532.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C004532.jh1.t1MELO3C004532.jh1.t1mRNA